Wall clock time and date at job start Mon Mar 30 2020 01:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47215 * 2 1 4 4 C 1.52997 * 109.46764 * 119.99423 * 2 1 3 5 5 C 1.47203 * 109.47674 * 295.00138 * 4 2 1 6 6 N 3.43560 * 86.99470 * 79.48760 * 2 1 3 7 7 C 1.50697 * 109.47322 * 239.99467 * 2 1 3 8 8 O 1.21284 * 119.99763 * 240.00039 * 7 2 1 9 9 N 1.34772 * 119.99733 * 60.00141 * 7 2 1 10 10 C 1.39929 * 119.99838 * 175.38562 * 9 7 2 11 11 C 1.38869 * 120.07002 * 214.80909 * 10 9 7 12 12 C 1.38113 * 119.92677 * 179.74925 * 11 10 9 13 13 C 1.38283 * 120.07190 * 0.53003 * 12 11 10 14 14 C 1.50701 * 119.93071 * 179.72786 * 13 12 11 15 15 C 1.50705 * 109.46835 * 270.01655 * 14 13 12 16 16 H 1.07999 * 120.00005 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99782 * 179.97438 * 15 14 13 18 18 N 1.31522 * 119.99735 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00099 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.46845 * 89.99892 * 19 17 15 21 21 H 1.48507 * 109.46955 * 209.99704 * 19 17 15 22 22 H 1.48491 * 109.47327 * 329.99958 * 19 17 15 23 23 C 1.38278 * 120.13941 * 359.74241 * 13 12 11 24 24 C 1.38114 * 120.07295 * 359.97438 * 23 13 12 25 25 H 1.08993 * 109.47518 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47247 * 60.00434 * 1 2 3 27 27 H 1.09000 * 109.47535 * 300.00629 * 1 2 3 28 28 H 1.09005 * 109.47288 * 55.00075 * 4 2 1 29 29 H 1.09004 * 109.47451 * 175.00079 * 4 2 1 30 30 H 0.97001 * 120.00783 * 355.38669 * 9 7 2 31 31 H 1.07996 * 120.03578 * 0.02562 * 11 10 9 32 32 H 1.08008 * 119.96663 * 180.27624 * 12 11 10 33 33 H 1.08995 * 109.47238 * 30.01746 * 14 13 12 34 34 H 1.08996 * 109.47120 * 150.02106 * 14 13 12 35 35 H 0.97004 * 119.99418 * 180.02562 * 18 17 15 36 36 H 1.08003 * 119.96655 * 180.02562 * 23 13 12 37 37 H 1.07998 * 120.03643 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2493 5 6 1.6505 0.0391 2.4482 6 7 1.3499 0.6260 3.3733 7 6 2.0324 -0.7105 -1.2304 8 8 2.7296 -1.6966 -1.1189 9 7 1.7068 -0.2501 -2.4544 10 6 2.2508 -0.8506 -3.5953 11 6 2.5540 -0.0798 -4.7099 12 6 3.0957 -0.6748 -5.8324 13 6 3.3259 -2.0382 -5.8512 14 6 3.9114 -2.6850 -7.0800 15 6 2.7980 -3.1142 -8.0006 16 1 1.7695 -2.9360 -7.7237 17 6 3.0926 -3.7334 -9.1967 18 7 2.1210 -4.1075 -10.0003 19 14 4.8717 -4.0410 -9.6759 20 1 5.2984 -5.3697 -9.1682 21 1 4.9979 -4.0125 -11.1553 22 1 5.7331 -2.9855 -9.0852 23 6 3.0199 -2.8093 -4.7450 24 6 2.4834 -2.2196 -3.6172 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8899 28 1 1.6052 -1.7197 1.2953 29 1 3.1262 -0.7994 1.2058 30 1 1.0954 0.4975 -2.5448 31 1 2.3706 0.9844 -4.6973 32 1 3.3359 -0.0752 -6.6981 33 1 4.5540 -1.9711 -7.5952 34 1 4.4974 -3.5563 -6.7878 35 1 2.3283 -4.5435 -10.8417 36 1 3.2012 -3.8739 -4.7626 37 1 2.2450 -2.8223 -2.7534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928401497.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:43 Heat of formation + Delta-G solvation = 3.399219 kcal Electronic energy + Delta-G solvation = -19322.731390 eV Core-core repulsion = 16257.602068 eV Total energy + Delta-G solvation = -3065.129321 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.71227 -38.56137 -37.23142 -35.07399 -34.71066 -32.94918 -30.86300 -30.39924 -28.63482 -27.16184 -24.64477 -22.73096 -22.44064 -20.54222 -19.93786 -18.29468 -17.67597 -16.78249 -16.51218 -16.03944 -15.32900 -14.88009 -14.85406 -14.20202 -14.10327 -13.99287 -13.38953 -13.12475 -12.99573 -12.93832 -12.69135 -12.47300 -12.44949 -12.33826 -11.72364 -11.63452 -11.54391 -11.45760 -10.90424 -10.52114 -10.23835 -10.18948 -9.85984 -9.55608 -9.34366 -8.59582 -8.38692 -7.49625 -6.08757 -4.07892 1.71635 1.96272 2.28222 2.41858 2.52245 2.91933 3.28215 3.36061 3.38732 3.65119 4.12576 4.34030 4.36515 4.40528 4.48638 4.77260 5.13352 5.16096 5.22757 5.25015 5.34199 5.44486 5.48539 5.63566 5.82025 5.89845 5.99155 6.07685 6.52260 6.65923 6.75136 6.92631 7.01579 7.03280 7.16672 7.35374 7.53811 7.57972 7.69521 7.99905 8.48079 8.96437 9.51641 11.04109 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.050331 B = 0.003023 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.181046 B = 9260.638001 C = 9378.683560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.105 4.105 3 H 0.109 0.891 4 C -0.011 4.011 5 C 0.210 3.790 6 N -0.437 5.437 7 C 0.517 3.483 8 O -0.519 6.519 9 N -0.664 5.664 10 C 0.103 3.897 11 C -0.141 4.141 12 C -0.107 4.107 13 C -0.036 4.036 14 C 0.013 3.987 15 C -0.512 4.512 16 H 0.074 0.926 17 C 0.068 3.932 18 N -0.900 5.900 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.107 4.107 24 C -0.115 4.115 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.407 0.593 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.028 0.972 34 H 0.024 0.976 35 H 0.264 0.736 36 H 0.122 0.878 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 9.350 18.090 20.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.128 4.128 3 H 0.127 0.873 4 C -0.051 4.051 5 C -0.108 4.108 6 N -0.114 5.114 7 C 0.304 3.696 8 O -0.394 6.394 9 N -0.308 5.308 10 C 0.011 3.989 11 C -0.161 4.161 12 C -0.125 4.125 13 C -0.036 4.036 14 C -0.024 4.024 15 C -0.550 4.550 16 H 0.092 0.908 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.705 3.295 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.126 4.126 24 C -0.135 4.135 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.242 0.758 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.131 9.452 19.437 21.642 hybrid contribution 0.581 -0.019 -0.887 1.061 sum -0.550 9.433 18.549 20.817 Atomic orbital electron populations 1.21899 0.92020 1.03764 1.03284 1.21229 0.98328 1.01358 0.91842 0.87321 1.19114 1.04360 0.97745 0.83924 1.29116 0.93212 0.93855 0.94583 1.81261 1.09235 1.09519 1.11394 1.20367 0.80234 0.84795 0.84228 1.90746 1.37168 1.25107 1.86355 1.43321 1.47090 1.35879 1.04530 1.17537 1.02459 0.92174 0.86770 1.20749 1.02877 0.98631 0.93814 1.20862 0.99594 0.94957 0.97104 1.20323 0.94914 0.93083 0.95318 1.18817 0.96857 0.95633 0.91059 1.20929 0.93529 1.38558 1.02012 0.90813 1.25007 0.97145 0.95003 0.96157 1.69905 1.31775 1.40833 1.11338 0.86803 0.85768 0.79266 0.77667 1.20147 1.21289 1.18912 1.21005 0.99315 0.99992 0.92283 1.21118 1.00801 0.92737 0.98821 0.91050 0.91246 0.91362 0.86340 0.86131 0.75775 0.86641 0.85914 0.95396 0.95787 0.92610 0.85966 0.85140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 8.89 37.16 0.33 -0.38 16 2 C -0.10 -0.58 2.71 -91.78 -0.25 -0.83 16 3 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 4 C -0.01 -0.06 4.53 -29.52 -0.13 -0.19 16 5 C 0.21 1.60 14.40 -20.76 -0.30 1.30 16 6 N -0.44 -4.67 18.54 42.16 0.78 -3.89 16 7 C 0.52 4.96 7.00 -10.99 -0.08 4.88 16 8 O -0.52 -6.85 13.36 5.55 0.07 -6.78 16 9 N -0.66 -6.63 5.26 -9.86 -0.05 -6.68 16 10 C 0.10 1.48 6.30 -83.69 -0.53 0.96 16 11 C -0.14 -2.06 9.97 -39.39 -0.39 -2.46 16 12 C -0.11 -1.90 9.69 -39.61 -0.38 -2.28 16 13 C -0.04 -0.73 5.07 -104.59 -0.53 -1.26 16 14 C 0.01 0.31 4.17 -29.03 -0.12 0.19 16 15 C -0.51 -14.24 9.65 -34.44 -0.33 -14.57 16 16 H 0.07 2.24 7.98 -52.49 -0.42 1.82 16 17 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 18 N -0.90 -27.20 13.96 55.43 0.77 -26.43 16 19 Si 0.88 21.08 27.47 -169.99 -4.67 16.41 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 23 C -0.11 -2.02 9.69 -39.61 -0.38 -2.41 16 24 C -0.11 -1.91 8.70 -39.39 -0.34 -2.26 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.07 0.26 7.47 -51.93 -0.39 -0.13 16 27 H 0.07 0.33 7.38 -51.93 -0.38 -0.06 16 28 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.12 0.62 7.96 -51.93 -0.41 0.21 16 30 H 0.41 2.69 8.11 -40.82 -0.33 2.36 16 31 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.12 2.08 8.06 -52.48 -0.42 1.66 16 33 H 0.03 0.64 7.14 -51.93 -0.37 0.27 16 34 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.12 2.24 8.06 -52.48 -0.42 1.82 16 37 H 0.13 2.11 6.22 -52.49 -0.33 1.78 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -33.73 322.26 -6.50 -40.23 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -4.73 Total: -0.26 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -3.54 Total: -17.46 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 1.50 Total: -37.00 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: 0.07 Total: -6.78 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -4.67 Total: 16.41 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -33.73 -6.50 -40.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401497.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.629 kcal (2) G-P(sol) polarization free energy of solvation -33.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds