Wall clock time and date at job start Mon Mar 30 2020 01:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.35998 * 126.36042 * 2 1 4 4 N 1.30117 * 110.10839 * 180.02562 * 3 2 1 5 5 C 1.35797 * 109.66509 * 0.02562 * 4 3 2 6 6 C 1.39759 * 133.50560 * 180.32693 * 5 4 3 7 7 C 1.38036 * 119.71943 * 180.16291 * 6 5 4 8 8 O 1.35980 * 119.79450 * 179.77359 * 7 6 5 9 9 C 1.42893 * 116.99749 * 179.72446 * 8 7 6 10 10 C 1.53001 * 109.47139 * 179.97438 * 9 8 7 11 11 C 1.50702 * 115.55044 * 39.60309 * 10 9 8 12 12 H 1.08002 * 120.00077 * 260.49507 * 11 10 9 13 13 C 1.37874 * 120.00063 * 80.49490 * 11 10 9 14 14 N 1.31523 * 120.00068 * 4.98023 * 13 11 10 15 15 Si 1.86796 * 120.00293 * 184.97915 * 13 11 10 16 16 H 1.48499 * 109.47221 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.47273 * 120.00153 * 15 13 11 18 18 H 1.48503 * 109.47398 * 240.00150 * 15 13 11 19 19 C 1.53002 * 117.50356 * 185.27677 * 10 9 8 20 20 C 1.53002 * 60.03274 * 107.49936 * 19 10 9 21 21 C 1.39225 * 120.40958 * 359.49024 * 7 6 5 22 22 C 1.37789 * 120.40451 * 0.24023 * 21 7 6 23 23 C 1.38252 * 126.35409 * 180.02562 * 2 1 3 24 24 H 1.08995 * 109.47362 * 269.95451 * 1 2 3 25 25 H 1.09009 * 109.47032 * 29.96082 * 1 2 3 26 26 H 1.09004 * 109.47740 * 149.95554 * 1 2 3 27 27 H 1.08001 * 124.94467 * 0.05468 * 3 2 1 28 28 H 1.08000 * 120.14226 * 359.91114 * 6 5 4 29 29 H 1.09000 * 109.47588 * 59.99762 * 9 8 7 30 30 H 1.09000 * 109.46925 * 299.99476 * 9 8 7 31 31 H 0.96993 * 119.99778 * 180.02562 * 14 13 11 32 32 H 1.08994 * 117.50149 * 215.00224 * 19 10 9 33 33 H 1.08999 * 117.49202 * 359.97438 * 19 10 9 34 34 H 1.09002 * 117.49485 * 107.49918 * 20 19 10 35 35 H 1.08995 * 117.49750 * 252.52522 * 20 19 10 36 36 H 1.08001 * 119.79796 * 180.25465 * 21 7 6 37 37 H 1.07993 * 120.04986 * 180.02562 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2713 1.0952 0.0000 4 7 3.5204 0.7311 -0.0005 5 6 3.6013 -0.6245 -0.0015 6 6 4.6704 -1.5246 0.0034 7 6 4.4219 -2.8824 -0.0028 8 8 5.4610 -3.7595 -0.0027 9 6 5.1355 -5.1508 -0.0031 10 6 6.4238 -5.9761 -0.0036 11 6 7.5363 -5.4448 0.8632 12 1 8.3417 -4.8774 0.4207 13 6 7.5260 -5.6832 2.2211 14 7 6.5999 -6.4555 2.7463 15 14 8.8273 -4.9092 3.3152 16 1 9.7470 -4.0892 2.4865 17 1 8.1714 -4.0446 4.3289 18 1 9.5976 -5.9781 4.0003 19 6 6.2899 -7.4951 -0.1289 20 6 6.8159 -6.6743 -1.3082 21 6 3.1139 -3.3594 -0.0032 22 6 2.0516 -2.4819 -0.0024 23 6 2.2845 -1.1134 -0.0005 24 1 -0.3634 -0.0008 1.0276 25 1 -0.3633 0.8904 -0.5133 26 1 -0.3635 -0.8896 -0.5145 27 1 1.9251 2.1182 0.0008 28 1 5.6868 -1.1594 0.0079 29 1 4.5526 -5.3874 -0.8933 30 1 4.5522 -5.3878 0.8867 31 1 6.5925 -6.6228 3.7016 32 1 7.0063 -8.1101 0.4156 33 1 5.2839 -7.9065 -0.2106 34 1 7.8785 -6.7495 -1.5394 35 1 6.1558 -6.5455 -2.1659 36 1 2.9309 -4.4238 -0.0038 37 1 1.0394 -2.8582 -0.0023 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000902781301.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:05 Heat of formation + Delta-G solvation = 49.461846 kcal Electronic energy + Delta-G solvation = -20162.711231 eV Core-core repulsion = 17099.579335 eV Total energy + Delta-G solvation = -3063.131896 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.00962 -40.43055 -38.21951 -36.57817 -35.11311 -33.98875 -31.37380 -29.93014 -28.39966 -27.55143 -27.10293 -24.26791 -22.96532 -22.74827 -21.63222 -21.05350 -19.01697 -18.15194 -18.02563 -17.35170 -16.85510 -16.65486 -16.24829 -16.19718 -15.43674 -14.99620 -14.91058 -14.49393 -14.03338 -13.91105 -13.80461 -13.49744 -13.26500 -13.13602 -12.87287 -12.75492 -12.42802 -12.18780 -12.02964 -11.67453 -11.34401 -11.05502 -10.92911 -10.84763 -10.42199 -9.95950 -9.25377 -8.66430 -8.11610 -6.18167 -0.05897 0.57323 1.36505 1.40640 1.50822 1.78076 1.87819 2.39403 2.47199 2.84136 3.19360 3.44564 3.53418 3.68716 3.96024 3.98578 4.18100 4.28688 4.34651 4.42593 4.50218 4.50611 4.52887 4.67766 4.73498 4.78078 4.89579 5.00887 5.04263 5.21717 5.33197 5.35571 5.47984 5.52963 5.64194 5.72632 5.78368 6.31002 6.37857 6.74784 6.86476 6.93072 7.48184 8.97562 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022789 B = 0.004719 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.380091 B = 5932.565250 C = 6546.446670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.493 5.493 3 C 0.279 3.721 4 N -0.553 5.553 5 C 0.062 3.938 6 C -0.151 4.151 7 C 0.116 3.884 8 O -0.313 6.313 9 C 0.119 3.881 10 C 0.000 4.000 11 C -0.492 4.492 12 H 0.043 0.957 13 C 0.029 3.971 14 N -0.907 5.907 15 Si 0.940 3.060 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.143 4.143 20 C -0.187 4.187 21 C -0.191 4.191 22 C -0.056 4.056 23 C -0.003 4.003 24 H 0.085 0.915 25 H 0.120 0.880 26 H 0.090 0.910 27 H 0.264 0.736 28 H 0.113 0.887 29 H 0.060 0.940 30 H 0.043 0.957 31 H 0.259 0.741 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.146 0.854 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.520 10.832 -6.068 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.184 5.184 3 C -0.006 4.006 4 N -0.275 5.275 5 C -0.056 4.056 6 C -0.172 4.172 7 C 0.068 3.932 8 O -0.226 6.226 9 C 0.044 3.956 10 C -0.001 4.001 11 C -0.530 4.530 12 H 0.061 0.939 13 C -0.171 4.171 14 N -0.545 5.545 15 Si 0.767 3.233 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.201 1.201 19 C -0.180 4.180 20 C -0.224 4.224 21 C -0.211 4.211 22 C -0.077 4.077 23 C -0.111 4.111 24 H 0.103 0.897 25 H 0.138 0.862 26 H 0.109 0.891 27 H 0.280 0.720 28 H 0.131 0.869 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.163 0.837 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -16.829 11.279 -5.895 21.100 hybrid contribution 0.350 -0.434 0.930 1.084 sum -16.479 10.846 -4.965 20.343 Atomic orbital electron populations 1.22345 0.73000 1.06567 1.04780 1.45530 1.08773 1.04017 1.60066 1.26313 0.84039 0.95144 0.95147 1.70380 1.21167 1.10469 1.25484 1.18708 0.92216 0.90709 1.03969 1.19204 0.98210 0.89378 1.10436 1.18987 0.87922 0.89736 0.96575 1.86236 1.31300 1.17442 1.87662 1.22221 0.97348 0.77359 0.98670 1.18924 0.94030 0.91131 0.95994 1.20535 1.06961 1.33330 0.92157 0.93911 1.25510 0.97544 0.95029 0.98982 1.70064 1.35253 1.37195 1.11996 0.85778 0.79862 0.78610 0.79088 1.19750 1.21140 1.20063 1.22454 1.00180 0.94715 1.00675 1.23114 1.00547 1.06757 0.91994 1.21274 0.90869 1.01185 1.07781 1.19967 1.00031 0.88000 0.99665 1.18909 0.90943 0.90507 1.10782 0.89664 0.86164 0.89143 0.72010 0.86855 0.92190 0.93906 0.93197 0.91691 0.89722 0.90479 0.88547 0.83666 0.82069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.54 11.18 127.77 1.43 1.97 16 2 N -0.49 -9.60 3.21 -543.54 -1.74 -11.34 16 3 C 0.28 5.64 12.50 180.07 2.25 7.89 16 4 N -0.55 -17.92 11.27 -192.07 -2.17 -20.09 16 5 C 0.06 2.26 7.22 39.44 0.28 2.54 16 6 C -0.15 -6.31 10.03 22.59 0.23 -6.09 16 7 C 0.12 4.87 6.67 22.46 0.15 5.02 16 8 O -0.31 -15.27 9.51 -93.32 -0.89 -16.16 16 9 C 0.12 5.44 4.80 71.98 0.35 5.79 16 10 C 0.00 -0.02 1.79 -52.90 -0.09 -0.11 16 11 C -0.49 -28.23 8.21 25.60 0.21 -28.02 16 12 H 0.04 2.53 7.82 -2.91 -0.02 2.51 16 13 C 0.03 1.67 5.44 84.65 0.46 2.13 16 14 N -0.91 -52.55 12.87 21.45 0.28 -52.28 16 15 Si 0.94 46.05 29.54 68.60 2.03 48.08 16 16 H -0.27 -13.30 7.11 99.48 0.71 -12.59 16 17 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 C -0.14 -6.51 9.43 30.60 0.29 -6.23 16 20 C -0.19 -7.98 9.89 30.62 0.30 -7.68 16 21 C -0.19 -6.47 9.02 22.40 0.20 -6.27 16 22 C -0.06 -1.53 10.04 22.30 0.22 -1.31 16 23 C 0.00 -0.10 6.87 38.81 0.27 0.17 16 24 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.12 0.11 8.14 -2.38 -0.02 0.09 16 26 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.26 1.97 8.06 -2.91 -0.02 1.95 16 28 H 0.11 4.96 8.06 -2.91 -0.02 4.94 16 29 H 0.06 2.32 7.45 -2.39 -0.02 2.31 16 30 H 0.04 2.06 7.65 -2.39 -0.02 2.04 16 31 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 32 H 0.06 3.23 8.14 -2.39 -0.02 3.21 16 33 H 0.08 3.44 8.14 -2.39 -0.02 3.43 16 34 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 35 H 0.10 3.51 8.08 -2.39 -0.02 3.49 16 36 H 0.15 4.52 6.26 -2.91 -0.02 4.50 16 37 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 Total: -1.00 -75.87 319.40 5.12 -70.76 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: 1.07 Total: 11.22 kcal Atomic # 6 Polarization: -36.74 SS G_CDS: 6.55 Total: -30.20 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -3.63 Total: -83.70 kcal Atomic # 8 Polarization: -15.27 SS G_CDS: -0.89 Total: -16.16 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -75.87 5.12 -70.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000902781301.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.217 kcal (2) G-P(sol) polarization free energy of solvation -75.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds