Wall clock time and date at job start Mon Mar 30 2020 01:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46865 * 2 1 4 4 C 1.36956 * 120.00175 * 273.99524 * 3 2 1 5 5 H 1.08001 * 120.00029 * 176.47138 * 4 3 2 6 6 C 1.38990 * 120.00084 * 356.46859 * 4 3 2 7 7 N 1.31404 * 119.99558 * 28.69461 * 6 4 3 8 8 Si 1.86801 * 120.00150 * 208.69268 * 6 4 3 9 9 H 1.48495 * 109.46761 * 90.00099 * 8 6 4 10 10 H 1.48496 * 109.46964 * 210.00240 * 8 6 4 11 11 H 1.48499 * 109.46945 * 329.99996 * 8 6 4 12 12 C 1.34780 * 120.00053 * 93.99151 * 3 2 1 13 13 O 1.21617 * 120.00460 * 184.87188 * 12 3 2 14 14 C 1.47418 * 119.99634 * 4.87790 * 12 3 2 15 15 C 1.41221 * 126.38047 * 333.45303 * 14 12 3 16 16 C 1.37989 * 106.87293 * 180.02562 * 15 14 12 17 17 C 1.41389 * 131.97089 * 179.97438 * 16 15 14 18 18 C 1.50703 * 120.33542 * 359.97438 * 17 16 15 19 19 C 1.35747 * 119.33304 * 180.02562 * 17 16 15 20 20 C 1.40830 * 119.71782 * 359.97438 * 19 17 16 21 21 C 1.34538 * 120.58638 * 0.23104 * 20 19 17 22 22 N 1.37435 * 120.73935 * 359.53803 * 21 20 19 23 23 C 1.35150 * 131.27499 * 180.15041 * 22 21 20 24 24 H 1.08998 * 109.46906 * 61.48370 * 1 2 3 25 25 H 1.09002 * 109.46897 * 181.48144 * 1 2 3 26 26 H 1.08997 * 109.46761 * 301.47783 * 1 2 3 27 27 H 1.09005 * 109.47098 * 240.00561 * 2 1 3 28 28 H 1.08993 * 109.47139 * 119.99875 * 2 1 3 29 29 H 0.97004 * 119.99497 * 179.97438 * 7 6 4 30 30 H 1.08003 * 126.56045 * 0.03333 * 15 14 12 31 31 H 1.08998 * 109.46600 * 90.00282 * 18 17 16 32 32 H 1.09002 * 109.47265 * 210.00456 * 18 17 16 33 33 H 1.08996 * 109.46871 * 330.00559 * 18 17 16 34 34 H 1.08001 * 120.14033 * 179.97438 * 19 17 16 35 35 H 1.08004 * 119.70598 * 180.02562 * 20 19 17 36 36 H 1.07998 * 119.63358 * 179.68745 * 21 20 19 37 37 H 1.07993 * 125.62584 * 0.30681 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1687 2.0545 -1.1832 5 1 2.4739 3.0904 -1.1800 6 6 1.9285 1.4045 -2.3880 7 7 1.0650 0.4153 -2.4400 8 14 2.8330 1.9370 -3.9332 9 1 4.0976 1.1684 -4.0561 10 1 1.9792 1.6787 -5.1204 11 1 3.1411 3.3874 -3.8513 12 6 2.3196 1.9896 1.1644 13 8 2.6398 3.1628 1.1726 14 6 2.2609 1.2327 2.4281 15 6 1.4546 0.1037 2.6916 16 6 1.7157 -0.2805 3.9910 17 6 1.2068 -1.3329 4.7862 18 6 0.1801 -2.2829 4.2253 19 6 1.6514 -1.4785 6.0605 20 6 2.6107 -0.5830 6.5718 21 6 3.0870 0.4183 5.8099 22 7 2.6553 0.5827 4.5155 23 6 2.9853 1.4951 3.5747 24 1 -0.3633 0.4906 -0.9030 25 1 -0.3633 -1.0274 0.0266 26 1 -0.3633 0.5366 0.8764 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 0.8971 -0.0381 -3.2810 30 1 0.7655 -0.3687 2.0071 31 1 0.6847 -3.1277 3.7565 32 1 -0.4599 -2.6432 5.0307 33 1 -0.4269 -1.7648 3.4829 34 1 1.2712 -2.2775 6.6796 35 1 2.9646 -0.6992 7.5855 36 1 3.8186 1.0992 6.2192 37 1 3.6975 2.2974 3.6989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930618449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:42 Heat of formation + Delta-G solvation = 67.618422 kcal Electronic energy + Delta-G solvation = -20864.202038 eV Core-core repulsion = 17801.857470 eV Total energy + Delta-G solvation = -3062.344568 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.86772 -38.44347 -36.28551 -35.02035 -33.92990 -31.84756 -30.06237 -29.40382 -28.07008 -26.73431 -25.24516 -22.83476 -21.99424 -21.67415 -20.85953 -18.74630 -17.27712 -16.65665 -16.15391 -15.80191 -15.16643 -14.89270 -14.31200 -14.08188 -14.00687 -13.57683 -13.47548 -13.15788 -12.95156 -12.52943 -12.06999 -11.91614 -11.52794 -11.49308 -11.30011 -11.08530 -10.94458 -10.90039 -10.68412 -10.32226 -10.14766 -10.00503 -9.57648 -8.74338 -8.40878 -7.98555 -7.78732 -6.99451 -6.37066 -3.68508 0.99022 1.64671 2.83872 3.00463 3.23733 3.28592 3.34008 3.67857 4.14415 4.39802 4.63233 4.81709 4.93292 5.03782 5.08485 5.18279 5.37310 5.48764 5.63405 5.68162 5.87775 5.90188 6.06864 6.10160 6.22073 6.31398 6.34078 6.57670 6.66934 6.73262 6.75315 6.85307 7.18678 7.24544 7.37189 7.52769 7.62397 7.84290 8.15475 8.56848 9.22623 9.49297 10.10035 10.60507 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030237 B = 0.005245 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.802787 B = 5336.838743 C = 6041.415211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.100 3.900 3 N -0.425 5.425 4 C -0.305 4.305 5 H 0.108 0.892 6 C 0.033 3.967 7 N -0.854 5.854 8 Si 0.916 3.084 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.269 1.269 12 C 0.496 3.504 13 O -0.601 6.601 14 C -0.124 4.124 15 C -0.177 4.177 16 C 0.016 3.984 17 C -0.037 4.037 18 C -0.110 4.110 19 C -0.154 4.154 20 C -0.144 4.144 21 C 0.038 3.962 22 N -0.343 5.343 23 C -0.011 4.011 24 H 0.096 0.904 25 H 0.037 0.963 26 H 0.027 0.973 27 H 0.097 0.903 28 H 0.057 0.943 29 H 0.267 0.733 30 H 0.168 0.832 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.138 0.862 36 H 0.155 0.845 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 -7.988 13.403 15.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.023 4.023 3 N -0.141 5.141 4 C -0.432 4.432 5 H 0.125 0.875 6 C -0.170 4.170 7 N -0.493 5.493 8 Si 0.743 3.257 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.193 1.193 12 C 0.285 3.715 13 O -0.488 6.488 14 C -0.131 4.131 15 C -0.202 4.202 16 C -0.087 4.087 17 C -0.038 4.038 18 C -0.167 4.167 19 C -0.174 4.174 20 C -0.165 4.165 21 C -0.081 4.081 22 N -0.007 5.007 23 C -0.144 4.144 24 H 0.115 0.885 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.115 0.885 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.185 0.815 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.144 0.856 35 H 0.156 0.844 36 H 0.172 0.828 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 0.123 -7.499 13.405 15.360 hybrid contribution 0.415 0.128 -0.652 0.783 sum 0.538 -7.371 12.753 14.740 Atomic orbital electron populations 1.22188 0.96662 0.99522 1.02506 1.22054 0.94634 0.83785 1.01859 1.43681 1.53707 1.11803 1.04884 1.19771 1.43491 0.98136 0.81790 0.87458 1.25221 0.95899 0.96667 0.99253 1.70208 1.27889 1.24128 1.27094 0.86084 0.79758 0.79490 0.80412 1.20376 1.21153 1.19336 1.16967 0.85886 0.86478 0.82157 1.90583 1.55689 1.16111 1.86441 1.20010 1.00044 0.97951 0.95116 1.22048 1.05125 0.99270 0.93758 1.18697 0.98666 0.96325 0.95001 1.19340 0.97099 0.94176 0.93166 1.20720 0.96721 0.97799 1.01463 1.20665 1.00189 1.01107 0.95485 1.20528 0.99865 0.95865 1.00200 1.21550 1.02012 1.01237 0.83289 1.41265 1.28686 1.21707 1.09074 1.21936 1.06901 0.97741 0.87783 0.88525 0.94435 0.95388 0.88470 0.92469 0.92232 0.81490 0.90612 0.91267 0.90748 0.85561 0.84380 0.82758 0.80872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 8.43 37.16 0.31 -2.91 16 2 C 0.10 2.29 4.88 -4.04 -0.02 2.28 16 3 N -0.42 -11.23 2.63 -116.02 -0.30 -11.54 16 4 C -0.30 -8.54 9.43 -14.98 -0.14 -8.68 16 5 H 0.11 3.19 7.31 -52.49 -0.38 2.81 16 6 C 0.03 0.86 5.01 -17.46 -0.09 0.77 16 7 N -0.85 -21.56 8.19 55.50 0.45 -21.11 16 8 Si 0.92 20.42 29.64 -169.99 -5.04 15.38 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 12 C 0.50 13.07 7.58 -12.52 -0.09 12.98 16 13 O -0.60 -17.69 16.58 5.26 0.09 -17.60 16 14 C -0.12 -2.72 5.70 -105.06 -0.60 -3.32 16 15 C -0.18 -3.41 7.71 -38.54 -0.30 -3.71 16 16 C 0.02 0.28 6.60 -84.00 -0.55 -0.28 16 17 C -0.04 -0.50 5.91 -104.31 -0.62 -1.12 16 18 C -0.11 -1.20 9.91 36.01 0.36 -0.84 16 19 C -0.15 -1.79 9.72 -39.49 -0.38 -2.17 16 20 C -0.14 -1.57 9.97 -39.91 -0.40 -1.97 16 21 C 0.04 0.48 10.89 -16.35 -0.18 0.30 16 22 N -0.34 -5.69 2.92 -60.39 -0.18 -5.86 16 23 C -0.01 -0.21 11.47 -16.13 -0.18 -0.39 16 24 H 0.10 2.35 6.17 -51.93 -0.32 2.03 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.03 0.58 6.98 -51.93 -0.36 0.21 16 27 H 0.10 2.38 5.85 -51.93 -0.30 2.08 16 28 H 0.06 1.21 4.42 -51.93 -0.23 0.98 16 29 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 30 H 0.17 3.09 3.78 -52.48 -0.20 2.90 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 33 H 0.07 0.85 7.70 -51.93 -0.40 0.45 16 34 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.17 2.98 8.06 -52.49 -0.42 2.56 16 LS Contribution 301.59 15.07 4.54 4.54 Total: -1.00 -31.76 301.59 -7.61 -39.36 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.29 Total: 5.87 kcal Atomic # 6 Polarization: -6.16 SS G_CDS: -2.88 Total: -9.04 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: -0.03 Total: -38.51 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.09 Total: -17.60 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.04 Total: 15.38 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -31.76 -7.61 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930618449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.980 kcal (2) G-P(sol) polarization free energy of solvation -31.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds