Wall clock time and date at job start Mon Mar 30 2020 01:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 119.99768 * 2 1 4 4 O 1.21278 * 119.99864 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99963 * 0.02562 * 3 2 1 6 6 F 1.39897 * 110.74851 * 307.97766 * 5 3 2 7 7 C 1.55566 * 110.83787 * 184.30619 * 5 3 2 8 8 C 1.54944 * 100.82489 * 207.68322 * 7 5 3 9 9 O 1.43645 * 105.22260 * 36.43849 * 8 7 5 10 10 C 1.43235 * 109.97529 * 335.52671 * 9 8 7 11 11 C 1.46490 * 120.00214 * 180.02562 * 2 1 3 12 12 C 1.53948 * 113.74380 * 38.74270 * 11 2 1 13 13 N 1.47811 * 86.03854 * 222.08518 * 12 11 2 14 14 C 1.36930 * 134.45772 * 204.64640 * 13 12 11 15 15 H 1.07998 * 120.00358 * 179.86103 * 14 13 12 16 16 C 1.38815 * 120.00244 * 359.85888 * 14 13 12 17 17 N 1.31623 * 119.99834 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00492 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46791 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47202 * 120.00380 * 18 16 14 21 21 H 1.48502 * 109.47267 * 240.00373 * 18 16 14 22 22 C 1.47586 * 91.05214 * 24.54494 * 13 12 11 23 23 H 1.09000 * 109.47089 * 89.99838 * 1 2 3 24 24 H 1.09005 * 109.47018 * 209.99960 * 1 2 3 25 25 H 1.09003 * 109.47309 * 329.99928 * 1 2 3 26 26 H 1.08997 * 111.22347 * 89.77761 * 7 5 3 27 27 H 1.09003 * 111.13190 * 325.54358 * 7 5 3 28 28 H 1.09002 * 110.30953 * 277.47426 * 8 7 5 29 29 H 1.09000 * 110.30834 * 155.40499 * 8 7 5 30 30 H 1.08995 * 109.83514 * 121.22466 * 10 9 8 31 31 H 1.09003 * 109.82666 * 242.20160 * 10 9 8 32 32 H 1.09002 * 112.94826 * 170.33141 * 11 2 1 33 33 H 1.08998 * 113.76576 * 336.34718 * 12 11 2 34 34 H 1.08996 * 113.77025 * 107.74334 * 12 11 2 35 35 H 0.96995 * 120.00278 * 179.97438 * 17 16 14 36 36 H 1.08993 * 113.77013 * 221.15419 * 22 13 12 37 37 H 1.08995 * 113.87024 * 89.76793 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4724 0.0006 6 9 0.4399 2.4993 -1.0303 7 6 2.3641 3.6766 -0.1087 8 6 1.5496 4.7799 0.6125 9 8 0.8689 4.1070 1.6836 10 6 0.7136 2.7184 1.3687 11 6 2.1975 -1.2686 -0.0006 12 6 1.5556 -2.3546 -0.8829 13 7 1.8611 -3.2880 0.2217 14 6 2.0640 -4.6395 0.3070 15 1 2.2810 -5.0938 1.2624 16 6 1.9907 -5.4257 -0.8347 17 7 1.7266 -4.8720 -1.9992 18 14 2.2668 -7.2695 -0.7184 19 1 2.5454 -7.6403 0.6924 20 1 1.0516 -7.9826 -1.1874 21 1 3.4235 -7.6514 -1.5677 22 6 1.8621 -2.1786 1.1951 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 2.5489 3.9416 -1.1497 27 1 3.2982 3.4724 0.4146 28 1 0.8288 5.2267 -0.0723 29 1 2.2173 5.5444 1.0097 30 1 1.1969 2.1096 2.1328 31 1 -0.3458 2.4687 1.3107 32 1 3.2669 -1.1418 -0.1691 33 1 0.4888 -2.2089 -1.0526 34 1 2.1091 -2.5602 -1.7991 35 1 1.6757 -5.4213 -2.7970 36 1 2.6599 -2.2439 1.9348 37 1 0.8864 -1.9797 1.6383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043648675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:37 Heat of formation + Delta-G solvation = -53.923337 kcal Electronic energy + Delta-G solvation = -21863.575499 eV Core-core repulsion = 18365.191261 eV Total energy + Delta-G solvation = -3498.384239 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.132 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.17961 -40.21298 -38.95944 -37.63352 -34.66917 -32.21829 -31.84841 -29.79599 -27.71371 -26.88083 -24.91226 -24.35678 -23.13172 -22.16810 -20.00682 -18.73503 -17.79049 -17.12252 -17.03377 -16.60903 -15.83602 -15.55705 -15.12861 -14.91317 -14.81135 -14.35090 -14.00995 -13.81358 -13.34641 -13.03290 -12.53791 -12.43452 -12.27292 -12.03180 -11.86308 -11.78320 -11.62796 -11.39265 -11.11797 -10.93524 -10.77161 -10.36266 -10.10619 -9.93316 -9.67694 -9.62154 -8.87396 -8.33089 -6.98570 -5.84612 -3.18069 2.36946 2.87093 3.35734 3.38868 3.41350 3.43747 3.67920 4.00819 4.24132 4.41954 4.48163 4.65099 4.84572 5.05753 5.13910 5.26302 5.36165 5.36545 5.38354 5.44235 5.50718 5.66011 5.76021 5.82010 5.98294 6.03796 6.33169 6.47060 6.49532 6.61115 7.10976 7.19916 7.42021 7.52745 7.88770 8.06063 8.96163 9.62431 10.47799 11.32614 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.049242 B = 0.004048 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.479382 B = 6914.539185 C = 6945.219349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.585 5.585 3 C 0.506 3.494 4 O -0.524 6.524 5 C 0.068 3.932 6 F -0.180 7.180 7 C -0.158 4.158 8 C 0.049 3.951 9 O -0.373 6.373 10 C 0.041 3.959 11 C 0.087 3.913 12 C 0.158 3.842 13 N -0.605 5.605 14 C -0.225 4.225 15 H 0.083 0.917 16 C -0.006 4.006 17 N -0.920 5.920 18 Si 0.915 3.085 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.289 1.289 22 C 0.109 3.891 23 H 0.065 0.935 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.101 0.899 27 H 0.112 0.888 28 H 0.068 0.932 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.118 0.882 33 H 0.034 0.966 34 H 0.078 0.922 35 H 0.255 0.745 36 H 0.049 0.951 37 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.259 17.472 4.223 18.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.316 5.316 3 C 0.290 3.710 4 O -0.400 6.400 5 C 0.045 3.955 6 F -0.160 7.160 7 C -0.196 4.196 8 C -0.027 4.027 9 O -0.293 6.293 10 C -0.036 4.036 11 C -0.016 4.016 12 C 0.032 3.968 13 N -0.332 5.332 14 C -0.352 4.352 15 H 0.101 0.899 16 C -0.202 4.202 17 N -0.567 5.567 18 Si 0.745 3.255 19 H -0.204 1.204 20 H -0.217 1.217 21 H -0.216 1.216 22 C -0.018 4.018 23 H 0.084 0.916 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.120 0.880 27 H 0.131 0.869 28 H 0.086 0.914 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.136 0.864 33 H 0.052 0.948 34 H 0.096 0.904 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.691 17.184 4.259 17.908 hybrid contribution -0.190 -1.201 -0.398 1.279 sum -2.881 15.984 3.861 16.694 Atomic orbital electron populations 1.22038 0.79306 1.03117 1.02895 1.48074 1.07365 1.06012 1.70185 1.20249 0.88074 0.84762 0.77962 1.90717 1.13034 1.86629 1.49657 1.22721 0.88684 0.96559 0.87487 1.92933 1.65514 1.97427 1.60167 1.23775 0.99419 0.91965 1.04486 1.23495 0.94944 0.95149 0.89083 1.88445 1.79201 1.19426 1.42189 1.23806 1.01580 0.84430 0.93803 1.24217 0.98093 0.79324 0.99997 1.22668 0.97015 0.83231 0.93919 1.45699 1.81958 1.02232 1.03276 1.19044 1.41657 0.80096 0.94433 0.89898 1.24814 1.01754 0.98362 0.95318 1.69820 1.54458 1.34316 0.98058 0.86005 0.77449 0.84602 0.77440 1.20369 1.21654 1.21582 1.22960 0.98200 0.87198 0.93402 0.91604 0.89841 0.91589 0.88013 0.86915 0.91367 0.88580 0.88897 0.88880 0.86442 0.94842 0.90357 0.93520 0.93307 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.91 7.96 59.85 0.48 1.38 16 2 N -0.59 -9.38 3.09 -175.74 -0.54 -9.92 16 3 C 0.51 7.94 6.69 -10.98 -0.07 7.87 16 4 O -0.52 -9.72 15.15 5.56 0.08 -9.64 16 5 C 0.07 0.83 0.96 -89.68 -0.09 0.75 16 6 F -0.18 -2.29 15.44 2.25 0.03 -2.25 16 7 C -0.16 -1.65 6.15 -24.34 -0.15 -1.80 16 8 C 0.05 0.44 7.77 38.18 0.30 0.74 16 9 O -0.37 -4.22 11.36 -35.23 -0.40 -4.62 16 10 C 0.04 0.44 6.19 37.88 0.23 0.68 16 11 C 0.09 1.69 4.40 -70.14 -0.31 1.38 16 12 C 0.16 3.64 6.97 -2.84 -0.02 3.63 16 13 N -0.61 -15.29 3.70 -177.87 -0.66 -15.95 16 14 C -0.22 -6.23 10.70 -15.06 -0.16 -6.40 16 15 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 16 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 17 N -0.92 -26.95 11.39 55.49 0.63 -26.32 16 18 Si 0.91 21.89 29.55 -169.99 -5.02 16.86 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 C 0.11 2.21 8.46 -2.96 -0.03 2.19 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.08 1.12 6.35 -51.93 -0.33 0.79 16 25 H 0.07 0.69 4.29 -51.93 -0.22 0.47 16 26 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.11 1.26 7.31 -51.93 -0.38 0.88 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.99 7.81 -51.93 -0.41 0.59 16 31 H 0.09 0.87 6.67 -51.93 -0.35 0.52 16 32 H 0.12 2.48 7.22 -51.93 -0.37 2.11 16 33 H 0.03 0.76 6.83 -51.93 -0.35 0.41 16 34 H 0.08 2.04 7.16 -51.93 -0.37 1.67 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.04 0.68 6.84 -51.93 -0.36 0.33 16 LS Contribution 300.09 15.07 4.52 4.52 Total: -1.00 -31.94 300.09 -6.07 -38.00 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.80 Total: -0.83 kcal Atomic # 6 Polarization: 10.06 SS G_CDS: 0.09 Total: 10.15 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: -0.57 Total: -52.19 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.32 Total: -14.26 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.03 Total: -2.25 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.94 -6.07 -38.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043648675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.923 kcal (2) G-P(sol) polarization free energy of solvation -31.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds