Wall clock time and date at job start Mon Mar 30 2020 01:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47233 * 2 1 4 4 C 1.46502 * 120.00009 * 85.86937 * 3 2 1 5 5 C 1.50707 * 109.46831 * 90.00475 * 4 3 2 6 6 H 1.07999 * 120.00008 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99829 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00213 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47226 * 89.99491 * 9 7 5 11 11 H 1.48497 * 109.47396 * 209.99904 * 9 7 5 12 12 H 1.48505 * 109.47145 * 329.99902 * 9 7 5 13 13 C 1.34772 * 119.99449 * 265.87531 * 3 2 1 14 14 O 1.21553 * 119.99676 * 184.60658 * 13 3 2 15 15 C 1.47867 * 120.00671 * 4.59898 * 13 3 2 16 16 C 1.39328 * 120.06741 * 300.77621 * 15 13 3 17 17 C 1.39358 * 119.69824 * 179.97438 * 16 15 13 18 18 C 1.43201 * 120.08391 * 180.02562 * 17 16 15 19 19 N 5.62767 * 110.91792 * 237.42436 * 2 1 3 20 20 C 1.39758 * 119.83789 * 0.02562 * 17 16 15 21 21 C 1.38044 * 120.13936 * 359.97438 * 20 17 16 22 22 C 1.38102 * 120.30493 * 359.74784 * 21 20 17 23 23 C 1.50705 * 119.92308 * 180.25415 * 22 21 20 24 24 H 1.08999 * 109.46758 * 60.00448 * 1 2 3 25 25 H 1.09000 * 109.46917 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47629 * 300.00424 * 1 2 3 27 27 H 1.08992 * 109.47158 * 239.99440 * 2 1 3 28 28 H 1.09008 * 109.46735 * 119.99854 * 2 1 3 29 29 H 1.08998 * 109.46910 * 209.99729 * 4 3 2 30 30 H 1.08992 * 109.47277 * 330.00580 * 4 3 2 31 31 H 0.96997 * 120.00427 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.15474 * 359.95281 * 16 15 13 33 33 H 1.07999 * 119.92980 * 180.02562 * 20 17 16 34 34 H 1.08004 * 119.84968 * 180.02562 * 21 20 17 35 35 H 1.09000 * 109.46943 * 265.05247 * 23 22 21 36 36 H 1.08998 * 109.46803 * 25.05279 * 23 22 21 37 37 H 1.08997 * 109.47090 * 145.04858 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1764 2.1023 1.2654 5 6 3.5668 1.8772 1.8016 6 1 4.2628 1.2586 1.2547 7 6 3.9501 2.4610 2.9903 8 7 3.1027 3.2148 3.6561 9 14 5.6732 2.1815 3.6553 10 1 6.5822 3.2331 3.1326 11 1 5.6472 2.2422 5.1388 12 1 6.1601 0.8468 3.2230 13 6 2.3221 1.9885 -1.1642 14 8 2.8060 3.1035 -1.1599 15 6 2.0670 1.2983 -2.4468 16 6 2.6744 0.0730 -2.7130 17 6 2.4282 -0.5710 -3.9241 18 6 3.0477 -1.8309 -4.2061 19 7 3.5393 -2.8303 -4.4298 20 6 1.5751 0.0157 -4.8628 21 6 0.9768 1.2300 -4.5921 22 6 1.2123 1.8705 -3.3914 23 6 0.5501 3.1931 -3.1025 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.0196 3.1679 1.0984 30 1 1.4454 1.7360 1.9861 31 1 3.3724 3.6259 4.4922 32 1 3.3334 -0.3756 -1.9844 33 1 1.3829 -0.4822 -5.8017 34 1 0.3181 1.6790 -5.3207 35 1 1.2266 4.0045 -3.3712 36 1 -0.3665 3.2757 -3.6865 37 1 0.3113 3.2556 -2.0408 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930463995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:45 Heat of formation + Delta-G solvation = 16.448230 kcal Electronic energy + Delta-G solvation = -20477.110358 eV Core-core repulsion = 17412.546884 eV Total energy + Delta-G solvation = -3064.563474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.34160 -38.32790 -36.54778 -35.41795 -32.96468 -32.89012 -31.40286 -30.11549 -27.94083 -26.99905 -24.13683 -23.26957 -22.40957 -22.19481 -19.92744 -17.71968 -16.63718 -16.30287 -15.90614 -15.63660 -15.58696 -14.50273 -14.18361 -14.13349 -13.88369 -13.42273 -13.35166 -13.34895 -13.06645 -12.92886 -12.31039 -12.22560 -12.07326 -11.88190 -11.69568 -11.60441 -11.35892 -11.25672 -10.91737 -10.71829 -10.58898 -10.16407 -9.67813 -9.24814 -8.96205 -8.81143 -8.45703 -7.74824 -6.07368 -4.11989 0.58792 1.00374 2.52709 2.70452 3.28229 3.30376 3.36598 3.39297 3.66500 3.70532 3.90176 4.42532 4.61550 4.66917 4.73419 4.97447 5.15911 5.27534 5.34255 5.44398 5.53155 5.61244 5.68372 5.71682 5.79229 5.96626 6.00838 6.06836 6.12031 6.22104 6.37392 6.47284 6.58337 7.00385 7.34652 7.36329 7.46125 7.88447 8.18702 8.30062 8.81937 8.97470 9.53234 11.00742 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019218 B = 0.005384 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.587574 B = 5199.470560 C = 5774.816658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 N -0.587 5.587 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.274 1.274 13 C 0.547 3.453 14 O -0.525 6.525 15 C -0.110 4.110 16 C -0.040 4.040 17 C -0.044 4.044 18 C 0.260 3.740 19 N -0.422 5.422 20 C -0.058 4.058 21 C -0.126 4.126 22 C -0.013 4.013 23 C -0.122 4.122 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.035 0.965 31 H 0.263 0.737 32 H 0.140 0.860 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 -5.110 -14.325 17.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.028 4.028 3 N -0.318 5.318 4 C 0.128 3.872 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.333 3.667 14 O -0.402 6.402 15 C -0.114 4.114 16 C -0.061 4.061 17 C -0.047 4.047 18 C -0.055 4.055 19 N -0.098 5.098 20 C -0.079 4.079 21 C -0.144 4.144 22 C -0.014 4.014 23 C -0.178 4.178 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.297 -5.957 -14.440 17.240 hybrid contribution 0.825 0.127 0.608 1.033 sum -6.471 -5.830 -13.831 16.346 Atomic orbital electron populations 1.22165 0.96510 1.01486 1.02325 1.21682 0.94044 0.84135 1.02984 1.48261 1.62428 1.13419 1.07664 1.19317 0.96934 0.92981 0.77923 1.21410 0.98212 1.30874 1.06050 0.92427 1.24911 0.97533 0.94885 0.96630 1.69921 1.35062 1.32246 1.16117 0.86513 0.84483 0.78662 0.77863 1.20512 1.21141 1.19932 1.18030 0.79559 0.85988 0.83158 1.90796 1.43191 1.19387 1.86836 1.20090 0.99437 0.95075 0.96761 1.21312 0.97091 0.92829 0.94888 1.15806 1.02113 0.90140 0.96676 1.25650 0.93391 0.92769 0.93693 1.81246 1.09186 1.11459 1.07870 1.21195 0.93893 0.94861 0.97916 1.20901 1.01537 0.95176 0.96779 1.20180 0.93223 0.95847 0.92193 1.20931 1.00011 0.93561 1.03333 0.92967 0.92207 0.91988 0.91082 0.89871 0.93841 0.94713 0.92688 0.84188 0.84865 0.84495 0.89596 0.91208 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.10 1.49 5.94 -4.04 -0.02 1.46 16 3 N -0.59 -11.77 2.46 -176.16 -0.43 -12.20 16 4 C 0.25 6.18 5.15 -5.19 -0.03 6.15 16 5 C -0.53 -14.54 9.39 -34.44 -0.32 -14.87 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.01 13.29 55.43 0.74 -25.28 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 13 C 0.55 10.77 5.93 -12.32 -0.07 10.69 16 14 O -0.53 -12.54 16.14 5.32 0.09 -12.45 16 15 C -0.11 -1.62 4.98 -105.02 -0.52 -2.15 16 16 C -0.04 -0.52 7.29 -38.76 -0.28 -0.80 16 17 C -0.04 -0.48 5.73 -106.99 -0.61 -1.09 16 18 C 0.26 3.17 15.32 -22.47 -0.34 2.82 16 19 N -0.42 -6.00 18.54 41.84 0.78 -5.23 16 20 C -0.06 -0.51 9.75 -39.09 -0.38 -0.89 16 21 C -0.13 -1.12 9.64 -39.70 -0.38 -1.50 16 22 C -0.01 -0.15 5.92 -104.14 -0.62 -0.77 16 23 C -0.12 -1.42 9.13 36.01 0.33 -1.09 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.07 0.96 4.20 -51.93 -0.22 0.74 16 28 H 0.08 1.35 8.10 -51.92 -0.42 0.93 16 29 H 0.04 1.22 7.49 -51.93 -0.39 0.83 16 30 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 31 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 32 H 0.14 1.82 7.26 -52.49 -0.38 1.44 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 34 H 0.14 0.82 8.06 -52.48 -0.42 0.39 16 35 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 0.58 8.05 -51.93 -0.42 0.16 16 37 H 0.07 1.04 7.24 -51.93 -0.38 0.66 16 LS Contribution 326.36 15.07 4.92 4.92 Total: -1.00 -32.33 326.36 -6.62 -38.95 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.70 Total: -3.15 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: -2.98 Total: -2.17 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: 1.08 Total: -42.70 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.09 Total: -12.45 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.33 -6.62 -38.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.400 kcal (2) G-P(sol) polarization free energy of solvation -32.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds