Wall clock time and date at job start Mon Mar 30 2020 01:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34775 * 119.99641 * 2 1 4 4 O 1.21281 * 119.99479 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.00407 * 359.72363 * 3 2 1 6 6 F 1.39898 * 110.45662 * 54.57405 * 5 3 2 7 7 C 1.54506 * 110.51478 * 177.18278 * 5 3 2 8 8 C 1.54481 * 104.06525 * 118.64286 * 7 5 3 9 9 O 1.44424 * 104.80100 * 23.98186 * 8 7 5 10 10 C 1.44643 * 105.36777 * 319.56051 * 9 8 7 11 11 C 1.46495 * 120.00107 * 179.97438 * 2 1 3 12 12 C 1.53951 * 113.74291 * 36.67406 * 11 2 1 13 13 N 1.47578 * 86.11581 * 222.04836 * 12 11 2 14 14 C 1.36940 * 134.49007 * 204.63810 * 13 12 11 15 15 H 1.07997 * 119.99807 * 173.48217 * 14 13 12 16 16 C 1.38814 * 119.99806 * 353.48586 * 14 13 12 17 17 N 1.31612 * 120.00046 * 5.06258 * 16 14 13 18 18 Si 1.86800 * 119.99625 * 185.06469 * 16 14 13 19 19 H 1.48500 * 109.47369 * 94.98680 * 18 16 14 20 20 H 1.48506 * 109.46913 * 214.98668 * 18 16 14 21 21 H 1.48497 * 109.47247 * 334.98625 * 18 16 14 22 22 C 1.47582 * 91.01888 * 24.64153 * 13 12 11 23 23 H 1.09003 * 109.47020 * 90.00223 * 1 2 3 24 24 H 1.09005 * 109.47221 * 210.00229 * 1 2 3 25 25 H 1.08995 * 109.47476 * 330.00267 * 1 2 3 26 26 H 1.08997 * 110.51252 * 237.29012 * 7 5 3 27 27 H 1.08999 * 110.51325 * 359.86088 * 7 5 3 28 28 H 1.09003 * 110.36935 * 142.80729 * 8 7 5 29 29 H 1.08992 * 110.37440 * 265.03399 * 8 7 5 30 30 H 1.09001 * 110.34345 * 281.59710 * 10 9 8 31 31 H 1.09005 * 110.50421 * 159.18540 * 10 9 8 32 32 H 1.09003 * 112.94425 * 168.40795 * 11 2 1 33 33 H 1.08998 * 113.76901 * 336.35037 * 12 11 2 34 34 H 1.09002 * 113.76613 * 107.74670 * 12 11 2 35 35 H 0.97006 * 119.99751 * 179.97438 * 17 16 14 36 36 H 1.08997 * 113.76636 * 221.06146 * 22 13 12 37 37 H 1.08995 * 113.76852 * 89.65672 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0063 6 9 0.4785 2.5184 1.0579 7 6 2.3660 3.6640 0.0661 8 6 2.1117 4.4396 -1.2455 9 8 0.7667 4.0816 -1.6310 10 6 0.6515 2.6671 -1.3517 11 6 2.1975 -1.2687 0.0006 12 6 1.5286 -2.3710 -0.8406 13 7 1.8682 -3.2836 0.2683 14 6 2.0737 -4.6336 0.3715 15 1 2.4208 -5.0573 1.3023 16 6 1.8361 -5.4573 -0.7203 17 7 1.5096 -4.9321 -1.8821 18 14 1.9795 -7.3110 -0.5403 19 1 0.6390 -7.8867 -0.2629 20 1 2.5164 -7.8903 -1.7980 21 1 2.8972 -7.6298 0.5828 22 6 1.8972 -2.1572 1.2214 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3634 -0.8900 0.5139 25 1 -0.3634 0.8899 0.5138 26 1 2.1428 4.2904 0.9296 27 1 3.3958 3.3092 0.1089 28 1 2.1835 5.5132 -1.0714 29 1 2.8227 4.1319 -2.0122 30 1 1.1360 2.0853 -2.1359 31 1 -0.3960 2.3806 -1.2575 32 1 3.2615 -1.1451 -0.2012 33 1 0.4570 -2.2282 -0.9796 34 1 2.0534 -2.5940 -1.7696 35 1 1.3439 -5.5077 -2.6451 36 1 2.7163 -2.2097 1.9387 37 1 0.9339 -1.9516 1.6880 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043648667.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:34 Heat of formation + Delta-G solvation = -75.907119 kcal Electronic energy + Delta-G solvation = -21896.542036 eV Core-core repulsion = 18397.204509 eV Total energy + Delta-G solvation = -3499.337527 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.132 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.23521 -41.50510 -40.07803 -39.05636 -36.12092 -34.09080 -32.84999 -30.55241 -29.44156 -28.10638 -26.67392 -25.79174 -24.38054 -23.38188 -21.19936 -20.25445 -19.08065 -18.75488 -18.10422 -17.72403 -17.06558 -16.92592 -16.59217 -16.16054 -16.04081 -15.72216 -15.37207 -15.03308 -14.62074 -14.09326 -13.96984 -13.64815 -13.42884 -13.40125 -13.24402 -13.16298 -12.85113 -12.75885 -12.61860 -12.39396 -12.10265 -12.07788 -11.92211 -11.59634 -10.98107 -10.90228 -10.88680 -9.73311 -8.98793 -7.97314 -5.30905 1.14342 1.45640 1.46926 1.56291 1.63642 2.45193 2.68296 2.77446 3.15963 3.20852 3.31607 3.41495 3.52703 3.74095 3.98968 4.09495 4.13688 4.25908 4.33591 4.46464 4.53251 4.57553 4.67618 4.74129 4.79214 4.79971 4.88312 4.89887 5.10194 5.15602 5.43480 5.52465 5.55720 5.85203 6.19326 6.77961 6.86196 7.53751 8.46942 9.20450 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.043591 B = 0.004148 C = 0.004099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.173121 B = 6748.571058 C = 6829.547064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.585 5.585 3 C 0.501 3.499 4 O -0.556 6.556 5 C 0.077 3.923 6 F -0.180 7.180 7 C -0.169 4.169 8 C 0.045 3.955 9 O -0.375 6.375 10 C 0.037 3.963 11 C 0.112 3.888 12 C 0.166 3.834 13 N -0.635 5.635 14 C -0.241 4.241 15 H 0.085 0.915 16 C -0.059 4.059 17 N -0.950 5.950 18 Si 0.980 3.020 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.268 1.268 22 C 0.113 3.887 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.105 0.895 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.127 0.873 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.100 0.900 33 H 0.041 0.959 34 H 0.039 0.961 35 H 0.251 0.749 36 H 0.052 0.948 37 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.088 18.413 2.416 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 N -0.315 5.315 3 C 0.287 3.713 4 O -0.435 6.435 5 C 0.055 3.945 6 F -0.160 7.160 7 C -0.207 4.207 8 C -0.031 4.031 9 O -0.294 6.294 10 C -0.041 4.041 11 C 0.007 3.993 12 C 0.040 3.960 13 N -0.362 5.362 14 C -0.369 4.369 15 H 0.103 0.897 16 C -0.253 4.253 17 N -0.598 5.598 18 Si 0.808 3.192 19 H -0.212 1.212 20 H -0.220 1.220 21 H -0.192 1.192 22 C -0.013 4.013 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.123 0.877 26 H 0.128 0.872 27 H 0.122 0.878 28 H 0.145 0.855 29 H 0.091 0.909 30 H 0.102 0.898 31 H 0.151 0.849 32 H 0.118 0.882 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.637 18.213 2.260 18.542 hybrid contribution 0.121 -1.567 0.130 1.577 sum -2.516 16.646 2.390 17.004 Atomic orbital electron populations 1.22444 0.77269 1.05461 1.03887 1.47993 1.08517 1.04855 1.70159 1.20896 0.87943 0.85832 0.76659 1.90680 1.14713 1.87103 1.50991 1.22507 0.89550 0.94475 0.88008 1.92839 1.68159 1.96906 1.58119 1.23579 1.00790 0.94389 1.01983 1.23654 0.83553 1.02079 0.93798 1.89204 1.31810 1.22559 1.85807 1.24139 1.03510 0.84318 0.92136 1.23494 0.97068 0.80652 0.98094 1.22433 0.96795 0.84351 0.92404 1.45936 1.81655 1.02413 1.06225 1.19381 1.37937 0.81305 0.98240 0.89679 1.25650 1.01655 1.02556 0.95445 1.69993 1.54052 1.35085 1.00655 0.85042 0.77713 0.79470 0.76987 1.21157 1.21997 1.19245 1.23072 0.99283 0.85512 0.93391 0.90480 0.90590 0.87651 0.87175 0.87754 0.85468 0.90868 0.89811 0.84903 0.88210 0.94103 0.94235 0.93964 0.92977 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.22 7.76 127.77 0.99 2.22 16 2 N -0.58 -18.04 3.09 -828.31 -2.56 -20.60 16 3 C 0.50 15.07 6.70 87.65 0.59 15.66 16 4 O -0.56 -20.21 14.77 -3.03 -0.04 -20.26 16 5 C 0.08 1.74 1.17 -10.53 -0.01 1.73 16 6 F -0.18 -4.11 14.44 44.97 0.65 -3.46 16 7 C -0.17 -3.26 6.52 31.61 0.21 -3.05 16 8 C 0.05 0.73 7.64 72.49 0.55 1.28 16 9 O -0.38 -7.62 11.65 -148.98 -1.74 -9.36 16 10 C 0.04 0.71 6.08 72.49 0.44 1.15 16 11 C 0.11 4.34 4.40 46.75 0.21 4.54 16 12 C 0.17 7.70 6.84 86.48 0.59 8.30 16 13 N -0.64 -32.45 3.70 -717.33 -2.65 -35.10 16 14 C -0.24 -13.45 10.70 84.03 0.90 -12.55 16 15 H 0.09 4.56 7.83 -2.91 -0.02 4.54 16 16 C -0.06 -3.34 5.50 84.86 0.47 -2.87 16 17 N -0.95 -56.32 11.51 21.65 0.25 -56.08 16 18 Si 0.98 45.10 29.56 68.60 2.03 47.13 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 21 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 22 C 0.11 4.62 8.46 86.48 0.73 5.35 16 23 H 0.08 1.62 8.12 -2.39 -0.02 1.60 16 24 H 0.08 1.99 6.36 -2.38 -0.02 1.98 16 25 H 0.11 2.10 4.88 -2.39 -0.01 2.09 16 26 H 0.11 1.78 8.06 -2.39 -0.02 1.76 16 27 H 0.10 2.30 6.51 -2.39 -0.02 2.29 16 28 H 0.13 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.66 7.86 -2.39 -0.02 1.65 16 31 H 0.13 2.08 7.55 -2.38 -0.02 2.06 16 32 H 0.10 4.26 7.24 -2.39 -0.02 4.24 16 33 H 0.04 1.84 6.71 -2.39 -0.02 1.82 16 34 H 0.04 2.09 7.35 -2.39 -0.02 2.07 16 35 H 0.25 14.43 8.31 -92.70 -0.77 13.66 16 36 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.06 2.12 6.97 -2.39 -0.02 2.11 16 Total: -1.00 -68.25 299.97 2.68 -65.57 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 1.08 Total: 10.40 kcal Atomic # 6 Polarization: 16.09 SS G_CDS: 5.66 Total: 21.75 kcal Atomic # 7 Polarization: -106.82 SS G_CDS: -4.96 Total: -111.78 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -1.78 Total: -29.62 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.65 Total: -3.46 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -68.25 2.68 -65.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043648667.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.334 kcal (2) G-P(sol) polarization free energy of solvation -68.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds