Wall clock time and date at job start Mon Mar 30 2020 01:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39595 * 120.06998 * 51.54323 * 3 2 1 5 5 C 1.37826 * 119.92831 * 179.76740 * 4 3 2 6 6 C 1.39003 * 120.06585 * 0.48542 * 5 4 3 7 7 N 1.39822 * 119.92271 * 179.76788 * 6 5 4 8 8 C 1.34774 * 120.00061 * 324.88993 * 7 6 5 9 9 O 1.21581 * 120.00262 * 4.56451 * 8 7 6 10 10 N 1.34775 * 119.99734 * 184.56409 * 8 7 6 11 11 C 1.46504 * 120.00353 * 0.02562 * 10 8 7 12 12 C 1.46503 * 120.00163 * 179.97438 * 10 8 7 13 13 H 1.09006 * 109.46775 * 0.02562 * 12 10 8 14 14 C 1.53007 * 109.47408 * 240.00445 * 12 10 8 15 15 C 1.50694 * 109.47515 * 119.99688 * 12 10 8 16 16 H 1.08004 * 119.99414 * 0.02562 * 15 12 10 17 17 C 1.37872 * 120.00305 * 179.97438 * 15 12 10 18 18 N 1.31513 * 120.00103 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00245 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47222 * 90.00036 * 19 17 15 21 21 H 1.48498 * 109.47411 * 210.00485 * 19 17 15 22 22 H 1.48507 * 109.47081 * 330.00428 * 19 17 15 23 23 C 1.38996 * 120.14653 * 359.78827 * 6 5 4 24 24 C 1.37816 * 120.07088 * 359.95431 * 23 6 5 25 25 H 4.51990 * 14.04114 * 359.97438 * 4 2 1 26 26 H 1.07997 * 120.04205 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.96372 * 180.23251 * 5 4 3 28 28 H 0.97007 * 119.99826 * 144.88864 * 7 6 5 29 29 H 1.08999 * 109.47061 * 89.99688 * 11 10 8 30 30 H 1.08999 * 109.46819 * 210.00246 * 11 10 8 31 31 H 1.08999 * 109.46373 * 329.99302 * 11 10 8 32 32 H 1.09005 * 109.46932 * 59.99694 * 14 12 10 33 33 H 1.08994 * 109.46736 * 179.97438 * 14 12 10 34 34 H 1.08999 * 109.46281 * 299.99766 * 14 12 10 35 35 H 0.96999 * 120.00292 * 179.97438 * 18 17 15 36 36 H 1.07997 * 119.96615 * 179.97438 * 23 6 5 37 37 H 1.08004 * 120.03143 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3058 -0.7504 -0.9460 5 6 4.6841 -0.7438 -0.9464 6 6 5.3772 0.0015 0.0003 7 7 6.7754 0.0021 0.0002 8 6 7.4497 -1.1156 -0.3349 9 8 6.8452 -2.0988 -0.7170 10 7 8.7943 -1.1434 -0.2465 11 6 9.5228 0.0412 0.2144 12 6 9.5274 -2.3585 -0.6103 13 1 8.8222 -3.1274 -0.9261 14 6 10.3192 -2.8581 0.5999 15 6 10.4764 -2.0534 -1.7404 16 1 10.5285 -1.0541 -2.1468 17 6 11.2788 -3.0496 -2.2549 18 7 11.2156 -4.2663 -1.7598 19 14 12.4556 -2.6712 -3.6554 20 1 13.7654 -2.2456 -3.0999 21 1 12.6422 -3.8869 -4.4874 22 1 11.8948 -1.5799 -4.4921 23 6 4.6834 0.7459 0.9472 24 6 3.3052 0.7478 0.9496 25 1 -1.0500 -0.0008 -0.0002 26 1 2.7679 -1.3326 -1.6795 27 1 5.2260 -1.3217 -1.6803 28 1 7.2601 0.8071 0.2414 29 1 9.6328 0.0012 1.2981 30 1 10.5085 0.0651 -0.2503 31 1 8.9690 0.9385 -0.0619 32 1 9.6327 -3.0789 1.4173 33 1 10.8642 -3.7624 0.3292 34 1 11.0243 -2.0890 0.9152 35 1 11.7798 -4.9673 -2.1220 36 1 5.2248 1.3236 1.6816 37 1 2.7667 1.3261 1.6859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000934932399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:16 Heat of formation + Delta-G solvation = 62.065094 kcal Electronic energy + Delta-G solvation = -19954.669174 eV Core-core repulsion = 16892.083796 eV Total energy + Delta-G solvation = -3062.585378 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.34149 -38.63335 -35.74237 -34.74194 -33.24601 -32.52206 -30.92895 -29.74400 -28.45831 -26.21664 -25.24947 -23.43551 -22.73463 -21.19831 -19.21564 -18.93694 -17.94240 -17.00658 -16.25687 -15.75138 -15.28224 -15.18320 -14.54359 -14.20845 -13.90562 -13.41836 -13.30485 -13.08964 -12.67928 -12.56901 -12.25769 -11.67365 -11.62540 -11.53534 -11.21172 -11.09650 -10.85985 -10.71325 -10.49547 -10.30154 -10.19754 -9.78939 -9.40915 -9.16769 -8.87198 -8.46340 -7.92104 -7.54907 -6.10276 -4.18577 0.98266 1.47559 2.69725 2.94902 3.14030 3.24381 3.32105 3.35163 3.73589 4.10793 4.24524 4.32293 4.48383 4.95138 4.99730 5.21074 5.39243 5.48909 5.55956 5.68976 5.74296 5.91106 6.04984 6.22513 6.36416 6.42599 6.55842 6.66035 6.69938 6.78257 6.98554 7.12116 7.17974 7.41831 7.48306 7.64568 7.77440 8.02795 8.17327 8.56583 8.81890 9.13581 9.48359 10.95015 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033764 B = 0.003736 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.085943 B = 7493.258253 C = 7780.634799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.031 4.031 4 C -0.072 4.072 5 C -0.122 4.122 6 C 0.194 3.806 7 N -0.696 5.696 8 C 0.696 3.304 9 O -0.577 6.577 10 N -0.602 5.602 11 C 0.083 3.917 12 C 0.272 3.728 13 H 0.066 0.934 14 C -0.147 4.147 15 C -0.528 4.528 16 H 0.059 0.941 17 C 0.065 3.935 18 N -0.887 5.887 19 Si 0.899 3.101 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.274 1.274 23 C -0.157 4.157 24 C -0.074 4.074 25 H 0.221 0.779 26 H 0.127 0.873 27 H 0.151 0.849 28 H 0.404 0.596 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.046 0.954 32 H 0.011 0.989 33 H 0.094 0.906 34 H 0.029 0.971 35 H 0.264 0.736 36 H 0.128 0.872 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.859 11.325 5.509 17.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.131 4.131 3 C -0.032 4.032 4 C -0.091 4.091 5 C -0.143 4.143 6 C 0.097 3.903 7 N -0.344 5.344 8 C 0.398 3.602 9 O -0.454 6.454 10 N -0.336 5.336 11 C -0.061 4.061 12 C 0.172 3.828 13 H 0.083 0.917 14 C -0.205 4.205 15 C -0.567 4.567 16 H 0.078 0.922 17 C -0.137 4.137 18 N -0.525 5.525 19 Si 0.727 3.273 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.178 4.178 24 C -0.093 4.093 25 H 0.238 0.762 26 H 0.145 0.855 27 H 0.168 0.832 28 H 0.241 0.759 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.065 0.935 32 H 0.030 0.970 33 H 0.113 0.887 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.146 0.854 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.029 10.353 5.204 16.702 hybrid contribution 0.852 0.644 -0.533 1.194 sum -11.177 10.998 4.671 16.361 Atomic orbital electron populations 1.24775 0.95693 1.00868 1.00568 1.20130 0.92029 1.00409 1.00500 1.15906 0.86406 1.01791 0.99110 1.21101 0.93584 0.97050 0.97360 1.21417 0.93495 1.00409 0.98941 1.17730 0.82357 0.96748 0.93506 1.43015 1.04266 1.14456 1.72707 1.16001 0.82662 0.82463 0.79109 1.90868 1.67218 1.34354 1.52994 1.47635 1.02831 1.16219 1.66956 1.21563 0.99056 0.86726 0.98731 1.18919 0.90700 0.80699 0.92490 0.91662 1.22106 0.99177 1.02885 0.96381 1.21320 1.21618 0.96470 1.17250 0.92237 1.24884 0.97045 0.94859 0.96945 1.69877 1.39611 1.01281 1.41707 0.86482 0.80918 0.77915 0.81994 1.20618 1.21073 1.19936 1.20762 0.93997 1.04152 0.98936 1.20848 0.93137 0.97882 0.97408 0.76212 0.85520 0.83191 0.75905 0.93725 0.89547 0.93523 0.96963 0.88708 0.95158 0.92617 0.85416 0.85626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.04 19.25 29.55 0.57 -1.47 16 2 C -0.13 -1.64 13.23 -38.84 -0.51 -2.15 16 3 C -0.03 -0.42 5.73 -106.96 -0.61 -1.03 16 4 C -0.07 -1.03 9.74 -39.23 -0.38 -1.41 16 5 C -0.12 -1.99 8.67 -39.45 -0.34 -2.33 16 6 C 0.19 2.95 6.30 -83.65 -0.53 2.42 16 7 N -0.70 -10.94 5.21 -14.19 -0.07 -11.02 16 8 C 0.70 14.38 8.12 -86.92 -0.71 13.68 16 9 O -0.58 -14.07 13.09 5.29 0.07 -14.01 16 10 N -0.60 -12.55 2.75 -181.00 -0.50 -13.04 16 11 C 0.08 1.32 9.24 59.85 0.55 1.87 16 12 C 0.27 6.83 2.64 -69.08 -0.18 6.65 16 13 H 0.07 1.91 6.90 -51.93 -0.36 1.55 16 14 C -0.15 -3.47 8.97 37.16 0.33 -3.13 16 15 C -0.53 -13.97 7.99 -34.45 -0.28 -14.24 16 16 H 0.06 1.54 7.34 -52.48 -0.38 1.16 16 17 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 18 N -0.89 -24.78 11.32 55.43 0.63 -24.15 16 19 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 C -0.16 -1.93 9.95 -39.45 -0.39 -2.33 16 24 C -0.07 -0.89 9.74 -39.23 -0.38 -1.27 16 25 H 0.22 1.30 7.80 -54.09 -0.42 0.88 16 26 H 0.13 1.61 8.06 -52.49 -0.42 1.18 16 27 H 0.15 2.81 6.21 -52.49 -0.33 2.48 16 28 H 0.40 4.99 6.52 -40.82 -0.27 4.72 16 29 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.09 1.46 7.02 -51.93 -0.36 1.10 16 31 H 0.05 0.57 6.30 -51.93 -0.33 0.25 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 34 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 35 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 36 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 37 H 0.13 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 318.68 15.07 4.80 4.80 Total: -1.00 -31.34 318.68 -7.46 -38.79 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -4.41 Total: 6.01 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: -2.96 Total: -3.09 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.06 Total: -48.21 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: 0.07 Total: -14.01 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.34 -7.46 -38.79 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934932399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.860 kcal (2) G-P(sol) polarization free energy of solvation -31.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds