Wall clock time and date at job start Mon Mar 30 2020 01:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47431 * 2 1 4 4 H 1.09004 * 109.46740 * 304.99773 * 3 2 1 5 5 C 1.50697 * 109.46976 * 185.00077 * 3 2 1 6 6 H 1.08003 * 120.00242 * 239.99749 * 5 3 2 7 7 C 1.37882 * 120.00351 * 59.72533 * 5 3 2 8 8 N 1.31510 * 119.99497 * 0.27014 * 7 5 3 9 9 Si 1.86794 * 120.00061 * 180.27650 * 7 5 3 10 10 H 1.48501 * 109.47438 * 89.99632 * 9 7 5 11 11 H 1.48504 * 109.47135 * 209.99508 * 9 7 5 12 12 H 1.48500 * 109.47439 * 329.99410 * 9 7 5 13 13 N 1.46493 * 109.47267 * 64.99942 * 3 2 1 14 14 C 1.34778 * 119.99779 * 274.99882 * 13 3 2 15 15 O 1.21549 * 120.00289 * 0.02562 * 14 13 3 16 16 C 1.47866 * 119.99792 * 179.97438 * 14 13 3 17 17 C 1.39327 * 120.07095 * 353.71646 * 16 14 13 18 18 C 1.39360 * 119.69801 * 179.77237 * 17 16 14 19 19 C 1.43205 * 120.07993 * 180.23254 * 18 17 16 20 20 N 7.95256 * 93.61986 * 61.72420 * 2 1 3 21 21 C 1.39752 * 119.84091 * 0.47248 * 18 17 16 22 22 C 1.38045 * 120.13970 * 359.78018 * 21 18 17 23 23 C 1.38109 * 120.30415 * 359.97438 * 22 21 18 24 24 C 1.50691 * 119.92266 * 179.97438 * 23 22 21 25 25 H 1.08999 * 109.46971 * 300.00581 * 1 2 3 26 26 H 1.08997 * 109.46836 * 59.99960 * 1 2 3 27 27 H 1.08994 * 109.47259 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46971 * 239.99419 * 2 1 3 29 29 H 1.08997 * 109.46836 * 120.00040 * 2 1 3 30 30 H 0.97006 * 119.99242 * 180.02562 * 8 7 5 31 31 H 0.97004 * 120.00111 * 95.00150 * 13 3 2 32 32 H 1.08001 * 120.14951 * 359.97326 * 17 16 14 33 33 H 1.07998 * 119.93704 * 179.75140 * 21 18 17 34 34 H 1.07995 * 119.85012 * 179.97438 * 22 21 18 35 35 H 1.09001 * 109.47836 * 263.39771 * 24 23 22 36 36 H 1.09008 * 109.46964 * 23.39639 * 24 23 22 37 37 H 1.08997 * 109.47216 * 143.39143 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9814 -0.8419 5 6 3.5420 1.4441 -0.1239 6 1 4.1474 1.8887 0.6523 7 6 4.1436 0.8731 -1.2253 8 7 3.4065 0.3318 -2.1703 9 14 6.0055 0.8684 -1.3750 10 1 6.5494 -0.3635 -0.7491 11 1 6.3869 0.9044 -2.8098 12 1 6.5607 2.0606 -0.6853 13 7 1.6526 2.0974 1.2517 14 6 0.4353 2.6644 1.3668 15 8 -0.3411 2.6319 0.4322 16 6 0.0440 3.3251 2.6305 17 6 0.8770 3.2498 3.7447 18 6 0.5027 3.8793 4.9304 19 6 1.3551 3.8114 6.0791 20 7 2.0321 3.7597 6.9897 21 6 -0.7087 4.5729 4.9971 22 6 -1.5315 4.6389 3.8906 23 6 -1.1640 4.0214 2.7111 24 6 -2.0690 4.0984 1.5087 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8298 -0.0703 -2.9450 31 1 2.2721 2.1231 1.9977 32 1 1.8100 2.7087 3.6889 33 1 -1.0021 5.0580 5.9163 34 1 -2.4668 5.1757 3.9475 35 1 -2.6817 3.1984 1.4567 36 1 -2.7143 4.9727 1.5950 37 1 -1.4658 4.1800 0.6045 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399298.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:56 Heat of formation + Delta-G solvation = -6.693833 kcal Electronic energy + Delta-G solvation = -20290.750081 eV Core-core repulsion = 17225.183092 eV Total energy + Delta-G solvation = -3065.566989 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.41993 -39.65337 -37.62403 -36.87477 -34.53082 -33.61667 -33.20160 -31.77027 -29.10981 -28.31950 -25.34991 -24.54215 -23.35000 -22.30805 -21.13347 -20.18637 -18.45217 -17.53014 -17.08021 -16.58942 -16.48827 -16.25701 -15.84215 -15.23937 -15.09075 -14.67171 -14.57349 -14.28405 -14.04269 -13.98347 -13.66937 -13.38932 -13.16185 -13.02525 -12.76787 -12.73372 -12.69427 -12.61474 -12.31629 -12.12647 -12.02671 -11.54497 -11.02813 -10.54447 -10.38577 -10.06534 -9.79158 -9.50808 -8.15416 -6.31877 -0.31881 -0.00115 1.44353 1.45380 1.54976 1.58036 1.69583 2.26632 2.36012 2.61208 2.80955 2.92560 3.14497 3.76562 3.78331 3.94453 4.19755 4.36026 4.53625 4.60282 4.61961 4.74834 4.79679 4.90045 4.96217 5.08318 5.11448 5.22262 5.29246 5.36964 5.47369 5.54900 5.60598 5.67725 5.81461 5.83964 5.94847 6.19823 6.41273 6.75784 6.99227 7.34645 7.56966 8.89596 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018206 B = 0.005232 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.589495 B = 5350.721374 C = 6416.271918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.122 4.122 3 C 0.280 3.720 4 H 0.006 0.994 5 C -0.549 4.549 6 H 0.068 0.932 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.965 3.035 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.267 1.267 13 N -0.704 5.704 14 C 0.539 3.461 15 O -0.563 6.563 16 C -0.151 4.151 17 C -0.034 4.034 18 C -0.051 4.051 19 C 0.282 3.718 20 N -0.461 5.461 21 C -0.027 4.027 22 C -0.119 4.119 23 C -0.001 4.001 24 C -0.123 4.123 25 H 0.045 0.955 26 H 0.030 0.970 27 H 0.042 0.958 28 H 0.072 0.928 29 H 0.037 0.963 30 H 0.265 0.735 31 H 0.398 0.602 32 H 0.137 0.863 33 H 0.171 0.829 34 H 0.177 0.823 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.231 8.011 12.312 17.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.177 3.823 4 H 0.023 0.977 5 C -0.587 4.587 6 H 0.086 0.914 7 C -0.181 4.181 8 N -0.550 5.550 9 Si 0.790 3.210 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.353 5.353 14 C 0.327 3.673 15 O -0.445 6.445 16 C -0.154 4.154 17 C -0.055 4.055 18 C -0.054 4.054 19 C -0.032 4.032 20 N -0.137 5.137 21 C -0.047 4.047 22 C -0.136 4.136 23 C -0.003 4.003 24 C -0.179 4.179 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.061 0.939 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.234 0.766 32 H 0.155 0.845 33 H 0.188 0.812 34 H 0.194 0.806 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.675 7.794 12.863 17.884 hybrid contribution 1.307 -0.426 -0.671 1.530 sum -8.368 7.368 12.193 16.522 Atomic orbital electron populations 1.21670 0.96663 0.99120 1.00512 1.21794 0.94052 0.99113 1.01159 1.18371 0.93446 0.89206 0.81289 0.97653 1.21571 0.91637 1.38795 1.06721 0.91422 1.25678 1.02885 0.94441 0.95080 1.70032 1.36850 1.38179 1.09937 0.85455 0.79655 0.78708 0.77177 1.19896 1.21141 1.19178 1.46268 1.15508 1.55861 1.17634 1.18632 0.82030 0.78756 0.87845 1.90696 1.51785 1.60327 1.41688 1.19750 0.97832 1.04445 0.93357 1.21361 0.98510 0.95127 0.90532 1.15814 0.95439 1.06175 0.88009 1.25715 0.92550 0.92435 0.92535 1.81279 1.10194 1.10034 1.12167 1.21683 0.89842 0.93022 1.00188 1.21323 1.01668 1.00410 0.90206 1.20517 0.91947 0.90941 0.96889 1.21101 0.98449 1.02870 0.95522 0.93562 0.95090 0.93866 0.91001 0.94431 0.92606 0.76632 0.84493 0.81182 0.80597 0.90831 0.89133 0.91223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.51 71.98 0.61 -4.67 16 2 C -0.12 -5.87 5.45 30.59 0.17 -5.70 16 3 C 0.28 13.91 2.24 44.24 0.10 14.01 16 4 H 0.01 0.33 7.58 -2.39 -0.02 0.31 16 5 C -0.55 -28.57 8.73 25.60 0.22 -28.34 16 6 H 0.07 3.33 7.74 -2.91 -0.02 3.31 16 7 C 0.02 1.04 5.29 84.66 0.45 1.49 16 8 N -0.91 -51.22 11.28 21.45 0.24 -50.98 16 9 Si 0.96 41.84 29.54 68.60 2.03 43.86 16 10 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.29 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 13 N -0.70 -27.99 4.97 -448.98 -2.23 -30.22 16 14 C 0.54 19.89 6.27 86.79 0.54 20.44 16 15 O -0.56 -23.91 10.45 -3.87 -0.04 -23.95 16 16 C -0.15 -4.06 5.87 -20.12 -0.12 -4.18 16 17 C -0.03 -0.76 9.23 22.80 0.21 -0.55 16 18 C -0.05 -0.93 5.73 -21.40 -0.12 -1.05 16 19 C 0.28 6.12 15.32 88.34 1.35 7.48 16 20 N -0.46 -12.29 18.54 19.00 0.35 -11.94 16 21 C -0.03 -0.34 9.75 22.59 0.22 -0.12 16 22 C -0.12 -1.55 9.64 22.19 0.21 -1.34 16 23 C 0.00 -0.03 5.92 -19.55 -0.12 -0.14 16 24 C -0.12 -2.79 8.72 71.23 0.62 -2.17 16 25 H 0.05 1.91 5.64 -2.39 -0.01 1.89 16 26 H 0.03 1.43 7.84 -2.39 -0.02 1.41 16 27 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.07 3.88 5.94 -2.39 -0.01 3.87 16 29 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.26 14.14 8.31 -92.70 -0.77 13.36 16 31 H 0.40 13.72 6.61 -92.71 -0.61 13.11 16 32 H 0.14 3.00 6.45 -2.91 -0.02 2.99 16 33 H 0.17 0.99 8.06 -2.91 -0.02 0.96 16 34 H 0.18 1.03 8.05 -2.91 -0.02 1.00 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.09 1.38 8.03 -2.38 -0.02 1.36 16 37 H 0.07 2.12 5.83 -2.39 -0.01 2.11 16 Total: -1.00 -65.52 313.27 5.20 -60.32 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.49 Total: 17.77 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: 4.36 Total: -4.87 kcal Atomic # 7 Polarization: -91.50 SS G_CDS: -1.64 Total: -93.13 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.04 Total: -23.95 kcal Atomic # 14 Polarization: 41.84 SS G_CDS: 2.03 Total: 43.86 kcal Total: -65.52 5.20 -60.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399298.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.628 kcal (2) G-P(sol) polarization free energy of solvation -65.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds