Wall clock time and date at job start Mon Mar 30 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99641 * 2 1 4 4 O 1.21281 * 119.99479 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.00407 * 359.72363 * 3 2 1 6 6 F 1.39898 * 110.45662 * 54.57405 * 5 3 2 7 7 C 1.54506 * 110.51478 * 177.18278 * 5 3 2 8 8 C 1.54481 * 104.06525 * 118.64286 * 7 5 3 9 9 O 1.44424 * 104.80100 * 23.98186 * 8 7 5 10 10 C 1.44643 * 105.36777 * 319.56051 * 9 8 7 11 11 C 1.46495 * 120.00107 * 179.97438 * 2 1 3 12 12 C 1.53951 * 113.74291 * 36.67406 * 11 2 1 13 13 N 1.47578 * 86.11581 * 222.04836 * 12 11 2 14 14 C 1.36940 * 134.49007 * 204.63810 * 13 12 11 15 15 H 1.07997 * 119.99807 * 173.48217 * 14 13 12 16 16 C 1.38814 * 119.99806 * 353.48586 * 14 13 12 17 17 N 1.31612 * 120.00046 * 5.06258 * 16 14 13 18 18 Si 1.86800 * 119.99625 * 185.06469 * 16 14 13 19 19 H 1.48500 * 109.47369 * 94.98680 * 18 16 14 20 20 H 1.48506 * 109.46913 * 214.98668 * 18 16 14 21 21 H 1.48497 * 109.47247 * 334.98625 * 18 16 14 22 22 C 1.47582 * 91.01888 * 24.64153 * 13 12 11 23 23 H 1.09003 * 109.47020 * 90.00223 * 1 2 3 24 24 H 1.09005 * 109.47221 * 210.00229 * 1 2 3 25 25 H 1.08995 * 109.47476 * 330.00267 * 1 2 3 26 26 H 1.08997 * 110.51252 * 237.29012 * 7 5 3 27 27 H 1.08999 * 110.51325 * 359.86088 * 7 5 3 28 28 H 1.09003 * 110.36935 * 142.80729 * 8 7 5 29 29 H 1.08992 * 110.37440 * 265.03399 * 8 7 5 30 30 H 1.09001 * 110.34345 * 281.59710 * 10 9 8 31 31 H 1.09005 * 110.50421 * 159.18540 * 10 9 8 32 32 H 1.09003 * 112.94425 * 168.40795 * 11 2 1 33 33 H 1.08998 * 113.76901 * 336.35037 * 12 11 2 34 34 H 1.09002 * 113.76613 * 107.74670 * 12 11 2 35 35 H 0.97006 * 119.99751 * 179.97438 * 17 16 14 36 36 H 1.08997 * 113.76636 * 221.06146 * 22 13 12 37 37 H 1.08995 * 113.76852 * 89.65672 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0063 6 9 0.4785 2.5184 1.0579 7 6 2.3660 3.6640 0.0661 8 6 2.1117 4.4396 -1.2455 9 8 0.7667 4.0816 -1.6310 10 6 0.6515 2.6671 -1.3517 11 6 2.1975 -1.2687 0.0006 12 6 1.5286 -2.3710 -0.8406 13 7 1.8682 -3.2836 0.2683 14 6 2.0737 -4.6336 0.3715 15 1 2.4208 -5.0573 1.3023 16 6 1.8361 -5.4573 -0.7203 17 7 1.5096 -4.9321 -1.8821 18 14 1.9795 -7.3110 -0.5403 19 1 0.6390 -7.8867 -0.2629 20 1 2.5164 -7.8903 -1.7980 21 1 2.8972 -7.6298 0.5828 22 6 1.8972 -2.1572 1.2214 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 2.1428 4.2904 0.9296 27 1 3.3958 3.3092 0.1089 28 1 2.1835 5.5132 -1.0714 29 1 2.8227 4.1319 -2.0122 30 1 1.1360 2.0853 -2.1359 31 1 -0.3960 2.3806 -1.2575 32 1 3.2615 -1.1451 -0.2012 33 1 0.4570 -2.2282 -0.9796 34 1 2.0534 -2.5940 -1.7696 35 1 1.3439 -5.5077 -2.6451 36 1 2.7163 -2.2097 1.9387 37 1 0.9339 -1.9516 1.6880 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043648667.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:34 Heat of formation + Delta-G solvation = -54.000127 kcal Electronic energy + Delta-G solvation = -21895.592077 eV Core-core repulsion = 18397.204509 eV Total energy + Delta-G solvation = -3498.387568 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.22961 -40.23793 -38.92445 -37.62444 -34.66640 -32.19027 -31.82653 -29.55221 -27.70861 -26.85838 -24.90068 -24.32220 -23.36322 -22.05256 -19.89171 -18.76007 -17.86359 -17.13218 -16.89206 -16.42154 -16.06493 -15.61903 -15.20954 -14.89469 -14.74778 -14.31853 -13.96224 -13.87187 -13.24136 -12.86635 -12.64770 -12.39025 -12.24542 -11.99132 -11.83236 -11.65000 -11.51401 -11.41158 -11.16241 -10.92007 -10.77591 -10.34745 -10.14341 -10.10202 -9.66519 -9.61909 -8.86538 -8.33112 -6.97744 -5.86991 -3.19194 2.38215 2.88335 3.35491 3.40827 3.42801 3.54302 3.78381 4.08380 4.30563 4.38567 4.43218 4.81333 4.84091 5.09465 5.25473 5.28477 5.34419 5.36104 5.39474 5.44809 5.62692 5.65076 5.67700 5.82784 5.97024 6.05181 6.32716 6.36378 6.48899 6.61557 7.09634 7.17794 7.41974 7.53049 7.87898 8.06041 8.95528 9.61388 10.48029 11.30857 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.043591 B = 0.004148 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.173121 B = 6748.571058 C = 6829.547064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.053 3.947 2 N -0.583 5.583 3 C 0.502 3.498 4 O -0.526 6.526 5 C 0.072 3.928 6 F -0.180 7.180 7 C -0.171 4.171 8 C 0.046 3.954 9 O -0.365 6.365 10 C 0.035 3.965 11 C 0.085 3.915 12 C 0.161 3.839 13 N -0.605 5.605 14 C -0.226 4.226 15 H 0.083 0.917 16 C -0.004 4.004 17 N -0.919 5.919 18 Si 0.913 3.087 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.108 3.892 23 H 0.060 0.940 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.095 0.905 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.255 0.745 36 H 0.048 0.952 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.301 17.225 1.752 17.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.314 5.314 3 C 0.286 3.714 4 O -0.402 6.402 5 C 0.050 3.950 6 F -0.161 7.161 7 C -0.209 4.209 8 C -0.031 4.031 9 O -0.283 6.283 10 C -0.043 4.043 11 C -0.018 4.018 12 C 0.035 3.965 13 N -0.331 5.331 14 C -0.353 4.353 15 H 0.101 0.899 16 C -0.201 4.201 17 N -0.565 5.565 18 Si 0.743 3.257 19 H -0.215 1.215 20 H -0.216 1.216 21 H -0.204 1.204 22 C -0.018 4.018 23 H 0.079 0.921 24 H 0.102 0.898 25 H 0.102 0.898 26 H 0.114 0.886 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.053 0.947 34 H 0.092 0.908 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.834 16.983 1.568 17.154 hybrid contribution -0.146 -1.277 0.303 1.320 sum -1.980 15.707 1.871 15.941 Atomic orbital electron populations 1.22256 0.79335 1.04856 1.02525 1.48047 1.07388 1.05915 1.70044 1.20331 0.88118 0.85050 0.77855 1.90690 1.13156 1.86500 1.49893 1.22535 0.89212 0.96112 0.87140 1.92838 1.68222 1.97045 1.57963 1.23544 1.02004 0.94860 1.00458 1.23486 0.84353 1.00685 0.94575 1.89207 1.30766 1.22620 1.85744 1.24091 1.02678 0.84223 0.93315 1.24237 0.98059 0.79494 0.99994 1.22569 0.96768 0.83336 0.93830 1.45635 1.81293 1.02175 1.04035 1.19010 1.38446 0.79748 0.98133 0.89926 1.24834 1.01313 0.98256 0.95712 1.69824 1.52655 1.33902 1.00134 0.86083 0.77670 0.84820 0.77108 1.21515 1.21597 1.20441 1.22975 0.98310 0.87126 0.93439 0.92142 0.89751 0.89788 0.88646 0.86574 0.88111 0.91232 0.89687 0.86680 0.86511 0.94698 0.90778 0.93469 0.93372 0.94523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.69 7.76 59.85 0.46 1.16 16 2 N -0.58 -9.30 3.09 -175.74 -0.54 -9.85 16 3 C 0.50 7.83 6.70 -10.99 -0.07 7.76 16 4 O -0.53 -9.61 14.77 5.56 0.08 -9.53 16 5 C 0.07 0.89 1.17 -90.21 -0.11 0.79 16 6 F -0.18 -2.30 14.44 2.25 0.03 -2.27 16 7 C -0.17 -1.81 6.52 -25.16 -0.16 -1.98 16 8 C 0.05 0.42 7.64 37.93 0.29 0.71 16 9 O -0.37 -4.19 11.65 -35.23 -0.41 -4.60 16 10 C 0.03 0.38 6.08 37.94 0.23 0.61 16 11 C 0.09 1.66 4.40 -70.14 -0.31 1.35 16 12 C 0.16 3.67 6.84 -2.97 -0.02 3.65 16 13 N -0.60 -15.32 3.70 -178.08 -0.66 -15.98 16 14 C -0.23 -6.27 10.70 -15.06 -0.16 -6.44 16 15 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 16 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 17 N -0.92 -26.73 11.51 55.49 0.64 -26.09 16 18 Si 0.91 21.81 29.56 -169.99 -5.02 16.79 16 19 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 22 C 0.11 2.24 8.46 -2.97 -0.03 2.22 16 23 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 24 H 0.08 1.18 6.36 -51.93 -0.33 0.85 16 25 H 0.08 0.96 4.88 -51.93 -0.25 0.70 16 26 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 27 H 0.12 1.35 6.51 -51.93 -0.34 1.01 16 28 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.92 7.86 -51.93 -0.41 0.51 16 31 H 0.12 1.08 7.55 -51.93 -0.39 0.69 16 32 H 0.12 2.44 7.24 -51.93 -0.38 2.06 16 33 H 0.04 0.78 6.71 -51.93 -0.35 0.43 16 34 H 0.07 1.89 7.35 -51.93 -0.38 1.51 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.04 0.72 6.97 -51.93 -0.36 0.36 16 LS Contribution 299.97 15.07 4.52 4.52 Total: -1.00 -31.77 299.97 -6.18 -37.95 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.84 Total: -0.55 kcal Atomic # 6 Polarization: 9.59 SS G_CDS: 0.03 Total: 9.62 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.56 Total: -51.92 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.33 Total: -14.13 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.03 Total: -2.27 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.77 -6.18 -37.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043648667.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.054 kcal (2) G-P(sol) polarization free energy of solvation -31.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds