Wall clock time and date at job start Mon Mar 30 2020 01:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52996 * 109.46833 * 2 1 4 4 H 1.08995 * 109.47527 * 54.99717 * 3 2 1 5 5 C 1.50697 * 109.46745 * 175.00160 * 3 2 1 6 6 H 1.08004 * 119.99936 * 119.99832 * 5 3 2 7 7 C 1.37882 * 120.00191 * 299.99690 * 5 3 2 8 8 N 1.31512 * 119.99648 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99926 * 180.02562 * 7 5 3 10 10 H 1.48491 * 109.47297 * 59.99881 * 9 7 5 11 11 H 1.48496 * 109.46523 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46985 * 299.99643 * 9 7 5 13 13 N 1.46504 * 109.47123 * 294.99489 * 3 2 1 14 14 C 1.34784 * 119.99593 * 85.00715 * 13 3 2 15 15 O 1.21558 * 119.99917 * 359.97438 * 14 13 3 16 16 C 1.47862 * 119.99994 * 179.72562 * 14 13 3 17 17 C 1.39333 * 120.06807 * 353.98896 * 16 14 13 18 18 C 1.39357 * 119.69281 * 179.74852 * 17 16 14 19 19 C 1.43203 * 120.07403 * 180.22920 * 18 17 16 20 20 N 8.08294 * 95.49588 * 303.07376 * 2 1 3 21 21 C 1.39752 * 119.84629 * 0.52238 * 18 17 16 22 22 C 1.38045 * 120.13364 * 359.75107 * 21 18 17 23 23 C 1.38105 * 120.30786 * 359.96975 * 22 21 18 24 24 C 1.50699 * 119.92179 * 179.97438 * 23 22 21 25 25 H 1.09001 * 109.46724 * 299.99909 * 1 2 3 26 26 H 1.08994 * 109.46868 * 60.00310 * 1 2 3 27 27 H 1.08999 * 109.47098 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46704 * 239.99657 * 2 1 3 29 29 H 1.08994 * 109.46868 * 119.99689 * 2 1 3 30 30 H 0.96995 * 119.99673 * 179.97438 * 8 7 5 31 31 H 0.96991 * 120.00471 * 265.00202 * 13 3 2 32 32 H 1.07995 * 120.14834 * 359.97438 * 17 16 14 33 33 H 1.07990 * 119.93371 * 179.72853 * 21 18 17 34 34 H 1.08007 * 119.84715 * 179.97438 * 22 21 18 35 35 H 1.09000 * 109.47211 * 263.40104 * 24 23 22 36 36 H 1.09004 * 109.46952 * 23.39944 * 24 23 22 37 37 H 1.08994 * 109.47132 * 143.39115 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8888 -0.6524 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3375 2.1733 9 14 6.0050 0.8813 1.3817 10 1 6.4996 2.2814 1.3819 11 1 6.3979 0.2167 2.6502 12 1 6.5975 0.1472 0.2348 13 7 1.6525 2.0974 -1.2519 14 6 0.4352 2.6644 -1.3670 15 8 -0.3413 2.6319 -0.4323 16 6 0.0462 3.3307 -2.6284 17 6 0.9779 3.4839 -3.6531 18 6 0.6015 4.1084 -4.8406 19 6 1.5510 4.2658 -5.9010 20 7 2.3042 4.3907 -6.7421 21 6 -0.7031 4.5863 -4.9920 22 6 -1.6191 4.4360 -3.9702 23 6 -1.2541 3.8128 -2.7930 24 6 -2.2609 3.6540 -1.6831 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0609 2.9499 31 1 2.2719 2.1231 -1.9978 32 1 1.9860 3.1171 -3.5288 33 1 -0.9951 5.0743 -5.9100 34 1 -2.6260 4.8074 -4.0920 35 1 -2.1367 4.4614 -0.9615 36 1 -3.2681 3.6896 -2.0983 37 1 -2.1064 2.6960 -1.1867 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935399299.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:58 Heat of formation + Delta-G solvation = -6.736069 kcal Electronic energy + Delta-G solvation = -20296.583619 eV Core-core repulsion = 17231.014799 eV Total energy + Delta-G solvation = -3065.568820 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.42184 -39.65241 -37.61981 -36.86962 -34.53071 -33.62101 -33.20310 -31.76704 -29.09099 -28.33177 -25.35577 -24.53613 -23.34188 -22.31541 -21.13307 -20.18870 -18.44957 -17.54876 -17.07090 -16.56262 -16.38691 -16.30799 -15.94920 -15.19043 -15.10477 -14.61265 -14.56810 -14.33816 -14.07254 -13.98247 -13.64440 -13.38277 -13.15870 -12.97628 -12.79248 -12.74950 -12.66478 -12.64152 -12.31499 -12.15758 -12.00162 -11.54196 -11.03876 -10.55673 -10.34530 -10.06760 -9.78323 -9.52945 -8.15265 -6.31837 -0.31913 -0.00206 1.45126 1.45762 1.53498 1.57883 1.69494 2.26918 2.35648 2.61256 2.80782 2.92585 3.14525 3.76582 3.78376 3.94484 4.19841 4.35983 4.53987 4.60440 4.62348 4.74927 4.79810 4.90272 4.96322 5.08355 5.11594 5.22266 5.29458 5.37152 5.47812 5.55311 5.60180 5.67838 5.81650 5.84235 5.94939 6.19885 6.41216 6.75572 6.99218 7.34613 7.56941 8.89593 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018094 B = 0.005306 C = 0.004322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1547.104142 B = 5275.916242 C = 6477.363050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C 0.280 3.720 4 H 0.005 0.995 5 C -0.550 4.550 6 H 0.068 0.932 7 C 0.020 3.980 8 N -0.912 5.912 9 Si 0.964 3.036 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.268 1.268 13 N -0.704 5.704 14 C 0.539 3.461 15 O -0.563 6.563 16 C -0.151 4.151 17 C -0.034 4.034 18 C -0.051 4.051 19 C 0.282 3.718 20 N -0.461 5.461 21 C -0.027 4.027 22 C -0.119 4.119 23 C -0.001 4.001 24 C -0.124 4.124 25 H 0.030 0.970 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.037 0.963 29 H 0.071 0.929 30 H 0.265 0.735 31 H 0.398 0.602 32 H 0.137 0.863 33 H 0.171 0.829 34 H 0.177 0.823 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.680 6.982 -12.698 18.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.161 4.161 3 C 0.177 3.823 4 H 0.023 0.977 5 C -0.588 4.588 6 H 0.086 0.914 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.789 3.211 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.192 1.192 13 N -0.353 5.353 14 C 0.327 3.673 15 O -0.445 6.445 16 C -0.154 4.154 17 C -0.055 4.055 18 C -0.054 4.054 19 C -0.032 4.032 20 N -0.137 5.137 21 C -0.047 4.047 22 C -0.136 4.136 23 C -0.003 4.003 24 C -0.180 4.180 25 H 0.049 0.951 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.234 0.766 32 H 0.155 0.845 33 H 0.188 0.812 34 H 0.194 0.806 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -10.006 7.035 -13.139 17.951 hybrid contribution 1.343 -0.343 0.690 1.549 sum -8.663 6.691 -12.449 16.577 Atomic orbital electron populations 1.21677 0.96626 0.99168 1.00520 1.21790 0.94108 0.99070 1.01142 1.18369 0.93425 0.89236 0.81263 0.97692 1.21544 0.91661 1.39017 1.06627 0.91421 1.25676 1.02867 0.94424 0.95080 1.70022 1.36935 1.38229 1.09787 0.85517 0.79659 0.78359 0.77517 1.19822 1.21083 1.19248 1.46269 1.15393 1.55981 1.17621 1.18636 0.82022 0.78711 0.87901 1.90698 1.51144 1.61387 1.41290 1.19748 0.95986 1.05310 0.94341 1.21362 0.99364 0.94100 0.90722 1.15814 0.92386 1.07291 0.89944 1.25725 0.92587 0.92399 0.92535 1.81286 1.10208 1.10359 1.11829 1.21682 0.89424 0.93550 1.00067 1.21326 1.01892 0.99414 0.90976 1.20516 0.92456 0.91001 0.96296 1.21110 0.96960 1.03922 0.96005 0.95093 0.93498 0.93810 0.94418 0.91037 0.92592 0.76633 0.84531 0.81180 0.80584 0.91042 0.89080 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.26 8.51 71.99 0.61 -4.65 16 2 C -0.12 -5.85 5.45 30.60 0.17 -5.69 16 3 C 0.28 13.92 2.24 44.24 0.10 14.02 16 4 H 0.01 0.30 7.58 -2.39 -0.02 0.29 16 5 C -0.55 -28.65 8.73 25.60 0.22 -28.43 16 6 H 0.07 3.33 7.74 -2.91 -0.02 3.30 16 7 C 0.02 1.06 5.29 84.66 0.45 1.51 16 8 N -0.91 -51.25 11.29 21.45 0.24 -51.01 16 9 Si 0.96 41.86 29.54 68.60 2.03 43.89 16 10 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 11 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 13 N -0.70 -27.99 4.97 -448.95 -2.23 -30.22 16 14 C 0.54 19.89 6.27 86.79 0.54 20.43 16 15 O -0.56 -23.91 10.45 -3.90 -0.04 -23.95 16 16 C -0.15 -4.06 5.87 -20.12 -0.12 -4.18 16 17 C -0.03 -0.77 9.23 22.80 0.21 -0.56 16 18 C -0.05 -0.93 5.73 -21.40 -0.12 -1.05 16 19 C 0.28 6.14 15.32 88.33 1.35 7.49 16 20 N -0.46 -12.33 18.54 19.00 0.35 -11.98 16 21 C -0.03 -0.34 9.75 22.59 0.22 -0.12 16 22 C -0.12 -1.55 9.64 22.19 0.21 -1.33 16 23 C 0.00 -0.02 5.92 -19.55 -0.12 -0.14 16 24 C -0.12 -2.79 8.72 71.24 0.62 -2.17 16 25 H 0.03 1.42 7.84 -2.39 -0.02 1.40 16 26 H 0.05 1.91 5.64 -2.39 -0.01 1.90 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.70 16 29 H 0.07 3.86 5.95 -2.39 -0.01 3.84 16 30 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 31 H 0.40 13.72 6.60 -92.72 -0.61 13.11 16 32 H 0.14 3.02 6.45 -2.91 -0.02 3.01 16 33 H 0.17 0.99 8.06 -2.92 -0.02 0.96 16 34 H 0.18 1.02 8.05 -2.91 -0.02 1.00 16 35 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.09 1.37 8.03 -2.39 -0.02 1.35 16 37 H 0.07 2.15 5.83 -2.39 -0.01 2.14 16 Total: -1.00 -65.54 313.28 5.20 -60.34 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.49 Total: 17.79 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 4.36 Total: -4.85 kcal Atomic # 7 Polarization: -91.57 SS G_CDS: -1.64 Total: -93.21 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.04 Total: -23.95 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Total: -65.54 5.20 -60.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935399299.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.602 kcal (2) G-P(sol) polarization free energy of solvation -65.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds