Wall clock time and date at job start Mon Mar 30 2020 01:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46833 * 2 1 4 4 H 1.08995 * 109.47527 * 54.99717 * 3 2 1 5 5 C 1.50697 * 109.46745 * 175.00160 * 3 2 1 6 6 H 1.08004 * 119.99936 * 119.99832 * 5 3 2 7 7 C 1.37882 * 120.00191 * 299.99690 * 5 3 2 8 8 N 1.31512 * 119.99648 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99926 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47297 * 59.99881 * 9 7 5 11 11 H 1.48496 * 109.46523 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46985 * 299.99643 * 9 7 5 13 13 N 1.46504 * 109.47123 * 294.99489 * 3 2 1 14 14 C 1.34784 * 119.99593 * 85.00715 * 13 3 2 15 15 O 1.21558 * 119.99917 * 359.97438 * 14 13 3 16 16 C 1.47862 * 119.99994 * 179.72562 * 14 13 3 17 17 C 1.39333 * 120.06807 * 353.98896 * 16 14 13 18 18 C 1.39357 * 119.69281 * 179.74852 * 17 16 14 19 19 C 1.43203 * 120.07403 * 180.22920 * 18 17 16 20 20 N 8.08294 * 95.49588 * 303.07376 * 2 1 3 21 21 C 1.39752 * 119.84629 * 0.52238 * 18 17 16 22 22 C 1.38045 * 120.13364 * 359.75107 * 21 18 17 23 23 C 1.38105 * 120.30786 * 359.96975 * 22 21 18 24 24 C 1.50699 * 119.92179 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.46724 * 299.99909 * 1 2 3 26 26 H 1.08994 * 109.46868 * 60.00310 * 1 2 3 27 27 H 1.08999 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46704 * 239.99657 * 2 1 3 29 29 H 1.08994 * 109.46868 * 119.99689 * 2 1 3 30 30 H 0.96995 * 119.99673 * 179.97438 * 8 7 5 31 31 H 0.96991 * 120.00471 * 265.00202 * 13 3 2 32 32 H 1.07995 * 120.14834 * 359.97438 * 17 16 14 33 33 H 1.07990 * 119.93371 * 179.72853 * 21 18 17 34 34 H 1.08007 * 119.84715 * 179.97438 * 22 21 18 35 35 H 1.09000 * 109.47211 * 263.40104 * 24 23 22 36 36 H 1.09004 * 109.46952 * 23.39944 * 24 23 22 37 37 H 1.08994 * 109.47132 * 143.39115 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8813 1.3817 10 1 6.4996 2.2814 1.3819 11 1 6.3979 0.2167 2.6502 12 1 6.5975 0.1472 0.2348 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6644 -1.3670 15 8 -0.3413 2.6319 -0.4323 16 6 0.0462 3.3307 -2.6284 17 6 0.9779 3.4839 -3.6531 18 6 0.6015 4.1084 -4.8406 19 6 1.5510 4.2658 -5.9010 20 7 2.3042 4.3907 -6.7421 21 6 -0.7031 4.5863 -4.9920 22 6 -1.6191 4.4360 -3.9702 23 6 -1.2541 3.8128 -2.7930 24 6 -2.2609 3.6540 -1.6831 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0609 2.9499 31 1 2.2719 2.1231 -1.9978 32 1 1.9860 3.1171 -3.5288 33 1 -0.9951 5.0743 -5.9100 34 1 -2.6260 4.8074 -4.0920 35 1 -2.1367 4.4614 -0.9615 36 1 -3.2681 3.6896 -2.0983 37 1 -2.1064 2.6960 -1.1867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935399299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:59 Heat of formation + Delta-G solvation = 9.632250 kcal Electronic energy + Delta-G solvation = -20295.873836 eV Core-core repulsion = 17231.014799 eV Total energy + Delta-G solvation = -3064.859037 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.27305 -38.40734 -36.56248 -35.20056 -33.05510 -32.44488 -31.66401 -30.44780 -27.77515 -26.84084 -23.97936 -23.02545 -22.37685 -20.93836 -19.45356 -18.93476 -16.87249 -16.19917 -15.70552 -15.40112 -15.11541 -14.89910 -14.33810 -14.18056 -14.05667 -13.32267 -13.13966 -13.05675 -13.04053 -12.70765 -12.19261 -11.88148 -11.82298 -11.73565 -11.52780 -11.41606 -11.27461 -11.01856 -10.85243 -10.36289 -10.20830 -9.66986 -9.17515 -9.11240 -8.99245 -8.80972 -8.52901 -7.89835 -6.16044 -4.25675 0.57079 0.90756 2.53076 2.65059 3.23951 3.29530 3.30658 3.41558 3.69788 3.93779 3.98720 4.33495 4.59974 4.66405 4.85313 5.12893 5.15608 5.32345 5.46097 5.57619 5.78138 5.92431 5.95415 6.04180 6.23408 6.35408 6.41431 6.48924 6.59657 6.71122 7.00204 7.14480 7.30390 7.34540 7.36808 7.57067 7.67464 7.84967 8.13428 8.56333 8.71471 9.00672 9.41593 10.89163 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018094 B = 0.005306 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.104142 B = 5275.916242 C = 6477.363050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.700 5.700 14 C 0.542 3.458 15 O -0.534 6.534 16 C -0.128 4.128 17 C -0.035 4.035 18 C -0.049 4.049 19 C 0.259 3.741 20 N -0.422 5.422 21 C -0.051 4.051 22 C -0.134 4.134 23 C 0.004 3.996 24 C -0.127 4.127 25 H 0.050 0.950 26 H 0.038 0.962 27 H 0.023 0.977 28 H 0.031 0.969 29 H 0.100 0.900 30 H 0.265 0.735 31 H 0.387 0.613 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.772 5.858 -10.206 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.348 5.348 14 C 0.328 3.672 15 O -0.414 6.414 16 C -0.131 4.131 17 C -0.056 4.056 18 C -0.052 4.052 19 C -0.056 4.056 20 N -0.097 5.097 21 C -0.072 4.072 22 C -0.152 4.152 23 C 0.002 3.998 24 C -0.183 4.183 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.050 0.950 29 H 0.118 0.882 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.156 0.844 33 H 0.151 0.849 34 H 0.155 0.845 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -9.094 5.897 -10.611 15.169 hybrid contribution 1.164 -0.053 -0.056 1.166 sum -7.931 5.844 -10.668 14.521 Atomic orbital electron populations 1.21850 0.98312 0.98151 1.01189 1.21943 0.92676 0.99699 1.02394 1.18835 0.94290 0.89229 0.80686 0.92980 1.21178 0.90647 1.39318 1.06388 0.92169 1.24859 0.98570 0.94711 0.95337 1.69873 1.35241 1.37415 1.09313 0.86528 0.84868 0.78355 0.77494 1.20171 1.21094 1.20164 1.46517 1.14197 1.55352 1.18695 1.18008 0.83126 0.79501 0.86610 1.90702 1.50533 1.60503 1.39691 1.20135 0.94307 1.02919 0.95775 1.21426 0.99658 0.93977 0.90562 1.15814 0.91591 1.06826 0.91013 1.25658 0.93249 0.93579 0.93093 1.81252 1.09181 1.08887 1.10416 1.21249 0.90984 0.95886 0.99056 1.20982 1.00185 1.01212 0.92849 1.20357 0.93539 0.90813 0.95077 1.21201 0.94917 1.06156 0.95994 0.93041 0.94269 0.95824 0.94998 0.88202 0.92458 0.77970 0.84424 0.84869 0.84509 0.90118 0.92525 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.51 37.16 0.32 -2.56 16 2 C -0.13 -2.97 5.45 -26.73 -0.15 -3.12 16 3 C 0.27 6.45 2.24 -69.08 -0.15 6.30 16 4 H 0.05 1.43 7.58 -51.93 -0.39 1.04 16 5 C -0.54 -13.66 8.73 -34.44 -0.30 -13.96 16 6 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 7 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 8 N -0.88 -23.95 11.29 55.43 0.63 -23.32 16 9 Si 0.90 20.23 29.54 -169.99 -5.02 15.21 16 10 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 11 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 N -0.70 -13.52 4.97 -55.87 -0.28 -13.80 16 14 C 0.54 9.75 6.27 -12.32 -0.08 9.67 16 15 O -0.53 -10.84 10.45 5.31 0.06 -10.78 16 16 C -0.13 -1.78 5.87 -105.02 -0.62 -2.40 16 17 C -0.03 -0.42 9.23 -38.76 -0.36 -0.78 16 18 C -0.05 -0.52 5.73 -106.99 -0.61 -1.14 16 19 C 0.26 3.14 15.32 -22.47 -0.34 2.79 16 20 N -0.42 -6.00 18.54 41.84 0.78 -5.23 16 21 C -0.05 -0.44 9.75 -39.09 -0.38 -0.82 16 22 C -0.13 -1.20 9.64 -39.70 -0.38 -1.58 16 23 C 0.00 0.05 5.92 -104.14 -0.62 -0.57 16 24 C -0.13 -1.51 8.72 36.01 0.31 -1.20 16 25 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 26 H 0.04 0.78 5.64 -51.93 -0.29 0.49 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.10 2.58 5.95 -51.93 -0.31 2.27 16 30 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.39 6.55 6.60 -40.82 -0.27 6.28 16 32 H 0.14 1.57 6.45 -52.49 -0.34 1.23 16 33 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.14 0.85 8.05 -52.48 -0.42 0.43 16 35 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.51 8.03 -51.93 -0.42 0.10 16 37 H 0.11 1.55 5.83 -51.93 -0.30 1.25 16 LS Contribution 313.28 15.07 4.72 4.72 Total: -1.00 -28.74 313.28 -6.96 -35.70 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.39 Total: 5.18 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -3.45 Total: -7.67 kcal Atomic # 7 Polarization: -43.48 SS G_CDS: 1.12 Total: -42.35 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.06 Total: -10.78 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.74 -6.96 -35.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.333 kcal (2) G-P(sol) polarization free energy of solvation -28.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds