Wall clock time and date at job start Mon Mar 30 2020 01:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46499 * 2 1 4 4 C 1.50699 * 109.47162 * 119.99322 * 2 1 3 5 5 H 1.07994 * 120.00058 * 120.00386 * 4 2 1 6 6 C 1.37885 * 120.00074 * 300.00670 * 4 2 1 7 7 N 1.31511 * 119.99874 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99944 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47252 * 89.99565 * 8 6 4 10 10 H 1.48500 * 109.47115 * 209.99699 * 8 6 4 11 11 H 1.48501 * 109.47026 * 329.99747 * 8 6 4 12 12 N 1.46899 * 109.47407 * 239.99753 * 2 1 3 13 13 C 1.46895 * 111.00085 * 84.99456 * 12 2 1 14 14 C 1.50702 * 109.47077 * 179.97438 * 13 12 2 15 15 C 1.34549 * 126.35783 * 89.71871 * 14 13 12 16 16 N 1.34154 * 107.83702 * 180.26603 * 15 14 13 17 17 C 1.31222 * 108.64708 * 359.97438 * 16 15 14 18 18 C 1.47832 * 125.72357 * 180.02562 * 17 16 15 19 19 C 1.39573 * 120.14193 * 179.69672 * 18 17 16 20 20 C 1.37960 * 119.85582 * 179.74666 * 19 18 17 21 21 C 1.38357 * 120.13814 * 0.55140 * 20 19 18 22 22 C 1.38360 * 120.29582 * 359.70070 * 21 20 19 23 23 C 1.37958 * 120.14280 * 0.02562 * 22 21 20 24 24 O 1.34420 * 108.55012 * 0.02562 * 17 16 15 25 25 H 1.09005 * 109.47487 * 60.00606 * 1 2 3 26 26 H 1.09005 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47595 * 300.00200 * 1 2 3 28 28 H 0.96998 * 119.99984 * 179.97438 * 7 6 4 29 29 H 1.00896 * 110.99925 * 208.95034 * 12 2 1 30 30 H 1.09005 * 109.47276 * 60.00276 * 13 12 2 31 31 H 1.08995 * 109.47876 * 300.00706 * 13 12 2 32 32 H 1.08004 * 126.08384 * 0.21931 * 15 14 13 33 33 H 1.08005 * 120.07287 * 359.97438 * 19 18 17 34 34 H 1.07995 * 119.92900 * 180.29690 * 20 19 18 35 35 H 1.08000 * 119.85014 * 179.72135 * 21 20 19 36 36 H 1.08000 * 119.92667 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.07695 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3212 -1.1199 4.0081 9 1 3.6295 -0.5455 4.4125 10 1 1.3429 -0.9488 5.1121 11 1 2.4858 -2.5658 3.7122 12 7 2.0197 -0.6925 -1.1994 13 6 2.0824 0.2224 -2.3469 14 6 2.5886 -0.5217 -3.5556 15 6 1.8393 -1.1822 -4.4572 16 7 2.6670 -1.7105 -5.3713 17 6 3.9000 -1.3916 -5.0550 18 6 5.1119 -1.7786 -5.8079 19 6 6.3712 -1.3682 -5.3678 20 6 7.4987 -1.7371 -6.0721 21 6 7.3821 -2.5026 -7.2187 22 6 6.1362 -2.9083 -7.6633 23 6 5.0013 -2.5509 -6.9651 24 8 3.8761 -0.6540 -3.9314 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7086 1.1616 3.4843 29 1 2.9174 -1.1204 -1.0286 30 1 2.7588 1.0461 -2.1183 31 1 1.0871 0.6162 -2.5526 32 1 0.7631 -1.2719 -4.4464 33 1 6.4632 -0.7662 -4.4758 34 1 8.4741 -1.4242 -5.7300 35 1 8.2674 -2.7849 -7.7690 36 1 6.0521 -3.5061 -8.5588 37 1 4.0294 -2.8686 -7.3129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930868997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:14 Heat of formation + Delta-G solvation = 47.158624 kcal Electronic energy + Delta-G solvation = -19419.181102 eV Core-core repulsion = 16355.949331 eV Total energy + Delta-G solvation = -3063.231771 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.11334 -39.20180 -36.18304 -34.62412 -33.13803 -32.13883 -31.18966 -30.10687 -27.79706 -25.49620 -24.65666 -23.48200 -22.66231 -21.49891 -20.76499 -19.91431 -17.93914 -16.78734 -16.50547 -16.24873 -15.50575 -15.12258 -14.86547 -14.35554 -14.16936 -13.72011 -13.65872 -13.59098 -13.06658 -12.86294 -12.46807 -12.02506 -11.68553 -11.37329 -11.30178 -11.24613 -10.95911 -10.86292 -10.59468 -10.28647 -10.22454 -10.12167 -9.70142 -9.22269 -8.93839 -8.55570 -8.12771 -7.48441 -6.09832 -4.16738 0.55816 1.14327 1.88270 2.66513 2.86142 3.26047 3.32935 3.37218 3.64867 3.96921 4.35383 4.64707 4.69809 4.85895 4.99602 5.15354 5.20810 5.23255 5.25168 5.35254 5.47744 5.63108 5.77365 5.79787 5.98530 6.14479 6.21721 6.24267 6.26715 6.47191 6.64853 6.75743 7.02652 7.09812 7.35320 7.69540 7.77259 7.81887 8.15348 8.22184 8.49573 8.91373 9.49528 10.96522 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027397 B = 0.003373 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.773652 B = 8298.930943 C = 8996.738434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.212 3.788 3 H 0.005 0.995 4 C -0.521 4.521 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.682 5.682 13 C 0.140 3.860 14 C -0.014 4.014 15 C -0.030 4.030 16 N -0.467 5.467 17 C 0.208 3.792 18 C -0.006 4.006 19 C -0.092 4.092 20 C -0.121 4.121 21 C -0.108 4.108 22 C -0.123 4.123 23 C -0.075 4.075 24 O -0.195 6.195 25 H 0.006 0.994 26 H 0.034 0.966 27 H 0.083 0.917 28 H 0.262 0.738 29 H 0.335 0.665 30 H 0.042 0.958 31 H 0.102 0.898 32 H 0.187 0.813 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.559 -3.406 -18.041 20.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.105 3.895 3 H 0.022 0.978 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.315 5.315 13 C 0.011 3.989 14 C -0.068 4.068 15 C -0.171 4.171 16 N -0.197 5.197 17 C 0.005 3.995 18 C -0.008 4.008 19 C -0.112 4.112 20 C -0.139 4.139 21 C -0.127 4.127 22 C -0.140 4.140 23 C -0.095 4.095 24 O -0.081 6.081 25 H 0.025 0.975 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.153 0.847 30 H 0.060 0.940 31 H 0.120 0.880 32 H 0.204 0.796 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.700 -3.856 -18.534 20.834 hybrid contribution 1.095 0.516 1.784 2.156 sum 9.794 -3.340 -16.750 19.689 Atomic orbital electron populations 1.21744 0.97515 0.99639 0.99580 1.19174 0.92849 0.92449 0.85016 0.97752 1.21223 1.31755 1.12707 0.90297 0.92124 1.24910 0.94927 0.94980 0.99087 1.69885 1.36411 1.22818 1.23654 0.86489 0.78493 0.80098 0.82304 1.20694 1.21108 1.19787 1.60888 1.32583 1.32430 1.05587 1.20460 0.99994 0.92590 0.85886 1.23964 0.79695 1.03216 0.99923 1.23024 1.01165 1.00188 0.92698 1.70551 0.99411 1.22165 1.27526 1.23616 0.93732 0.95751 0.86380 1.17312 0.87645 1.00809 0.95002 1.21305 0.91191 0.98814 0.99883 1.21078 0.98403 0.98791 0.95602 1.21337 0.97739 0.97273 0.96308 1.21100 0.92060 1.00617 1.00271 1.21189 0.99858 0.95546 0.92860 1.84440 1.30252 1.56578 1.36875 0.97544 0.94713 0.89858 0.92795 0.84725 0.94023 0.88039 0.79595 0.85075 0.85298 0.85633 0.85227 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 9.19 37.16 0.34 -2.70 16 2 C 0.21 5.23 2.60 -68.87 -0.18 5.05 16 3 H 0.00 0.13 7.80 -51.93 -0.41 -0.28 16 4 C -0.52 -14.13 8.59 -34.44 -0.30 -14.42 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -24.96 11.32 55.43 0.63 -24.33 16 8 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 12 N -0.68 -14.41 6.29 -109.22 -0.69 -15.10 16 13 C 0.14 2.48 6.03 -4.98 -0.03 2.45 16 14 C -0.01 -0.24 6.90 -35.61 -0.25 -0.49 16 15 C -0.03 -0.48 11.79 -17.84 -0.21 -0.69 16 16 N -0.47 -7.70 10.91 -11.72 -0.13 -7.83 16 17 C 0.21 3.30 7.90 -13.89 -0.11 3.19 16 18 C -0.01 -0.08 5.87 -104.98 -0.62 -0.70 16 19 C -0.09 -1.04 9.72 -39.19 -0.38 -1.42 16 20 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 21 C -0.11 -0.86 10.04 -39.49 -0.40 -1.26 16 22 C -0.12 -1.05 10.03 -39.64 -0.40 -1.45 16 23 C -0.08 -0.83 9.69 -39.19 -0.38 -1.21 16 24 O -0.20 -3.31 10.52 4.08 0.04 -3.26 16 25 H 0.01 0.12 7.45 -51.93 -0.39 -0.27 16 26 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.67 16 29 H 0.34 7.16 8.22 -39.29 -0.32 6.83 16 30 H 0.04 0.74 8.06 -51.93 -0.42 0.32 16 31 H 0.10 1.68 7.44 -51.93 -0.39 1.29 16 32 H 0.19 2.57 8.06 -52.48 -0.42 2.15 16 33 H 0.13 1.43 7.90 -52.48 -0.41 1.02 16 34 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 37 H 0.14 1.49 7.83 -52.49 -0.41 1.08 16 LS Contribution 320.65 15.07 4.83 4.83 Total: -1.00 -29.69 320.65 -8.43 -38.12 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.71 Total: 5.02 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -3.39 Total: -13.49 kcal Atomic # 7 Polarization: -47.07 SS G_CDS: -0.19 Total: -47.26 kcal Atomic # 8 Polarization: -3.31 SS G_CDS: 0.04 Total: -3.26 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.69 -8.43 -38.12 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930868997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.279 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds