Wall clock time and date at job start Mon Mar 30 2020 01:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39606 * 120.06924 * 187.41650 * 3 2 1 5 5 C 1.37816 * 119.92749 * 179.73929 * 4 3 2 6 6 C 1.39003 * 120.06827 * 0.51174 * 5 4 3 7 7 N 1.39822 * 119.92311 * 179.74389 * 6 5 4 8 8 C 1.34774 * 120.00000 * 324.88528 * 7 6 5 9 9 O 1.21581 * 120.00262 * 4.57395 * 8 7 6 10 10 N 1.34785 * 119.99715 * 184.56829 * 8 7 6 11 11 C 1.46499 * 120.00037 * 0.02562 * 10 8 7 12 12 C 1.52993 * 109.47346 * 89.99708 * 11 10 8 13 13 C 1.46498 * 119.99804 * 179.97438 * 10 8 7 14 14 C 1.50701 * 109.46910 * 90.00468 * 13 10 8 15 15 H 1.08002 * 119.99922 * 359.97438 * 14 13 10 16 16 C 1.37877 * 120.00430 * 180.02562 * 14 13 10 17 17 N 1.31519 * 119.99382 * 359.97438 * 16 14 13 18 18 Si 1.86792 * 120.00211 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47359 * 89.99931 * 18 16 14 20 20 H 1.48503 * 109.46937 * 209.99617 * 18 16 14 21 21 H 1.48493 * 109.47378 * 329.99614 * 18 16 14 22 22 C 1.38996 * 120.14657 * 359.76434 * 6 5 4 23 23 C 1.37816 * 120.07191 * 359.97438 * 22 6 5 24 24 H 4.52000 * 14.04037 * 359.97438 * 4 2 1 25 25 H 1.07999 * 120.03300 * 359.97438 * 4 3 2 26 26 H 1.07994 * 119.96621 * 180.25286 * 5 4 3 27 27 H 0.97007 * 119.99887 * 144.89342 * 7 6 5 28 28 H 1.08999 * 109.46515 * 209.99656 * 11 10 8 29 29 H 1.09001 * 109.47105 * 329.99313 * 11 10 8 30 30 H 1.09001 * 109.47341 * 59.99750 * 12 11 10 31 31 H 1.09001 * 109.47454 * 179.97438 * 12 11 10 32 32 H 1.08999 * 109.47271 * 299.99485 * 12 11 10 33 33 H 1.08991 * 109.47338 * 210.00302 * 13 10 8 34 34 H 1.09005 * 109.47263 * 330.01202 * 13 10 8 35 35 H 0.97002 * 119.99607 * 180.02562 * 17 16 14 36 36 H 1.08004 * 119.96663 * 179.97438 * 22 6 5 37 37 H 1.08003 * 120.03743 * 179.97438 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3050 1.1990 0.1560 5 6 4.6831 1.1956 0.1609 6 6 5.3772 0.0020 0.0002 7 7 6.7754 0.0027 0.0003 8 6 7.4488 1.0389 -0.5376 9 8 6.8433 2.0102 -0.9476 10 7 8.7934 0.9983 -0.6208 11 6 9.5229 -0.1723 -0.1271 12 6 9.6778 -1.1911 -1.2579 13 6 9.5254 2.1244 -1.2060 14 6 9.8740 3.1136 -0.1238 15 1 9.5794 2.9227 0.8976 16 6 10.5681 4.2628 -0.4378 17 7 10.9264 4.4954 -1.6817 18 14 11.0008 5.4885 0.9037 19 1 12.3248 5.1436 1.4812 20 1 11.0536 6.8558 0.3265 21 1 9.9682 5.4408 1.9697 22 6 4.6843 -1.1921 -0.1611 23 6 3.3061 -1.1962 -0.1616 24 1 -1.0500 -0.0010 -0.0006 25 1 2.7662 2.1273 0.2764 26 1 5.2244 2.1217 0.2856 27 1 7.2608 -0.7427 0.3875 28 1 10.5085 0.1349 0.2228 29 1 8.9698 -0.6245 0.6962 30 1 10.2309 -0.7389 -2.0811 31 1 10.2209 -2.0618 -0.8907 32 1 8.6922 -1.4982 -1.6078 33 1 10.4400 1.7597 -1.6732 34 1 8.9030 2.6115 -1.9567 35 1 11.4151 5.3037 -1.9025 36 1 5.2265 -2.1178 -0.2861 37 1 2.7683 -2.1244 -0.2873 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000934935104.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:44:59 Heat of formation + Delta-G solvation = 37.518586 kcal Electronic energy + Delta-G solvation = -19936.442850 eV Core-core repulsion = 16872.793055 eV Total energy + Delta-G solvation = -3063.649795 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.74923 -39.86879 -37.15238 -36.21346 -34.87961 -33.83361 -31.99771 -31.63311 -30.38187 -28.69116 -25.38217 -24.48065 -23.84572 -23.49280 -20.84772 -19.85842 -19.38850 -18.59368 -18.28984 -16.95119 -16.70335 -16.48705 -16.11233 -15.53136 -15.25512 -14.98407 -14.69310 -14.52122 -14.28909 -14.08678 -13.66759 -13.33611 -13.21994 -13.08843 -12.71841 -12.65979 -12.51875 -12.23877 -12.19151 -11.95030 -11.73484 -11.40911 -11.09310 -10.82548 -10.63400 -9.95463 -9.55374 -8.85932 -8.21496 -6.36455 -0.06636 0.42403 1.36304 1.39465 1.49298 1.68087 1.84137 1.94062 2.29544 2.40749 2.98466 3.06022 3.08465 3.43817 3.93846 4.01840 4.05320 4.36180 4.37393 4.45582 4.55397 4.62379 4.78493 4.86874 4.95887 5.01020 5.06954 5.19726 5.33888 5.38058 5.40813 5.49444 5.51853 5.57899 5.80001 6.02447 6.06298 6.08308 6.64352 6.72464 7.04185 7.30592 7.61606 8.84880 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.021968 B = 0.004298 C = 0.003765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.249340 B = 6512.372036 C = 7435.217716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.191 4.191 3 C -0.028 4.028 4 C -0.085 4.085 5 C -0.145 4.145 6 C 0.166 3.834 7 N -0.674 5.674 8 C 0.693 3.307 9 O -0.620 6.620 10 N -0.612 5.612 11 C 0.099 3.901 12 C -0.161 4.161 13 C 0.279 3.721 14 C -0.543 4.543 15 H 0.052 0.948 16 C 0.009 3.991 17 N -0.928 5.928 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.281 1.281 21 H -0.275 1.275 22 C -0.137 4.137 23 C -0.071 4.071 24 H 0.261 0.739 25 H 0.129 0.871 26 H 0.111 0.889 27 H 0.421 0.579 28 H 0.080 0.920 29 H 0.093 0.907 30 H 0.040 0.960 31 H 0.099 0.901 32 H 0.056 0.944 33 H 0.028 0.972 34 H -0.003 1.003 35 H 0.267 0.733 36 H 0.165 0.835 37 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.573 -16.678 5.352 21.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.191 4.191 3 C -0.029 4.029 4 C -0.104 4.104 5 C -0.166 4.166 6 C 0.070 3.930 7 N -0.325 5.325 8 C 0.395 3.605 9 O -0.499 6.499 10 N -0.346 5.346 11 C -0.023 4.023 12 C -0.220 4.220 13 C 0.157 3.843 14 C -0.581 4.581 15 H 0.070 0.930 16 C -0.190 4.190 17 N -0.567 5.567 18 Si 0.791 3.209 19 H -0.187 1.187 20 H -0.207 1.207 21 H -0.200 1.200 22 C -0.157 4.157 23 C -0.089 4.089 24 H 0.277 0.723 25 H 0.147 0.853 26 H 0.129 0.871 27 H 0.261 0.739 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.076 0.924 33 H 0.046 0.954 34 H 0.016 0.984 35 H 0.076 0.924 36 H 0.183 0.817 37 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -12.740 -15.856 4.920 20.926 hybrid contribution 0.676 1.075 0.430 1.341 sum -12.064 -14.780 5.350 19.814 Atomic orbital electron populations 1.25750 0.96433 0.97238 0.97936 1.20339 0.92468 1.03331 1.03004 1.16129 0.87497 0.94041 1.05272 1.21132 0.92856 0.97962 0.98452 1.21215 0.94446 0.98503 1.02457 1.17934 0.81916 0.94929 0.98203 1.42600 1.04493 1.23369 1.62020 1.16135 0.82519 0.82775 0.79077 1.90859 1.68139 1.34881 1.56064 1.47500 1.03368 1.20621 1.63094 1.21732 0.98186 0.85202 0.97203 1.22168 1.02354 0.99060 0.98378 1.18647 0.89894 0.82994 0.92745 1.21721 1.35672 1.05932 0.94809 0.92984 1.25828 0.95580 0.99649 0.97975 1.70051 1.39763 1.27642 1.19281 0.85426 0.78842 0.77879 0.78707 1.18712 1.20688 1.20007 1.21069 0.94192 0.97056 1.03421 1.21258 0.93101 0.97543 0.97025 0.72295 0.85343 0.87058 0.73876 0.90191 0.88861 0.94082 0.88230 0.92444 0.95376 0.98449 0.92400 0.81732 0.82335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 19.25 74.32 1.43 -1.24 16 2 C -0.19 -4.47 13.23 30.02 0.40 -4.08 16 3 C -0.03 -0.74 5.73 -21.37 -0.12 -0.87 16 4 C -0.09 -2.59 9.74 22.50 0.22 -2.37 16 5 C -0.15 -5.16 8.67 22.35 0.19 -4.96 16 6 C 0.17 5.09 6.30 38.23 0.24 5.33 16 7 N -0.67 -21.11 5.21 -317.07 -1.65 -22.76 16 8 C 0.69 30.01 8.12 179.05 1.45 31.46 16 9 O -0.62 -33.28 13.34 -3.97 -0.05 -33.33 16 10 N -0.61 -26.01 2.46 -844.22 -2.07 -28.08 16 11 C 0.10 2.91 5.93 86.38 0.51 3.42 16 12 C -0.16 -3.81 10.24 71.98 0.74 -3.07 16 13 C 0.28 15.09 5.16 85.63 0.44 15.53 16 14 C -0.54 -31.43 9.39 25.60 0.24 -31.19 16 15 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 16 C 0.01 0.51 5.46 84.65 0.46 0.97 16 17 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 18 Si 0.97 45.26 29.54 68.60 2.03 47.28 16 19 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 22 C -0.14 -3.02 9.95 22.35 0.22 -2.80 16 23 C -0.07 -1.52 9.74 22.50 0.22 -1.30 16 24 H 0.26 1.84 7.80 -4.42 -0.03 1.80 16 25 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 26 H 0.11 4.80 6.21 -2.91 -0.02 4.78 16 27 H 0.42 9.55 6.52 -92.70 -0.60 8.95 16 28 H 0.08 2.48 8.07 -2.39 -0.02 2.46 16 29 H 0.09 2.04 6.30 -2.39 -0.02 2.03 16 30 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.03 1.53 8.07 -2.39 -0.02 1.52 16 34 H 0.00 -0.17 7.42 -2.38 -0.02 -0.18 16 35 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.17 2.38 8.06 -2.91 -0.02 2.35 16 37 H 0.16 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -77.76 327.17 5.65 -72.11 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.47 Total: 15.97 kcal Atomic # 6 Polarization: -1.81 SS G_CDS: 6.65 Total: 4.84 kcal Atomic # 7 Polarization: -103.43 SS G_CDS: -3.44 Total: -106.86 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.05 Total: -33.33 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.28 kcal Total: -77.76 5.65 -72.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000934935104.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.624 kcal (2) G-P(sol) polarization free energy of solvation -77.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds