Wall clock time and date at job start Mon Mar 30 2020 01:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46499 * 2 1 4 4 C 1.50699 * 109.47162 * 119.99322 * 2 1 3 5 5 H 1.07994 * 120.00058 * 120.00386 * 4 2 1 6 6 C 1.37885 * 120.00074 * 300.00670 * 4 2 1 7 7 N 1.31511 * 119.99874 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99944 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47252 * 89.99565 * 8 6 4 10 10 H 1.48500 * 109.47115 * 209.99699 * 8 6 4 11 11 H 1.48501 * 109.47026 * 329.99747 * 8 6 4 12 12 N 1.46899 * 109.47407 * 239.99753 * 2 1 3 13 13 C 1.46895 * 111.00085 * 84.99456 * 12 2 1 14 14 C 1.50702 * 109.47077 * 179.97438 * 13 12 2 15 15 C 1.34549 * 126.35783 * 89.71871 * 14 13 12 16 16 N 1.34154 * 107.83702 * 180.26603 * 15 14 13 17 17 C 1.31222 * 108.64708 * 359.97438 * 16 15 14 18 18 C 1.47832 * 125.72357 * 180.02562 * 17 16 15 19 19 C 1.39573 * 120.14193 * 179.69672 * 18 17 16 20 20 C 1.37960 * 119.85582 * 179.74666 * 19 18 17 21 21 C 1.38357 * 120.13814 * 0.55140 * 20 19 18 22 22 C 1.38360 * 120.29582 * 359.70070 * 21 20 19 23 23 C 1.37958 * 120.14280 * 0.02562 * 22 21 20 24 24 O 1.34420 * 108.55012 * 0.02562 * 17 16 15 25 25 H 1.09005 * 109.47487 * 60.00606 * 1 2 3 26 26 H 1.09005 * 109.46989 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47595 * 300.00200 * 1 2 3 28 28 H 0.96998 * 119.99984 * 179.97438 * 7 6 4 29 29 H 1.00896 * 110.99925 * 208.95034 * 12 2 1 30 30 H 1.09005 * 109.47276 * 60.00276 * 13 12 2 31 31 H 1.08995 * 109.47876 * 300.00706 * 13 12 2 32 32 H 1.08004 * 126.08384 * 0.21931 * 15 14 13 33 33 H 1.08005 * 120.07287 * 359.97438 * 19 18 17 34 34 H 1.07995 * 119.92900 * 180.29690 * 20 19 18 35 35 H 1.08000 * 119.85014 * 179.72135 * 21 20 19 36 36 H 1.08000 * 119.92667 * 180.02562 * 22 21 20 37 37 H 1.07998 * 120.07695 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9434 0.8304 2.6034 8 14 2.3212 -1.1199 4.0081 9 1 3.6295 -0.5455 4.4125 10 1 1.3429 -0.9488 5.1121 11 1 2.4858 -2.5658 3.7122 12 7 2.0197 -0.6925 -1.1994 13 6 2.0824 0.2224 -2.3469 14 6 2.5886 -0.5217 -3.5556 15 6 1.8393 -1.1822 -4.4572 16 7 2.6670 -1.7105 -5.3713 17 6 3.9000 -1.3916 -5.0550 18 6 5.1119 -1.7786 -5.8079 19 6 6.3712 -1.3682 -5.3678 20 6 7.4987 -1.7371 -6.0721 21 6 7.3821 -2.5026 -7.2187 22 6 6.1362 -2.9083 -7.6633 23 6 5.0013 -2.5509 -6.9651 24 8 3.8761 -0.6540 -3.9314 25 1 -0.3634 0.5137 -0.8901 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 0.7086 1.1616 3.4843 29 1 2.9174 -1.1204 -1.0286 30 1 2.7588 1.0461 -2.1183 31 1 1.0871 0.6162 -2.5526 32 1 0.7631 -1.2719 -4.4464 33 1 6.4632 -0.7662 -4.4758 34 1 8.4741 -1.4242 -5.7300 35 1 8.2674 -2.7849 -7.7690 36 1 6.0521 -3.5061 -8.5588 37 1 4.0294 -2.8686 -7.3129 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930868997.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:13 Heat of formation + Delta-G solvation = 27.601702 kcal Electronic energy + Delta-G solvation = -19420.029154 eV Core-core repulsion = 16355.949331 eV Total energy + Delta-G solvation = -3064.079823 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -44.36096 -39.96930 -37.94343 -35.87302 -34.90823 -33.32118 -31.93736 -31.62210 -29.31915 -27.40923 -26.13415 -24.53378 -23.62011 -22.58727 -21.95898 -21.77195 -19.04987 -18.54382 -17.80332 -17.21440 -16.95984 -16.46454 -16.15898 -15.80852 -15.43324 -15.26410 -14.62083 -14.54137 -14.37995 -14.07979 -13.88349 -13.59265 -13.20187 -12.83696 -12.76195 -12.48742 -12.41154 -12.36190 -12.21127 -12.08967 -12.02679 -11.64349 -10.96566 -10.68857 -10.59795 -9.96766 -9.31865 -9.15194 -8.16841 -6.31046 -0.39906 0.40287 0.75649 1.40665 1.42157 1.47235 1.52875 1.69830 2.39682 2.83774 2.87549 3.12118 3.56945 3.72030 3.91078 4.00316 4.05367 4.18867 4.23813 4.40453 4.47452 4.56864 4.61783 4.80555 4.88627 4.95419 5.06797 5.07425 5.16110 5.19331 5.41696 5.43172 5.48330 5.51740 5.61579 5.80612 5.94260 6.18849 6.31928 6.57122 6.61714 6.87639 7.39097 8.88647 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.027397 B = 0.003373 C = 0.003111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.773652 B = 8298.930943 C = 8996.738434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.216 3.784 3 H -0.021 1.021 4 C -0.543 4.543 5 H 0.056 0.944 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.962 3.038 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.270 1.270 12 N -0.681 5.681 13 C 0.148 3.852 14 C -0.038 4.038 15 C -0.024 4.024 16 N -0.488 5.488 17 C 0.216 3.784 18 C -0.044 4.044 19 C -0.104 4.104 20 C -0.121 4.121 21 C -0.095 4.095 22 C -0.119 4.119 23 C -0.084 4.084 24 O -0.208 6.208 25 H 0.031 0.969 26 H 0.028 0.972 27 H 0.059 0.941 28 H 0.264 0.736 29 H 0.332 0.668 30 H 0.039 0.961 31 H 0.115 0.885 32 H 0.206 0.794 33 H 0.124 0.876 34 H 0.155 0.845 35 H 0.163 0.837 36 H 0.160 0.840 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.236 -4.524 -19.489 22.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 H -0.003 1.003 4 C -0.581 4.581 5 H 0.074 0.926 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.787 3.213 9 H -0.201 1.201 10 H -0.206 1.206 11 H -0.195 1.195 12 N -0.313 5.313 13 C 0.019 3.981 14 C -0.091 4.091 15 C -0.165 4.165 16 N -0.218 5.218 17 C 0.013 3.987 18 C -0.045 4.045 19 C -0.124 4.124 20 C -0.138 4.138 21 C -0.113 4.113 22 C -0.137 4.137 23 C -0.103 4.103 24 O -0.095 6.095 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.148 0.852 30 H 0.057 0.943 31 H 0.133 0.867 32 H 0.223 0.777 33 H 0.142 0.858 34 H 0.173 0.827 35 H 0.180 0.820 36 H 0.178 0.822 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 10.369 -4.974 -19.998 23.069 hybrid contribution 0.707 0.830 2.071 2.340 sum 11.075 -4.143 -17.928 21.476 Atomic orbital electron populations 1.21573 0.97022 0.99195 0.99654 1.18978 0.93192 0.91050 0.85902 1.00301 1.21549 1.32034 1.12854 0.91680 0.92583 1.25684 0.95060 0.95659 1.01899 1.69999 1.37117 1.23849 1.24358 0.85501 0.78088 0.78966 0.78744 1.20068 1.20611 1.19499 1.60792 1.32372 1.32846 1.05243 1.20370 1.00799 0.91920 0.84988 1.23714 0.80001 1.04977 1.00394 1.23384 1.02070 0.98970 0.92035 1.70594 0.99792 1.23304 1.28063 1.24383 0.94689 0.94045 0.85594 1.17562 0.87238 1.03353 0.96338 1.21412 0.91527 0.99201 1.00249 1.21433 0.98586 0.98265 0.95547 1.21815 0.98764 0.95231 0.95490 1.21482 0.91393 1.00090 1.00701 1.21310 1.00856 0.95535 0.92579 1.84422 1.30395 1.57137 1.37555 0.95000 0.95236 0.92211 0.92654 0.85155 0.94288 0.86722 0.77680 0.85752 0.82706 0.81982 0.82205 0.84937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 9.19 71.98 0.66 -4.96 16 2 C 0.22 10.87 2.60 44.17 0.11 10.98 16 3 H -0.02 -1.12 7.80 -2.39 -0.02 -1.14 16 4 C -0.54 -29.83 8.59 25.60 0.22 -29.61 16 5 H 0.06 3.06 7.62 -2.91 -0.02 3.03 16 6 C 0.02 0.92 5.30 84.66 0.45 1.37 16 7 N -0.91 -51.91 11.32 21.45 0.24 -51.66 16 8 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 9 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 12 N -0.68 -29.15 6.29 -499.47 -3.14 -32.30 16 13 C 0.15 5.30 6.03 85.56 0.52 5.82 16 14 C -0.04 -1.30 6.90 24.84 0.17 -1.13 16 15 C -0.02 -0.78 11.79 83.49 0.98 0.20 16 16 N -0.49 -16.21 10.91 -305.08 -3.33 -19.54 16 17 C 0.22 6.97 7.90 87.33 0.69 7.66 16 18 C -0.04 -1.13 5.87 -20.10 -0.12 -1.25 16 19 C -0.10 -2.28 9.72 22.53 0.22 -2.06 16 20 C -0.12 -1.81 10.03 22.23 0.22 -1.59 16 21 C -0.09 -1.14 10.04 22.33 0.22 -0.91 16 22 C -0.12 -1.68 10.03 22.23 0.22 -1.46 16 23 C -0.08 -1.76 9.69 22.52 0.22 -1.54 16 24 O -0.21 -7.23 10.52 -8.30 -0.09 -7.32 16 25 H 0.03 1.33 7.45 -2.38 -0.02 1.31 16 26 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 27 H 0.06 3.18 6.07 -2.39 -0.01 3.17 16 28 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.33 14.49 8.22 -89.70 -0.74 13.75 16 30 H 0.04 1.41 8.06 -2.38 -0.02 1.39 16 31 H 0.11 3.75 7.44 -2.39 -0.02 3.73 16 32 H 0.21 5.52 8.06 -2.91 -0.02 5.49 16 33 H 0.12 2.78 7.90 -2.91 -0.02 2.75 16 34 H 0.16 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.16 0.81 8.06 -2.91 -0.02 0.79 16 36 H 0.16 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.13 2.83 7.83 -2.91 -0.02 2.81 16 Total: -1.00 -64.45 320.65 0.85 -63.60 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 0.34 Total: 20.37 kcal Atomic # 6 Polarization: -23.28 SS G_CDS: 4.80 Total: -18.48 kcal Atomic # 7 Polarization: -97.28 SS G_CDS: -6.23 Total: -103.50 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.09 Total: -7.32 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -64.45 0.85 -63.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930868997.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.197 kcal (2) G-P(sol) polarization free energy of solvation -64.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds