Wall clock time and date at job start Mon Mar 30 2020 01:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46865 * 2 1 4 4 C 1.36956 * 120.00175 * 273.99524 * 3 2 1 5 5 H 1.08001 * 120.00029 * 176.47138 * 4 3 2 6 6 C 1.38990 * 120.00084 * 356.46859 * 4 3 2 7 7 N 1.31404 * 119.99558 * 28.69461 * 6 4 3 8 8 Si 1.86801 * 120.00150 * 208.69268 * 6 4 3 9 9 H 1.48495 * 109.46761 * 90.00099 * 8 6 4 10 10 H 1.48496 * 109.46964 * 210.00240 * 8 6 4 11 11 H 1.48499 * 109.46945 * 329.99996 * 8 6 4 12 12 C 1.34780 * 120.00053 * 93.99151 * 3 2 1 13 13 O 1.21617 * 120.00460 * 184.87188 * 12 3 2 14 14 C 1.47418 * 119.99634 * 4.87790 * 12 3 2 15 15 C 1.41221 * 126.38047 * 333.45303 * 14 12 3 16 16 C 1.37989 * 106.87293 * 180.02562 * 15 14 12 17 17 C 1.41389 * 131.97089 * 179.97438 * 16 15 14 18 18 C 1.50703 * 120.33542 * 359.97438 * 17 16 15 19 19 C 1.35747 * 119.33304 * 180.02562 * 17 16 15 20 20 C 1.40830 * 119.71782 * 359.97438 * 19 17 16 21 21 C 1.34538 * 120.58638 * 0.23104 * 20 19 17 22 22 N 1.37435 * 120.73935 * 359.53803 * 21 20 19 23 23 C 1.35150 * 131.27499 * 180.15041 * 22 21 20 24 24 H 1.08998 * 109.46906 * 61.48370 * 1 2 3 25 25 H 1.09002 * 109.46897 * 181.48144 * 1 2 3 26 26 H 1.08997 * 109.46761 * 301.47783 * 1 2 3 27 27 H 1.09005 * 109.47098 * 240.00561 * 2 1 3 28 28 H 1.08993 * 109.47139 * 119.99875 * 2 1 3 29 29 H 0.97004 * 119.99497 * 179.97438 * 7 6 4 30 30 H 1.08003 * 126.56045 * 0.03333 * 15 14 12 31 31 H 1.08998 * 109.46600 * 90.00282 * 18 17 16 32 32 H 1.09002 * 109.47265 * 210.00456 * 18 17 16 33 33 H 1.08996 * 109.46871 * 330.00559 * 18 17 16 34 34 H 1.08001 * 120.14033 * 179.97438 * 19 17 16 35 35 H 1.08004 * 119.70598 * 180.02562 * 20 19 17 36 36 H 1.07998 * 119.63358 * 179.68745 * 21 20 19 37 37 H 1.07993 * 125.62584 * 0.30681 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1687 2.0545 -1.1832 5 1 2.4739 3.0904 -1.1800 6 6 1.9285 1.4045 -2.3880 7 7 1.0650 0.4153 -2.4400 8 14 2.8330 1.9370 -3.9332 9 1 4.0976 1.1684 -4.0561 10 1 1.9792 1.6787 -5.1204 11 1 3.1411 3.3874 -3.8513 12 6 2.3196 1.9896 1.1644 13 8 2.6398 3.1628 1.1726 14 6 2.2609 1.2327 2.4281 15 6 1.4546 0.1037 2.6916 16 6 1.7157 -0.2805 3.9910 17 6 1.2068 -1.3329 4.7862 18 6 0.1801 -2.2829 4.2253 19 6 1.6514 -1.4785 6.0605 20 6 2.6107 -0.5830 6.5718 21 6 3.0870 0.4183 5.8099 22 7 2.6553 0.5827 4.5155 23 6 2.9853 1.4951 3.5747 24 1 -0.3633 0.4906 -0.9030 25 1 -0.3633 -1.0274 0.0266 26 1 -0.3633 0.5366 0.8764 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 0.8971 -0.0381 -3.2810 30 1 0.7655 -0.3687 2.0071 31 1 0.6847 -3.1277 3.7565 32 1 -0.4599 -2.6432 5.0307 33 1 -0.4269 -1.7648 3.4829 34 1 1.2712 -2.2775 6.6796 35 1 2.9646 -0.6992 7.5855 36 1 3.8186 1.0992 6.2192 37 1 3.6975 2.2974 3.6989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930618449.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:42 Heat of formation + Delta-G solvation = 49.713349 kcal Electronic energy + Delta-G solvation = -20864.978460 eV Core-core repulsion = 17801.857470 eV Total energy + Delta-G solvation = -3063.120990 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.14379 -40.30615 -37.48179 -37.02674 -35.08932 -33.75902 -31.59050 -31.03363 -29.31109 -27.81081 -27.09009 -24.42378 -23.68245 -22.91291 -22.17505 -20.40687 -18.87215 -18.35192 -17.64031 -17.08663 -16.55365 -16.43541 -15.87747 -15.87530 -15.50348 -15.17927 -14.75503 -14.56287 -14.05702 -13.83878 -13.80265 -13.39609 -13.04031 -12.86921 -12.81935 -12.59359 -12.49625 -12.24366 -12.15707 -12.05516 -12.00360 -11.61888 -10.93855 -10.72848 -10.42797 -9.79072 -9.41923 -8.37644 -8.18473 -5.78860 -0.07075 0.46194 1.22879 1.42387 1.50195 1.54576 1.79644 2.28816 2.50445 2.61830 3.05596 3.20254 3.70678 3.82103 3.98210 4.11750 4.17671 4.29140 4.46808 4.56215 4.65986 4.82037 4.86817 4.89022 4.90873 4.94048 5.02877 5.14279 5.20633 5.30391 5.41420 5.50489 5.53922 5.54110 5.78335 5.96240 5.99476 6.11287 6.40904 6.56242 7.18187 7.49394 8.09929 8.59022 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030237 B = 0.005245 C = 0.004634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.802787 B = 5336.838743 C = 6041.415211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.105 3.895 3 N -0.434 5.434 4 C -0.357 4.357 5 H 0.073 0.927 6 C 0.011 3.989 7 N -0.854 5.854 8 Si 0.981 3.019 9 H -0.270 1.270 10 H -0.268 1.268 11 H -0.279 1.279 12 C 0.481 3.519 13 O -0.652 6.652 14 C -0.163 4.163 15 C -0.203 4.203 16 C 0.024 3.976 17 C -0.065 4.065 18 C -0.109 4.109 19 C -0.131 4.131 20 C -0.126 4.126 21 C 0.013 3.987 22 N -0.340 5.340 23 C -0.022 4.022 24 H 0.066 0.934 25 H 0.071 0.929 26 H 0.026 0.974 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.277 0.723 30 H 0.167 0.833 31 H 0.084 0.916 32 H 0.097 0.903 33 H 0.060 0.940 34 H 0.167 0.833 35 H 0.185 0.815 36 H 0.185 0.815 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.234 -10.956 16.031 19.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.017 4.017 3 N -0.149 5.149 4 C -0.484 4.484 5 H 0.091 0.909 6 C -0.193 4.193 7 N -0.491 5.491 8 Si 0.805 3.195 9 H -0.196 1.196 10 H -0.192 1.192 11 H -0.204 1.204 12 C 0.272 3.728 13 O -0.543 6.543 14 C -0.170 4.170 15 C -0.227 4.227 16 C -0.081 4.081 17 C -0.066 4.066 18 C -0.165 4.165 19 C -0.151 4.151 20 C -0.145 4.145 21 C -0.105 4.105 22 N -0.003 5.003 23 C -0.156 4.156 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.087 0.913 30 H 0.184 0.816 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.079 0.921 34 H 0.184 0.816 35 H 0.203 0.797 36 H 0.202 0.798 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.058 -10.519 16.041 19.182 hybrid contribution 0.430 0.903 -1.207 1.567 sum 0.372 -9.616 14.834 17.682 Atomic orbital electron populations 1.21998 0.95413 1.01168 1.00829 1.22102 0.95564 0.82172 1.01886 1.43880 1.53660 1.12796 1.04593 1.19603 1.47364 0.97756 0.83695 0.90920 1.25897 0.95551 0.96691 1.01172 1.70264 1.26775 1.23743 1.28277 0.85145 0.78798 0.78464 0.77137 1.19558 1.19234 1.20435 1.17715 0.85035 0.86385 0.83665 1.90501 1.57917 1.18355 1.87530 1.19693 1.03313 0.99799 0.94208 1.21892 1.06059 0.99308 0.95447 1.19075 0.97892 0.96689 0.94465 1.19716 0.98671 0.94180 0.94047 1.20779 0.96329 0.97269 1.02172 1.21288 0.98265 1.01016 0.94571 1.21206 0.97904 0.93752 1.01686 1.22344 1.03296 1.03056 0.81758 1.41419 1.28130 1.20657 1.10089 1.21840 1.07217 0.98681 0.87842 0.91490 0.91070 0.95510 0.90112 0.90505 0.91294 0.81603 0.89773 0.88435 0.92081 0.81556 0.79749 0.79805 0.80352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.95 8.43 71.98 0.61 -5.34 16 2 C 0.10 5.02 4.88 86.38 0.42 5.44 16 3 N -0.43 -24.52 2.63 -639.23 -1.68 -26.20 16 4 C -0.36 -21.40 9.43 84.07 0.79 -20.60 16 5 H 0.07 4.74 7.31 -2.91 -0.02 4.72 16 6 C 0.01 0.61 5.01 84.94 0.43 1.03 16 7 N -0.85 -43.70 8.19 21.67 0.18 -43.52 16 8 Si 0.98 42.86 29.64 68.60 2.03 44.89 16 9 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 10 H -0.27 -10.87 7.11 99.48 0.71 -10.17 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.48 27.38 7.58 86.66 0.66 28.04 16 13 O -0.65 -41.79 16.58 -4.08 -0.07 -41.86 16 14 C -0.16 -7.56 5.70 -20.15 -0.11 -7.67 16 15 C -0.20 -8.01 7.71 22.94 0.18 -7.84 16 16 C 0.02 0.80 6.60 38.90 0.26 1.05 16 17 C -0.07 -1.56 5.91 -19.67 -0.12 -1.68 16 18 C -0.11 -2.01 9.91 71.24 0.71 -1.31 16 19 C -0.13 -2.29 9.72 22.33 0.22 -2.07 16 20 C -0.13 -2.01 9.97 22.06 0.22 -1.80 16 21 C 0.01 0.28 10.89 82.97 0.90 1.18 16 22 N -0.34 -10.88 2.92 -344.98 -1.01 -11.89 16 23 C -0.02 -0.88 11.47 84.16 0.97 0.08 16 24 H 0.07 3.34 6.17 -2.39 -0.01 3.32 16 25 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 26 H 0.03 1.14 6.98 -2.39 -0.02 1.13 16 27 H 0.08 4.07 5.85 -2.38 -0.01 4.06 16 28 H 0.08 3.37 4.42 -2.39 -0.01 3.36 16 29 H 0.28 13.05 8.31 -92.71 -0.77 12.28 16 30 H 0.17 6.31 3.78 -2.91 -0.01 6.30 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.10 1.23 8.09 -2.39 -0.02 1.21 16 33 H 0.06 1.30 7.70 -2.39 -0.02 1.28 16 34 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 35 H 0.19 1.34 8.06 -2.91 -0.02 1.31 16 36 H 0.18 2.77 8.06 -2.91 -0.02 2.74 16 37 H 0.18 6.52 8.06 -2.91 -0.02 6.49 16 Total: -1.00 -75.80 301.59 6.67 -69.13 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: 1.09 Total: 20.93 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 6.12 Total: -11.48 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -2.51 Total: -81.61 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -0.07 Total: -41.86 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -75.80 6.67 -69.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930618449.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.846 kcal (2) G-P(sol) polarization free energy of solvation -75.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds