Wall clock time and date at job start Mon Mar 30 2020 01:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39595 * 120.06998 * 51.54323 * 3 2 1 5 5 C 1.37826 * 119.92831 * 179.76740 * 4 3 2 6 6 C 1.39003 * 120.06585 * 0.48542 * 5 4 3 7 7 N 1.39822 * 119.92271 * 179.76788 * 6 5 4 8 8 C 1.34774 * 120.00061 * 324.88993 * 7 6 5 9 9 O 1.21581 * 120.00262 * 4.56451 * 8 7 6 10 10 N 1.34775 * 119.99734 * 184.56409 * 8 7 6 11 11 C 1.46504 * 120.00353 * 0.02562 * 10 8 7 12 12 C 1.46503 * 120.00163 * 179.97438 * 10 8 7 13 13 H 1.09006 * 109.46775 * 0.02562 * 12 10 8 14 14 C 1.53007 * 109.47408 * 240.00445 * 12 10 8 15 15 C 1.50694 * 109.47515 * 119.99688 * 12 10 8 16 16 H 1.08004 * 119.99414 * 0.02562 * 15 12 10 17 17 C 1.37872 * 120.00305 * 179.97438 * 15 12 10 18 18 N 1.31513 * 120.00103 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00245 * 180.02562 * 17 15 12 20 20 H 1.48497 * 109.47222 * 90.00036 * 19 17 15 21 21 H 1.48498 * 109.47411 * 210.00485 * 19 17 15 22 22 H 1.48507 * 109.47081 * 330.00428 * 19 17 15 23 23 C 1.38996 * 120.14653 * 359.78827 * 6 5 4 24 24 C 1.37816 * 120.07088 * 359.95431 * 23 6 5 25 25 H 4.51990 * 14.04114 * 359.97438 * 4 2 1 26 26 H 1.07997 * 120.04205 * 0.02562 * 4 3 2 27 27 H 1.07996 * 119.96372 * 180.23251 * 5 4 3 28 28 H 0.97007 * 119.99826 * 144.88864 * 7 6 5 29 29 H 1.08999 * 109.47061 * 89.99688 * 11 10 8 30 30 H 1.08999 * 109.46819 * 210.00246 * 11 10 8 31 31 H 1.08999 * 109.46373 * 329.99302 * 11 10 8 32 32 H 1.09005 * 109.46932 * 59.99694 * 14 12 10 33 33 H 1.08994 * 109.46736 * 179.97438 * 14 12 10 34 34 H 1.08999 * 109.46281 * 299.99766 * 14 12 10 35 35 H 0.96999 * 120.00292 * 179.97438 * 18 17 15 36 36 H 1.07997 * 119.96615 * 179.97438 * 23 6 5 37 37 H 1.08004 * 120.03143 * 179.97438 * 24 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3058 -0.7504 -0.9460 5 6 4.6841 -0.7438 -0.9464 6 6 5.3772 0.0015 0.0003 7 7 6.7754 0.0021 0.0002 8 6 7.4497 -1.1156 -0.3349 9 8 6.8452 -2.0988 -0.7170 10 7 8.7943 -1.1434 -0.2465 11 6 9.5228 0.0412 0.2144 12 6 9.5274 -2.3585 -0.6103 13 1 8.8222 -3.1274 -0.9261 14 6 10.3192 -2.8581 0.5999 15 6 10.4764 -2.0534 -1.7404 16 1 10.5285 -1.0541 -2.1468 17 6 11.2788 -3.0496 -2.2549 18 7 11.2156 -4.2663 -1.7598 19 14 12.4556 -2.6712 -3.6554 20 1 13.7654 -2.2456 -3.0999 21 1 12.6422 -3.8869 -4.4874 22 1 11.8948 -1.5799 -4.4921 23 6 4.6834 0.7459 0.9472 24 6 3.3052 0.7478 0.9496 25 1 -1.0500 -0.0008 -0.0002 26 1 2.7679 -1.3326 -1.6795 27 1 5.2260 -1.3217 -1.6803 28 1 7.2601 0.8071 0.2414 29 1 9.6328 0.0012 1.2981 30 1 10.5085 0.0651 -0.2503 31 1 8.9690 0.9385 -0.0619 32 1 9.6327 -3.0789 1.4173 33 1 10.8642 -3.7624 0.3292 34 1 11.0243 -2.0890 0.9152 35 1 11.7798 -4.9673 -2.1220 36 1 5.2248 1.3236 1.6816 37 1 2.7667 1.3261 1.6859 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934932399.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:16 Heat of formation + Delta-G solvation = 43.666731 kcal Electronic energy + Delta-G solvation = -19955.466987 eV Core-core repulsion = 16892.083796 eV Total energy + Delta-G solvation = -3063.383191 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.73811 -39.88631 -37.36714 -36.15615 -34.85976 -33.82659 -31.98796 -31.42149 -29.72362 -27.63717 -27.29533 -24.71829 -23.81918 -22.79462 -20.77901 -19.86229 -19.35928 -18.59723 -18.02030 -17.05425 -16.72231 -16.51053 -16.13513 -15.66905 -15.03057 -14.89687 -14.57648 -14.37791 -14.23816 -13.94299 -13.56361 -13.35824 -13.05649 -12.85150 -12.74526 -12.68313 -12.58556 -12.25059 -12.17578 -12.12184 -11.41470 -11.22063 -11.10932 -10.83735 -10.51717 -9.95573 -9.44451 -8.84561 -8.14023 -6.30701 -0.06836 0.42205 1.41861 1.43649 1.53030 1.69491 1.84119 1.92740 2.29478 2.43193 3.04050 3.07137 3.14112 3.43753 3.94127 4.01679 4.31132 4.37519 4.49795 4.61328 4.69585 4.72684 4.80984 4.90465 4.97550 5.06280 5.06458 5.28487 5.40504 5.45342 5.49613 5.51564 5.56041 5.66541 5.96793 6.02351 6.15484 6.23849 6.64327 6.76944 7.05746 7.36429 7.60255 8.90220 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033764 B = 0.003736 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 829.085943 B = 7493.258253 C = 7780.634799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.191 4.191 3 C -0.029 4.029 4 C -0.085 4.085 5 C -0.145 4.145 6 C 0.165 3.835 7 N -0.674 5.674 8 C 0.690 3.310 9 O -0.626 6.626 10 N -0.610 5.610 11 C 0.078 3.922 12 C 0.278 3.722 13 H 0.010 0.990 14 C -0.132 4.132 15 C -0.538 4.538 16 H 0.062 0.938 17 C 0.015 3.985 18 N -0.918 5.918 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.271 1.271 23 C -0.138 4.138 24 C -0.071 4.071 25 H 0.261 0.739 26 H 0.130 0.870 27 H 0.113 0.887 28 H 0.422 0.578 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.018 0.982 33 H 0.068 0.932 34 H 0.048 0.952 35 H 0.265 0.735 36 H 0.164 0.836 37 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.933 14.189 6.788 20.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.191 4.191 3 C -0.030 4.030 4 C -0.104 4.104 5 C -0.165 4.165 6 C 0.070 3.930 7 N -0.325 5.325 8 C 0.392 3.608 9 O -0.507 6.507 10 N -0.344 5.344 11 C -0.064 4.064 12 C 0.176 3.824 13 H 0.028 0.972 14 C -0.190 4.190 15 C -0.577 4.577 16 H 0.080 0.920 17 C -0.184 4.184 18 N -0.556 5.556 19 Si 0.791 3.209 20 H -0.192 1.192 21 H -0.213 1.213 22 H -0.196 1.196 23 C -0.158 4.158 24 C -0.090 4.090 25 H 0.277 0.723 26 H 0.148 0.852 27 H 0.131 0.869 28 H 0.262 0.738 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.037 0.963 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.182 0.818 37 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.111 13.296 6.512 19.776 hybrid contribution 0.949 -0.220 -0.905 1.330 sum -12.162 13.076 5.607 18.718 Atomic orbital electron populations 1.25749 0.96434 0.97665 0.97497 1.20337 0.92466 1.03129 1.03215 1.16131 0.87501 1.00835 0.98496 1.21142 0.92866 0.97980 0.98390 1.21217 0.94423 1.01432 0.99466 1.17939 0.81921 0.98378 0.94797 1.42609 1.04521 1.13494 1.71866 1.16190 0.82627 0.83115 0.78903 1.90841 1.68231 1.36633 1.54971 1.47481 1.03146 1.16542 1.67252 1.21836 0.98527 0.86001 1.00037 1.18473 0.89535 0.81443 0.92975 0.97211 1.21885 0.99109 1.02176 0.95880 1.21585 1.21699 0.96615 1.17803 0.91963 1.25725 0.98738 0.94646 0.99325 1.70023 1.40458 1.02163 1.43004 0.85445 0.79150 0.77490 0.78842 1.19163 1.21295 1.19612 1.21070 0.94202 1.02589 0.97963 1.21255 0.93106 0.97298 0.97315 0.72307 0.85217 0.86888 0.73770 0.91332 0.90592 0.89741 0.96281 0.91296 0.93252 0.92625 0.81837 0.82404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 19.25 74.32 1.43 -1.19 16 2 C -0.19 -4.41 13.23 30.02 0.40 -4.01 16 3 C -0.03 -0.74 5.73 -21.38 -0.12 -0.86 16 4 C -0.09 -2.53 9.74 22.50 0.22 -2.31 16 5 C -0.14 -5.00 8.67 22.36 0.19 -4.81 16 6 C 0.17 5.00 6.30 38.23 0.24 5.24 16 7 N -0.67 -20.85 5.21 -317.08 -1.65 -22.50 16 8 C 0.69 29.37 8.12 179.06 1.45 30.82 16 9 O -0.63 -32.71 13.09 -3.97 -0.05 -32.76 16 10 N -0.61 -25.71 2.75 -844.83 -2.33 -28.03 16 11 C 0.08 2.33 9.24 127.77 1.18 3.51 16 12 C 0.28 14.49 2.64 44.25 0.12 14.61 16 13 H 0.01 0.62 6.90 -2.38 -0.02 0.61 16 14 C -0.13 -6.35 8.97 71.98 0.65 -5.70 16 15 C -0.54 -29.08 7.99 25.60 0.20 -28.87 16 16 H 0.06 3.25 7.34 -2.91 -0.02 3.22 16 17 C 0.02 0.83 5.30 84.65 0.45 1.28 16 18 N -0.92 -52.91 11.32 21.45 0.24 -52.67 16 19 Si 0.97 42.88 29.54 68.60 2.03 44.90 16 20 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 21 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 23 C -0.14 -3.03 9.95 22.35 0.22 -2.81 16 24 C -0.07 -1.52 9.74 22.50 0.22 -1.30 16 25 H 0.26 1.77 7.80 -4.42 -0.03 1.74 16 26 H 0.13 3.54 8.06 -2.91 -0.02 3.52 16 27 H 0.11 4.71 6.21 -2.91 -0.02 4.70 16 28 H 0.42 9.43 6.52 -92.70 -0.60 8.82 16 29 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.08 2.44 7.02 -2.39 -0.02 2.43 16 31 H 0.08 1.83 6.30 -2.39 -0.02 1.82 16 32 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 34 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 35 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 36 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -73.15 318.68 5.57 -67.57 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.48 Total: 19.90 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 6.85 Total: 3.58 kcal Atomic # 7 Polarization: -99.46 SS G_CDS: -3.73 Total: -103.20 kcal Atomic # 8 Polarization: -32.71 SS G_CDS: -0.05 Total: -32.76 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -73.15 5.57 -67.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934932399.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.241 kcal (2) G-P(sol) polarization free energy of solvation -73.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.574 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds