Wall clock time and date at job start Mon Mar 30 2020 01:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35998 * 126.36042 * 2 1 4 4 N 1.30117 * 110.10839 * 180.02562 * 3 2 1 5 5 C 1.35797 * 109.66509 * 0.02562 * 4 3 2 6 6 C 1.39759 * 133.50560 * 180.32693 * 5 4 3 7 7 C 1.38036 * 119.71943 * 180.16291 * 6 5 4 8 8 O 1.35980 * 119.79450 * 179.77359 * 7 6 5 9 9 C 1.42893 * 116.99749 * 179.72446 * 8 7 6 10 10 C 1.53001 * 109.47139 * 179.97438 * 9 8 7 11 11 C 1.50702 * 115.55044 * 39.60309 * 10 9 8 12 12 H 1.08002 * 120.00077 * 260.49507 * 11 10 9 13 13 C 1.37874 * 120.00063 * 80.49490 * 11 10 9 14 14 N 1.31523 * 120.00068 * 4.98023 * 13 11 10 15 15 Si 1.86796 * 120.00293 * 184.97915 * 13 11 10 16 16 H 1.48499 * 109.47221 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47273 * 120.00153 * 15 13 11 18 18 H 1.48503 * 109.47398 * 240.00150 * 15 13 11 19 19 C 1.53002 * 117.50356 * 185.27677 * 10 9 8 20 20 C 1.53002 * 60.03274 * 107.49936 * 19 10 9 21 21 C 1.39225 * 120.40958 * 359.49024 * 7 6 5 22 22 C 1.37789 * 120.40451 * 0.24023 * 21 7 6 23 23 C 1.38252 * 126.35409 * 180.02562 * 2 1 3 24 24 H 1.08995 * 109.47362 * 269.95451 * 1 2 3 25 25 H 1.09009 * 109.47032 * 29.96082 * 1 2 3 26 26 H 1.09004 * 109.47740 * 149.95554 * 1 2 3 27 27 H 1.08001 * 124.94467 * 0.05468 * 3 2 1 28 28 H 1.08000 * 120.14226 * 359.91114 * 6 5 4 29 29 H 1.09000 * 109.47588 * 59.99762 * 9 8 7 30 30 H 1.09000 * 109.46925 * 299.99476 * 9 8 7 31 31 H 0.96993 * 119.99778 * 180.02562 * 14 13 11 32 32 H 1.08994 * 117.50149 * 215.00224 * 19 10 9 33 33 H 1.08999 * 117.49202 * 359.97438 * 19 10 9 34 34 H 1.09002 * 117.49485 * 107.49918 * 20 19 10 35 35 H 1.08995 * 117.49750 * 252.52522 * 20 19 10 36 36 H 1.08001 * 119.79796 * 180.25465 * 21 7 6 37 37 H 1.07993 * 120.04986 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0952 0.0000 4 7 3.5204 0.7311 -0.0005 5 6 3.6013 -0.6245 -0.0015 6 6 4.6704 -1.5246 0.0034 7 6 4.4219 -2.8824 -0.0028 8 8 5.4610 -3.7595 -0.0027 9 6 5.1355 -5.1508 -0.0031 10 6 6.4238 -5.9761 -0.0036 11 6 7.5363 -5.4448 0.8632 12 1 8.3417 -4.8774 0.4207 13 6 7.5260 -5.6832 2.2211 14 7 6.5999 -6.4555 2.7463 15 14 8.8273 -4.9092 3.3152 16 1 9.7470 -4.0892 2.4865 17 1 8.1714 -4.0446 4.3289 18 1 9.5976 -5.9781 4.0003 19 6 6.2899 -7.4951 -0.1289 20 6 6.8159 -6.6743 -1.3082 21 6 3.1139 -3.3594 -0.0032 22 6 2.0516 -2.4819 -0.0024 23 6 2.2845 -1.1134 -0.0005 24 1 -0.3634 -0.0008 1.0276 25 1 -0.3633 0.8904 -0.5133 26 1 -0.3635 -0.8896 -0.5145 27 1 1.9251 2.1182 0.0008 28 1 5.6868 -1.1594 0.0079 29 1 4.5526 -5.3874 -0.8933 30 1 4.5522 -5.3878 0.8867 31 1 6.5925 -6.6228 3.7016 32 1 7.0063 -8.1101 0.4156 33 1 5.2839 -7.9065 -0.2106 34 1 7.8785 -6.7495 -1.5394 35 1 6.1558 -6.5455 -2.1659 36 1 2.9309 -4.4238 -0.0038 37 1 1.0394 -2.8582 -0.0023 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000902781301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:05 Heat of formation + Delta-G solvation = 67.996213 kcal Electronic energy + Delta-G solvation = -20161.907521 eV Core-core repulsion = 17099.579335 eV Total energy + Delta-G solvation = -3062.328185 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.90927 -38.90336 -36.53698 -35.12923 -34.13284 -31.88917 -30.10835 -28.71906 -27.13870 -26.21423 -25.18932 -23.07463 -21.51970 -21.10423 -20.55117 -19.18354 -17.58655 -17.07078 -16.35832 -15.94299 -15.77194 -14.90043 -14.80373 -14.38381 -14.01560 -13.81257 -13.52271 -13.24394 -12.99512 -12.73340 -12.48103 -12.26331 -11.60890 -11.53541 -11.02500 -10.89857 -10.70088 -10.46672 -10.40230 -10.19041 -9.77363 -9.75993 -9.48876 -8.93045 -8.39270 -8.10574 -8.02991 -7.31557 -5.99785 -4.02449 1.13275 1.88890 2.65685 2.94170 3.35084 3.43535 3.48989 3.89922 4.16621 4.47721 4.51701 4.56707 4.68847 4.90183 5.07568 5.17226 5.27413 5.32070 5.47562 5.56736 5.65780 5.80797 5.96085 6.15241 6.24912 6.29992 6.48834 6.52157 6.63200 6.71444 6.78183 6.81462 6.97582 7.03034 7.22267 7.30655 7.47624 7.94414 8.00537 8.24957 8.49764 8.97359 9.62605 11.10120 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.004719 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.380091 B = 5932.565250 C = 6546.446670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.501 5.501 3 C 0.255 3.745 4 N -0.501 5.501 5 C 0.085 3.915 6 C -0.122 4.122 7 C 0.142 3.858 8 O -0.280 6.280 9 C 0.106 3.894 10 C 0.039 3.961 11 C -0.477 4.477 12 H 0.062 0.938 13 C 0.070 3.930 14 N -0.886 5.886 15 Si 0.890 3.110 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.286 1.286 19 C -0.148 4.148 20 C -0.209 4.209 21 C -0.177 4.177 22 C -0.078 4.078 23 C 0.002 3.998 24 H 0.070 0.930 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.209 0.791 28 H 0.136 0.864 29 H 0.031 0.969 30 H 0.061 0.939 31 H 0.258 0.742 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.136 0.864 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.275 9.570 -5.457 18.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.194 5.194 3 C -0.031 4.031 4 N -0.221 5.221 5 C -0.033 4.033 6 C -0.143 4.143 7 C 0.092 3.908 8 O -0.191 6.191 9 C 0.031 3.969 10 C 0.038 3.962 11 C -0.515 4.515 12 H 0.080 0.920 13 C -0.132 4.132 14 N -0.523 5.523 15 Si 0.718 3.282 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.212 1.212 19 C -0.185 4.185 20 C -0.246 4.246 21 C -0.197 4.197 22 C -0.098 4.098 23 C -0.104 4.104 24 H 0.089 0.911 25 H 0.103 0.897 26 H 0.099 0.901 27 H 0.226 0.774 28 H 0.154 0.846 29 H 0.049 0.951 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.154 0.846 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.542 10.009 -5.277 17.647 hybrid contribution -0.529 -0.237 0.779 0.971 sum -14.071 9.772 -4.499 17.712 Atomic orbital electron populations 1.21878 0.76697 1.04221 1.03099 1.45160 1.06782 1.05565 1.61906 1.25236 0.85344 0.93177 0.99304 1.70411 1.18081 1.11137 1.22460 1.18555 0.91401 0.89753 1.03546 1.19217 0.98302 0.88704 1.08040 1.18773 0.87193 0.90144 0.94654 1.86319 1.29173 1.16994 1.86606 1.22453 0.98626 0.77544 0.98298 1.18741 0.93486 0.89840 0.94102 1.20336 1.06375 1.33577 0.91195 0.91974 1.24936 0.95805 0.94497 0.97959 1.69998 1.34127 1.36301 1.11891 0.86555 0.81731 0.79214 0.80685 1.19539 1.20952 1.21209 1.22548 0.99546 0.96087 1.00337 1.23095 1.00081 1.09365 0.92095 1.21186 0.91641 1.00234 1.06645 1.19607 0.98863 0.88580 1.02791 1.18743 0.91117 0.89214 1.11300 0.91097 0.89705 0.90091 0.77410 0.84614 0.95063 0.92054 0.93196 0.89414 0.91880 0.90136 0.91581 0.84607 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 11.18 59.85 0.67 1.21 16 2 N -0.50 -5.86 3.21 -123.15 -0.40 -6.25 16 3 C 0.25 3.02 12.50 -89.81 -1.12 1.90 16 4 N -0.50 -8.28 11.27 -12.06 -0.14 -8.42 16 5 C 0.08 1.53 7.22 -84.70 -0.61 0.92 16 6 C -0.12 -2.38 10.03 -39.09 -0.39 -2.77 16 7 C 0.14 2.85 6.67 -39.29 -0.26 2.59 16 8 O -0.28 -6.48 9.51 -19.68 -0.19 -6.67 16 9 C 0.11 2.38 4.80 37.16 0.18 2.56 16 10 C 0.04 0.96 1.79 -155.62 -0.28 0.68 16 11 C -0.48 -13.22 8.21 -34.44 -0.28 -13.50 16 12 H 0.06 1.76 7.82 -52.49 -0.41 1.35 16 13 C 0.07 1.95 5.44 -17.82 -0.10 1.86 16 14 N -0.89 -25.11 12.87 55.43 0.71 -24.39 16 15 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 16 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 C -0.15 -3.38 9.43 -26.73 -0.25 -3.63 16 20 C -0.21 -4.53 9.89 -26.69 -0.26 -4.79 16 21 C -0.18 -3.03 9.02 -39.38 -0.36 -3.39 16 22 C -0.08 -1.15 10.04 -39.53 -0.40 -1.54 16 23 C 0.00 0.03 6.87 -83.92 -0.58 -0.54 16 24 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.21 1.36 8.06 -52.49 -0.42 0.93 16 28 H 0.14 2.65 8.06 -52.49 -0.42 2.23 16 29 H 0.03 0.62 7.45 -51.93 -0.39 0.23 16 30 H 0.06 1.44 7.65 -51.93 -0.40 1.04 16 31 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 32 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.07 1.28 8.08 -51.93 -0.42 0.86 16 36 H 0.14 2.16 6.26 -52.49 -0.33 1.83 16 37 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -32.80 319.40 -9.14 -41.94 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -4.88 Total: 0.64 kcal Atomic # 6 Polarization: -14.42 SS G_CDS: -4.04 Total: -18.46 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.18 Total: -39.07 kcal Atomic # 8 Polarization: -6.48 SS G_CDS: -0.19 Total: -6.67 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.80 -9.14 -41.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902781301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.934 kcal (2) G-P(sol) polarization free energy of solvation -32.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds