Wall clock time and date at job start Mon Mar 30 2020 01:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47233 * 2 1 4 4 C 1.46502 * 120.00009 * 85.86937 * 3 2 1 5 5 C 1.50707 * 109.46831 * 90.00475 * 4 3 2 6 6 H 1.07999 * 120.00008 * 359.97438 * 5 4 3 7 7 C 1.37873 * 119.99829 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00213 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00067 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47226 * 89.99491 * 9 7 5 11 11 H 1.48497 * 109.47396 * 209.99904 * 9 7 5 12 12 H 1.48505 * 109.47145 * 329.99902 * 9 7 5 13 13 C 1.34772 * 119.99449 * 265.87531 * 3 2 1 14 14 O 1.21553 * 119.99676 * 184.60658 * 13 3 2 15 15 C 1.47867 * 120.00671 * 4.59898 * 13 3 2 16 16 C 1.39328 * 120.06741 * 300.77621 * 15 13 3 17 17 C 1.39358 * 119.69824 * 179.97438 * 16 15 13 18 18 C 1.43201 * 120.08391 * 180.02562 * 17 16 15 19 19 N 5.62767 * 110.91792 * 237.42436 * 2 1 3 20 20 C 1.39758 * 119.83789 * 0.02562 * 17 16 15 21 21 C 1.38044 * 120.13936 * 359.97438 * 20 17 16 22 22 C 1.38102 * 120.30493 * 359.74784 * 21 20 17 23 23 C 1.50705 * 119.92308 * 180.25415 * 22 21 20 24 24 H 1.08999 * 109.46758 * 60.00448 * 1 2 3 25 25 H 1.09000 * 109.46917 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47629 * 300.00424 * 1 2 3 27 27 H 1.08992 * 109.47158 * 239.99440 * 2 1 3 28 28 H 1.09008 * 109.46735 * 119.99854 * 2 1 3 29 29 H 1.08998 * 109.46910 * 209.99729 * 4 3 2 30 30 H 1.08992 * 109.47277 * 330.00580 * 4 3 2 31 31 H 0.96997 * 120.00427 * 180.02562 * 8 7 5 32 32 H 1.07997 * 120.15474 * 359.95281 * 16 15 13 33 33 H 1.07999 * 119.92980 * 180.02562 * 20 17 16 34 34 H 1.08004 * 119.84968 * 180.02562 * 21 20 17 35 35 H 1.09000 * 109.46943 * 265.05247 * 23 22 21 36 36 H 1.08998 * 109.46803 * 25.05279 * 23 22 21 37 37 H 1.08997 * 109.47090 * 145.04858 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1764 2.1023 1.2654 5 6 3.5668 1.8772 1.8016 6 1 4.2628 1.2586 1.2547 7 6 3.9501 2.4610 2.9903 8 7 3.1027 3.2148 3.6561 9 14 5.6732 2.1815 3.6553 10 1 6.5822 3.2331 3.1326 11 1 5.6472 2.2422 5.1388 12 1 6.1601 0.8468 3.2230 13 6 2.3221 1.9885 -1.1642 14 8 2.8060 3.1035 -1.1599 15 6 2.0670 1.2983 -2.4468 16 6 2.6744 0.0730 -2.7130 17 6 2.4282 -0.5710 -3.9241 18 6 3.0477 -1.8309 -4.2061 19 7 3.5393 -2.8303 -4.4298 20 6 1.5751 0.0157 -4.8628 21 6 0.9768 1.2300 -4.5921 22 6 1.2123 1.8705 -3.3914 23 6 0.5501 3.1931 -3.1025 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 2.0196 3.1679 1.0984 30 1 1.4454 1.7360 1.9861 31 1 3.3724 3.6259 4.4922 32 1 3.3334 -0.3756 -1.9844 33 1 1.3829 -0.4822 -5.8017 34 1 0.3181 1.6790 -5.3207 35 1 1.2266 4.0045 -3.3712 36 1 -0.3665 3.2757 -3.6865 37 1 0.3113 3.2556 -2.0408 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930463995.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:45 Heat of formation + Delta-G solvation = -2.644816 kcal Electronic energy + Delta-G solvation = -20477.938294 eV Core-core repulsion = 17412.546884 eV Total energy + Delta-G solvation = -3065.391410 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.53876 -39.61455 -37.57691 -37.01499 -34.92905 -33.90457 -32.50973 -31.55007 -29.27237 -28.47339 -25.60186 -24.78251 -23.47379 -23.35389 -21.17554 -19.05566 -18.59302 -17.77578 -17.21234 -16.94882 -16.55193 -16.32462 -15.39134 -15.18045 -15.14597 -14.64843 -14.58187 -14.42837 -14.25774 -14.06846 -13.91897 -13.57831 -13.28687 -13.15770 -13.07454 -12.80142 -12.69055 -12.57940 -12.49845 -12.31227 -12.17561 -11.86098 -11.71719 -10.72882 -10.64707 -9.98919 -9.75263 -9.45718 -8.22942 -6.36994 -0.31120 0.07565 1.35936 1.38548 1.47795 1.55231 1.67891 1.96019 2.26086 2.42429 2.74955 2.85743 3.06959 3.52433 3.76759 3.86961 4.02761 4.14943 4.32172 4.42540 4.55205 4.61105 4.66390 4.76864 4.85482 4.93151 4.97437 5.05101 5.07924 5.19417 5.20479 5.24336 5.37104 5.49719 5.56362 5.75541 5.82777 6.05548 6.40731 6.67157 6.74605 7.25269 7.40885 8.84110 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019218 B = 0.005384 C = 0.004847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.587574 B = 5199.470560 C = 5774.816658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.090 3.910 3 N -0.593 5.593 4 C 0.264 3.736 5 C -0.543 4.543 6 H 0.051 0.949 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.963 3.037 10 H -0.280 1.280 11 H -0.274 1.274 12 H -0.265 1.265 13 C 0.545 3.455 14 O -0.582 6.582 15 C -0.133 4.133 16 C -0.045 4.045 17 C -0.041 4.041 18 C 0.282 3.718 19 N -0.459 5.459 20 C -0.032 4.032 21 C -0.105 4.105 22 C -0.016 4.016 23 C -0.121 4.121 24 H 0.060 0.940 25 H 0.092 0.908 26 H 0.042 0.958 27 H 0.097 0.903 28 H 0.072 0.928 29 H 0.001 0.999 30 H 0.026 0.974 31 H 0.267 0.733 32 H 0.130 0.870 33 H 0.174 0.826 34 H 0.181 0.819 35 H 0.074 0.926 36 H 0.110 0.890 37 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 -6.744 -17.062 20.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.032 4.032 3 N -0.323 5.323 4 C 0.143 3.857 5 C -0.582 4.582 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.788 3.212 10 H -0.206 1.206 11 H -0.199 1.199 12 H -0.189 1.189 13 C 0.334 3.666 14 O -0.463 6.463 15 C -0.137 4.137 16 C -0.066 4.066 17 C -0.044 4.044 18 C -0.032 4.032 19 N -0.135 5.135 20 C -0.052 4.052 21 C -0.123 4.123 22 C -0.018 4.018 23 C -0.177 4.177 24 H 0.079 0.921 25 H 0.110 0.890 26 H 0.061 0.939 27 H 0.115 0.885 28 H 0.090 0.910 29 H 0.019 0.981 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.148 0.852 33 H 0.191 0.809 34 H 0.199 0.801 35 H 0.092 0.908 36 H 0.129 0.871 37 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -8.131 -7.639 -17.190 20.493 hybrid contribution 1.020 0.652 1.384 1.839 sum -7.110 -6.986 -15.806 18.687 Atomic orbital electron populations 1.22086 0.94265 1.03382 1.01795 1.21946 0.95898 0.81626 1.03705 1.48244 1.62732 1.14945 1.06417 1.18740 0.95709 0.91180 0.80085 1.21690 0.99194 1.30889 1.06391 0.93089 1.25779 1.01591 0.94494 0.96913 1.70031 1.37008 1.32961 1.16558 0.85486 0.79372 0.78739 0.77650 1.20610 1.19867 1.18923 1.18811 0.77830 0.85415 0.84588 1.90743 1.45589 1.22050 1.87889 1.19626 1.02734 0.96283 0.95009 1.21134 0.97179 0.92382 0.95926 1.15758 1.02694 0.89558 0.96410 1.25684 0.92468 0.92453 0.92623 1.81283 1.10357 1.12660 1.09157 1.21663 0.91131 0.94157 0.98265 1.21294 1.00874 0.94496 0.95608 1.20354 0.92643 0.95910 0.92890 1.20932 1.01588 0.93339 1.01884 0.92126 0.88960 0.93890 0.88499 0.90987 0.98071 0.95635 0.92366 0.85188 0.80876 0.80125 0.90785 0.87114 0.94066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.03 10.24 71.98 0.74 -3.29 16 2 C 0.09 2.86 5.94 86.38 0.51 3.37 16 3 N -0.59 -25.11 2.46 -829.53 -2.04 -27.15 16 4 C 0.26 14.12 5.15 85.63 0.44 14.56 16 5 C -0.54 -31.38 9.39 25.60 0.24 -31.14 16 6 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.66 5.46 84.65 0.46 1.12 16 8 N -0.93 -55.72 13.29 21.45 0.28 -55.44 16 9 Si 0.96 45.20 29.54 68.60 2.03 47.23 16 10 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 11 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 12 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 13 C 0.55 22.55 5.93 86.79 0.51 23.07 16 14 O -0.58 -29.79 16.14 -3.88 -0.06 -29.85 16 15 C -0.13 -3.86 4.98 -20.12 -0.10 -3.96 16 16 C -0.05 -1.10 7.29 22.80 0.17 -0.94 16 17 C -0.04 -0.75 5.73 -21.40 -0.12 -0.87 16 18 C 0.28 6.10 15.32 88.33 1.35 7.46 16 19 N -0.46 -12.12 18.54 19.00 0.35 -11.77 16 20 C -0.03 -0.38 9.75 22.59 0.22 -0.16 16 21 C -0.11 -1.30 9.64 22.19 0.21 -1.09 16 22 C -0.02 -0.36 5.92 -19.55 -0.12 -0.47 16 23 C -0.12 -2.69 9.13 71.24 0.65 -2.04 16 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.10 2.56 4.20 -2.39 -0.01 2.55 16 28 H 0.07 2.41 8.10 -2.38 -0.02 2.39 16 29 H 0.00 0.07 7.49 -2.39 -0.02 0.05 16 30 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 31 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.13 3.36 7.26 -2.91 -0.02 3.34 16 33 H 0.17 0.85 8.06 -2.91 -0.02 0.82 16 34 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.11 1.48 8.05 -2.39 -0.02 1.46 16 37 H 0.04 1.19 7.24 -2.39 -0.02 1.17 16 Total: -1.00 -76.01 326.36 6.82 -69.19 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: 1.08 Total: 2.17 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 5.17 Total: 5.61 kcal Atomic # 7 Polarization: -92.95 SS G_CDS: -1.40 Total: -94.35 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: -0.06 Total: -29.85 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -76.01 6.82 -69.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930463995.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.549 kcal (2) G-P(sol) polarization free energy of solvation -76.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds