Wall clock time and date at job start Mon Mar 30 2020 01:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 H 1.09000 * 109.47054 * 139.28535 * 3 2 1 5 5 C 1.52998 * 109.47223 * 19.28798 * 3 2 1 6 6 N 1.46498 * 109.47310 * 259.28658 * 3 2 1 7 7 C 1.34776 * 120.00145 * 205.00417 * 6 3 2 8 8 O 1.21585 * 119.99831 * 359.97438 * 7 6 3 9 9 N 1.34776 * 119.99919 * 180.02562 * 7 6 3 10 10 C 1.39945 * 119.99904 * 175.37869 * 9 7 6 11 11 C 1.38867 * 120.07056 * 214.81228 * 10 9 7 12 12 C 1.38109 * 119.92922 * 179.76982 * 11 10 9 13 13 C 1.38276 * 120.07237 * 0.50188 * 12 11 10 14 14 C 1.50693 * 119.93374 * 179.72519 * 13 12 11 15 15 C 1.50702 * 109.47598 * 270.02438 * 14 13 12 16 16 H 1.08007 * 119.99556 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00796 * 179.97438 * 15 14 13 18 18 N 1.31518 * 119.99524 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00330 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46655 * 90.00304 * 19 17 15 21 21 H 1.48499 * 109.46891 * 210.00116 * 19 17 15 22 22 H 1.48493 * 109.46863 * 330.00153 * 19 17 15 23 23 C 1.38286 * 120.13727 * 359.74731 * 13 12 11 24 24 C 1.38110 * 120.07061 * 0.02562 * 23 13 12 25 25 H 4.18748 * 15.03754 * 0.02562 * 4 2 1 26 26 H 1.09000 * 109.47555 * 300.00192 * 5 3 2 27 27 H 1.08999 * 109.47053 * 59.99665 * 5 3 2 28 28 H 1.09002 * 109.47321 * 179.97438 * 5 3 2 29 29 H 0.97001 * 119.99531 * 25.00508 * 6 3 2 30 30 H 0.96996 * 120.00038 * 355.37643 * 9 7 6 31 31 H 1.08000 * 120.03111 * 359.97438 * 11 10 9 32 32 H 1.08005 * 119.96445 * 180.25305 * 12 11 10 33 33 H 1.08997 * 109.47162 * 30.02255 * 14 13 12 34 34 H 1.08997 * 109.47605 * 150.02281 * 14 13 12 35 35 H 0.97003 * 119.99902 * 179.97438 * 18 17 15 36 36 H 1.08003 * 119.96314 * 180.02562 * 23 13 12 37 37 H 1.08002 * 120.03468 * 179.97438 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0090 0.7798 -0.6703 5 6 3.1566 -1.3606 -0.4765 6 7 3.1343 0.2576 1.3571 7 6 4.3560 0.7955 1.5432 8 8 5.0530 1.0670 0.5847 9 7 4.8053 1.0314 2.7918 10 6 6.1095 1.4990 2.9893 11 6 6.8325 1.0939 4.1036 12 6 8.1210 1.5534 4.2932 13 6 8.6876 2.4241 3.3805 14 6 10.0915 2.9283 3.5938 15 6 10.0515 4.1994 4.4023 16 1 9.1040 4.6017 4.7294 17 6 11.2242 4.8484 4.7254 18 7 12.3780 4.3583 4.3275 19 14 11.1744 6.4244 5.7270 20 1 11.2497 6.0944 7.1729 21 1 12.3266 7.2840 5.3548 22 1 9.9073 7.1473 5.4495 23 6 7.9683 2.8333 2.2726 24 6 6.6810 2.3738 2.0748 25 1 -1.0501 -0.0004 0.0010 26 1 2.7937 -2.1398 0.1938 27 1 2.7933 -1.5518 -1.4862 28 1 4.2466 -1.3600 -0.4769 29 1 2.5782 0.0406 2.1217 30 1 4.2248 0.8771 3.5533 31 1 6.3888 0.4177 4.8193 32 1 8.6854 1.2356 5.1575 33 1 10.6706 2.1756 4.1287 34 1 10.5571 3.1264 2.6283 35 1 13.2031 4.8151 4.5544 36 1 8.4137 3.5131 1.5613 37 1 6.1196 2.6941 1.2095 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932570948.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:48 Heat of formation + Delta-G solvation = 25.426213 kcal Electronic energy + Delta-G solvation = -19272.087454 eV Core-core repulsion = 16207.913295 eV Total energy + Delta-G solvation = -3064.174159 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.72215 -39.87036 -37.41602 -36.14287 -35.00650 -33.64907 -32.17462 -31.73034 -30.82501 -28.30080 -25.55835 -24.62179 -23.77342 -22.36761 -21.62993 -20.14748 -19.20544 -18.48946 -18.14353 -17.01768 -16.65814 -16.52678 -16.04419 -15.88667 -15.44283 -14.96419 -14.57676 -14.52295 -14.35563 -14.22031 -13.63938 -13.27775 -13.21824 -13.07860 -12.64290 -12.59921 -12.46209 -12.05614 -11.78363 -11.61258 -11.51171 -11.39050 -11.20066 -10.87051 -10.58588 -10.27076 -9.72956 -8.83230 -8.16549 -6.31316 0.50459 0.60972 1.19852 1.40734 1.42279 1.53754 1.82286 2.00791 2.13137 2.41631 3.03664 3.12448 3.19808 3.31033 4.07866 4.18557 4.19792 4.24590 4.41646 4.60779 4.63066 4.69284 4.74834 4.84488 5.01739 5.15861 5.21361 5.32421 5.35403 5.36205 5.45065 5.52100 5.65063 5.77922 5.93947 6.11725 6.15272 6.28775 6.58899 6.81496 6.94699 7.36999 7.44092 8.91345 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.044103 B = 0.002978 C = 0.002945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.722776 B = 9398.888107 C = 9505.356302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.242 4.242 3 C 0.272 3.728 4 H 0.090 0.910 5 C -0.153 4.153 6 N -0.721 5.721 7 C 0.702 3.298 8 O -0.611 6.611 9 N -0.666 5.666 10 C 0.136 3.864 11 C -0.127 4.127 12 C -0.113 4.113 13 C -0.075 4.075 14 C 0.057 3.943 15 C -0.526 4.526 16 H 0.056 0.944 17 C 0.002 3.998 18 N -0.932 5.932 19 Si 0.967 3.033 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.267 1.267 23 C -0.121 4.121 24 C -0.123 4.123 25 H 0.254 0.746 26 H 0.071 0.929 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.414 0.586 30 H 0.424 0.576 31 H 0.160 0.840 32 H 0.127 0.873 33 H 0.007 0.993 34 H -0.002 1.002 35 H 0.265 0.735 36 H 0.108 0.892 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.481 -11.427 -3.726 28.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.242 4.242 3 C 0.167 3.833 4 H 0.108 0.892 5 C -0.211 4.211 6 N -0.378 5.378 7 C 0.403 3.597 8 O -0.491 6.491 9 N -0.315 5.315 10 C 0.042 3.958 11 C -0.147 4.147 12 C -0.132 4.132 13 C -0.076 4.076 14 C 0.020 3.980 15 C -0.564 4.564 16 H 0.074 0.926 17 C -0.196 4.196 18 N -0.572 5.572 19 Si 0.791 3.209 20 H -0.194 1.194 21 H -0.206 1.206 22 H -0.191 1.191 23 C -0.140 4.140 24 C -0.144 4.144 25 H 0.271 0.729 26 H 0.090 0.910 27 H 0.100 0.900 28 H 0.071 0.929 29 H 0.251 0.749 30 H 0.263 0.737 31 H 0.177 0.823 32 H 0.145 0.855 33 H 0.025 0.975 34 H 0.017 0.983 35 H 0.074 0.926 36 H 0.126 0.874 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -24.726 -11.198 -4.615 27.533 hybrid contribution 0.115 0.785 0.880 1.185 sum -24.611 -10.413 -3.735 26.983 Atomic orbital electron populations 1.25834 0.96559 0.98420 0.95328 1.22899 0.94100 1.02741 1.04501 1.17436 0.83676 0.99019 0.83129 0.89218 1.22100 1.01211 0.95176 1.02611 1.44987 1.16118 1.67120 1.09537 1.16013 0.82176 0.78229 0.83277 1.90938 1.57825 1.59214 1.41084 1.42203 1.12925 1.68679 1.07681 1.17341 0.85097 0.96528 0.96883 1.21005 0.93489 1.01637 0.98544 1.20962 0.95470 0.97751 0.99008 1.20396 0.97382 0.95580 0.94251 1.18087 0.89031 0.95274 0.95606 1.21391 0.92790 1.08597 1.33618 0.92622 1.25959 0.94975 1.01394 0.97278 1.70093 0.98220 1.41540 1.47313 0.85417 0.77872 0.78689 0.78909 1.19407 1.20639 1.19103 1.20924 0.94710 1.00486 0.97880 1.21144 0.95551 0.97349 1.00328 0.72937 0.90984 0.89983 0.92884 0.74913 0.73721 0.82271 0.85515 0.97475 0.98340 0.92610 0.87361 0.85525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 19.25 74.32 1.43 0.03 16 2 C -0.24 -3.46 12.75 31.13 0.40 -3.07 16 3 C 0.27 4.76 3.02 43.19 0.13 4.89 16 4 H 0.09 1.94 7.58 -2.39 -0.02 1.93 16 5 C -0.15 -2.42 9.44 71.98 0.68 -1.74 16 6 N -0.72 -12.33 5.06 -466.57 -2.36 -14.69 16 7 C 0.70 17.78 8.37 179.05 1.50 19.28 16 8 O -0.61 -21.19 13.44 -3.98 -0.05 -21.25 16 9 N -0.67 -15.08 5.34 -317.18 -1.70 -16.78 16 10 C 0.14 4.27 6.30 38.15 0.24 4.51 16 11 C -0.13 -3.80 9.97 22.39 0.22 -3.58 16 12 C -0.11 -4.34 9.69 22.25 0.22 -4.13 16 13 C -0.08 -3.47 5.07 -19.85 -0.10 -3.57 16 14 C 0.06 3.15 5.10 29.10 0.15 3.30 16 15 C -0.53 -30.64 9.09 25.60 0.23 -30.41 16 16 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 17 C 0.00 0.10 5.46 84.65 0.46 0.57 16 18 N -0.93 -57.15 13.29 21.45 0.28 -56.86 16 19 Si 0.97 44.89 29.54 68.60 2.03 46.91 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 C -0.12 -5.26 9.69 22.25 0.22 -5.04 16 24 C -0.12 -4.69 8.70 22.39 0.19 -4.50 16 25 H 0.25 0.37 7.80 -4.41 -0.03 0.33 16 26 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.41 4.36 8.60 -92.71 -0.80 3.57 16 30 H 0.42 5.82 8.84 -92.71 -0.82 5.00 16 31 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 33 H 0.01 0.40 8.08 -2.39 -0.02 0.38 16 34 H 0.00 -0.10 8.08 -2.39 -0.02 -0.12 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 37 H 0.13 4.90 6.22 -2.91 -0.02 4.88 16 Total: -1.00 -74.95 329.74 3.64 -71.31 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -0.53 Total: 14.82 kcal Atomic # 6 Polarization: -29.43 SS G_CDS: 5.97 Total: -23.46 kcal Atomic # 7 Polarization: -84.56 SS G_CDS: -3.77 Total: -88.33 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.05 Total: -21.25 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -74.95 3.64 -71.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932570948.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.733 kcal (2) G-P(sol) polarization free energy of solvation -74.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds