Wall clock time and date at job start Mon Mar 30 2020 01:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47431 * 2 1 4 4 H 1.09004 * 109.46740 * 304.99773 * 3 2 1 5 5 C 1.50697 * 109.46976 * 185.00077 * 3 2 1 6 6 H 1.08003 * 120.00242 * 239.99749 * 5 3 2 7 7 C 1.37882 * 120.00351 * 59.72533 * 5 3 2 8 8 N 1.31510 * 119.99497 * 0.27014 * 7 5 3 9 9 Si 1.86794 * 120.00061 * 180.27650 * 7 5 3 10 10 H 1.48501 * 109.47438 * 89.99632 * 9 7 5 11 11 H 1.48504 * 109.47135 * 209.99508 * 9 7 5 12 12 H 1.48500 * 109.47439 * 329.99410 * 9 7 5 13 13 N 1.46493 * 109.47267 * 64.99942 * 3 2 1 14 14 C 1.34778 * 119.99779 * 274.99882 * 13 3 2 15 15 O 1.21549 * 120.00289 * 0.02562 * 14 13 3 16 16 C 1.47866 * 119.99792 * 179.97438 * 14 13 3 17 17 C 1.39327 * 120.07095 * 353.71646 * 16 14 13 18 18 C 1.39360 * 119.69801 * 179.77237 * 17 16 14 19 19 C 1.43205 * 120.07993 * 180.23254 * 18 17 16 20 20 N 7.95256 * 93.61986 * 61.72420 * 2 1 3 21 21 C 1.39752 * 119.84091 * 0.47248 * 18 17 16 22 22 C 1.38045 * 120.13970 * 359.78018 * 21 18 17 23 23 C 1.38109 * 120.30415 * 359.97438 * 22 21 18 24 24 C 1.50691 * 119.92266 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.46971 * 300.00581 * 1 2 3 26 26 H 1.08997 * 109.46836 * 59.99960 * 1 2 3 27 27 H 1.08994 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46971 * 239.99419 * 2 1 3 29 29 H 1.08997 * 109.46836 * 120.00040 * 2 1 3 30 30 H 0.97006 * 119.99242 * 180.02562 * 8 7 5 31 31 H 0.97004 * 120.00111 * 95.00150 * 13 3 2 32 32 H 1.08001 * 120.14951 * 359.97326 * 17 16 14 33 33 H 1.07998 * 119.93704 * 179.75140 * 21 18 17 34 34 H 1.07995 * 119.85012 * 179.97438 * 22 21 18 35 35 H 1.09001 * 109.47836 * 263.39771 * 24 23 22 36 36 H 1.09008 * 109.46964 * 23.39639 * 24 23 22 37 37 H 1.08997 * 109.47216 * 143.39143 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8887 0.6523 7 6 4.1436 0.8731 -1.2253 8 7 3.4065 0.3318 -2.1703 9 14 6.0055 0.8684 -1.3750 10 1 6.5494 -0.3635 -0.7491 11 1 6.3869 0.9044 -2.8098 12 1 6.5607 2.0606 -0.6853 13 7 1.6526 2.0974 1.2517 14 6 0.4353 2.6644 1.3668 15 8 -0.3411 2.6319 0.4322 16 6 0.0440 3.3251 2.6305 17 6 0.8770 3.2498 3.7447 18 6 0.5027 3.8793 4.9304 19 6 1.3551 3.8114 6.0791 20 7 2.0321 3.7597 6.9897 21 6 -0.7087 4.5729 4.9971 22 6 -1.5315 4.6389 3.8906 23 6 -1.1640 4.0214 2.7111 24 6 -2.0690 4.0984 1.5087 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8298 -0.0703 -2.9450 31 1 2.2721 2.1231 1.9977 32 1 1.8100 2.7087 3.6889 33 1 -1.0021 5.0580 5.9163 34 1 -2.4668 5.1757 3.9475 35 1 -2.6817 3.1984 1.4567 36 1 -2.7143 4.9727 1.5950 37 1 -1.4658 4.1800 0.6045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:56 Heat of formation + Delta-G solvation = 9.673682 kcal Electronic energy + Delta-G solvation = -20290.040332 eV Core-core repulsion = 17225.183092 eV Total energy + Delta-G solvation = -3064.857240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.27183 -38.40836 -36.56789 -35.20667 -33.05073 -32.44752 -31.65962 -30.44395 -27.79338 -26.82592 -23.97758 -23.02220 -22.38625 -20.93027 -19.45288 -18.93304 -16.87666 -16.17529 -15.70331 -15.40538 -15.24595 -14.79911 -14.31660 -14.18057 -14.04760 -13.37870 -13.18898 -13.04790 -12.97892 -12.70082 -12.09427 -11.92135 -11.87682 -11.74831 -11.53829 -11.41382 -11.28077 -11.00044 -10.84332 -10.33264 -10.22107 -9.66404 -9.18250 -9.10817 -8.98143 -8.82620 -8.54140 -7.88298 -6.16285 -4.25783 0.57053 0.90717 2.52973 2.65039 3.22460 3.29922 3.31676 3.41453 3.69724 3.92889 3.99676 4.33309 4.59832 4.66318 4.85359 5.12797 5.15473 5.32318 5.46070 5.57507 5.78227 5.92343 5.95366 6.04104 6.23591 6.36052 6.42388 6.48871 6.60470 6.71344 7.00622 7.14975 7.30449 7.34366 7.37240 7.57229 7.67553 7.84955 8.13546 8.56307 8.71564 9.00686 9.41533 10.88902 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.005232 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.589495 B = 5350.721374 C = 6416.271918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.700 5.700 14 C 0.542 3.458 15 O -0.534 6.534 16 C -0.128 4.128 17 C -0.035 4.035 18 C -0.049 4.049 19 C 0.260 3.740 20 N -0.422 5.422 21 C -0.051 4.051 22 C -0.134 4.134 23 C 0.004 3.996 24 C -0.127 4.127 25 H 0.039 0.961 26 H 0.050 0.950 27 H 0.022 0.978 28 H 0.100 0.900 29 H 0.031 0.969 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.417 6.713 9.887 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.070 0.930 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.727 3.273 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.348 5.348 14 C 0.328 3.672 15 O -0.414 6.414 16 C -0.131 4.131 17 C -0.056 4.056 18 C -0.052 4.052 19 C -0.056 4.056 20 N -0.097 5.097 21 C -0.072 4.072 22 C -0.152 4.152 23 C 0.002 3.998 24 C -0.182 4.182 25 H 0.058 0.942 26 H 0.069 0.931 27 H 0.041 0.959 28 H 0.118 0.882 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.858 6.483 10.403 15.123 hybrid contribution 1.153 -0.091 0.060 1.158 sum -7.705 6.392 10.464 14.482 Atomic orbital electron populations 1.21843 0.98271 0.98130 1.01234 1.21947 0.92692 0.99693 1.02397 1.18838 0.94308 0.89225 0.80699 0.92981 1.21218 0.90643 1.39082 1.06504 0.92108 1.24862 0.98585 0.94730 0.95343 1.69887 1.35131 1.37374 1.09445 0.86469 0.84880 0.78487 0.77415 1.20540 1.21038 1.19859 1.46515 1.14310 1.55226 1.18712 1.18004 0.83112 0.79555 0.86565 1.90700 1.51168 1.59454 1.40091 1.20137 0.95845 1.02216 0.94928 1.21420 0.98737 0.94986 0.90491 1.15813 0.94652 1.05579 0.89206 1.25652 0.93314 0.93619 0.92985 1.81245 1.09094 1.08621 1.10782 1.21250 0.91638 0.95297 0.98993 1.20982 1.00531 1.01766 0.91941 1.20359 0.92841 0.90931 0.95648 1.21197 0.98553 1.01649 0.96849 0.94240 0.93052 0.95857 0.88180 0.95025 0.92523 0.77966 0.84448 0.84870 0.84507 0.90145 0.92514 0.87659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.51 37.16 0.32 -2.58 16 2 C -0.13 -2.98 5.45 -26.73 -0.15 -3.13 16 3 C 0.27 6.44 2.24 -69.09 -0.16 6.29 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.63 8.73 -34.44 -0.30 -13.93 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.94 11.28 55.43 0.63 -23.31 16 9 Si 0.90 20.21 29.54 -169.99 -5.02 15.19 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.70 -13.52 4.97 -55.88 -0.28 -13.80 16 14 C 0.54 9.75 6.27 -12.32 -0.08 9.67 16 15 O -0.53 -10.83 10.45 5.32 0.06 -10.77 16 16 C -0.13 -1.78 5.87 -105.02 -0.62 -2.40 16 17 C -0.03 -0.42 9.23 -38.76 -0.36 -0.78 16 18 C -0.05 -0.52 5.73 -106.99 -0.61 -1.14 16 19 C 0.26 3.13 15.32 -22.48 -0.34 2.79 16 20 N -0.42 -5.99 18.54 41.83 0.78 -5.22 16 21 C -0.05 -0.44 9.75 -39.09 -0.38 -0.82 16 22 C -0.13 -1.20 9.64 -39.70 -0.38 -1.58 16 23 C 0.00 0.05 5.92 -104.14 -0.62 -0.57 16 24 C -0.13 -1.51 8.72 36.00 0.31 -1.20 16 25 H 0.04 0.80 5.64 -51.93 -0.29 0.50 16 26 H 0.05 1.14 7.84 -51.93 -0.41 0.74 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 2.59 5.94 -51.93 -0.31 2.29 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.39 6.55 6.61 -40.82 -0.27 6.28 16 32 H 0.14 1.56 6.45 -52.49 -0.34 1.22 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.14 0.85 8.05 -52.49 -0.42 0.43 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.06 0.52 8.03 -51.92 -0.42 0.10 16 37 H 0.11 1.56 5.83 -51.93 -0.30 1.26 16 LS Contribution 313.27 15.07 4.72 4.72 Total: -1.00 -28.75 313.27 -6.96 -35.71 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.38 Total: 5.18 kcal Atomic # 6 Polarization: -4.25 SS G_CDS: -3.45 Total: -7.70 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: 1.12 Total: -42.33 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.06 Total: -10.77 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.75 -6.96 -35.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.383 kcal (2) G-P(sol) polarization free energy of solvation -28.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds