Wall clock time and date at job start Mon Mar 30 2020 01:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34783 * 119.99768 * 2 1 4 4 O 1.21278 * 119.99864 * 180.02562 * 3 2 1 5 5 C 1.50703 * 119.99963 * 0.02562 * 3 2 1 6 6 F 1.39897 * 110.74851 * 307.97766 * 5 3 2 7 7 C 1.55566 * 110.83787 * 184.30619 * 5 3 2 8 8 C 1.54944 * 100.82489 * 207.68322 * 7 5 3 9 9 O 1.43645 * 105.22260 * 36.43849 * 8 7 5 10 10 C 1.43235 * 109.97529 * 335.52671 * 9 8 7 11 11 C 1.46490 * 120.00214 * 180.02562 * 2 1 3 12 12 C 1.53948 * 113.74380 * 38.74270 * 11 2 1 13 13 N 1.47811 * 86.03854 * 222.08518 * 12 11 2 14 14 C 1.36930 * 134.45772 * 204.64640 * 13 12 11 15 15 H 1.07998 * 120.00358 * 179.86103 * 14 13 12 16 16 C 1.38815 * 120.00244 * 359.85888 * 14 13 12 17 17 N 1.31623 * 119.99834 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00492 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.46791 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47202 * 120.00380 * 18 16 14 21 21 H 1.48502 * 109.47267 * 240.00373 * 18 16 14 22 22 C 1.47586 * 91.05214 * 24.54494 * 13 12 11 23 23 H 1.09000 * 109.47089 * 89.99838 * 1 2 3 24 24 H 1.09005 * 109.47018 * 209.99960 * 1 2 3 25 25 H 1.09003 * 109.47309 * 329.99928 * 1 2 3 26 26 H 1.08997 * 111.22347 * 89.77761 * 7 5 3 27 27 H 1.09003 * 111.13190 * 325.54358 * 7 5 3 28 28 H 1.09002 * 110.30953 * 277.47426 * 8 7 5 29 29 H 1.09000 * 110.30834 * 155.40499 * 8 7 5 30 30 H 1.08995 * 109.83514 * 121.22466 * 10 9 8 31 31 H 1.09003 * 109.82666 * 242.20160 * 10 9 8 32 32 H 1.09002 * 112.94826 * 170.33141 * 11 2 1 33 33 H 1.08998 * 113.76576 * 336.34718 * 12 11 2 34 34 H 1.08996 * 113.77025 * 107.74334 * 12 11 2 35 35 H 0.96995 * 120.00278 * 179.97438 * 17 16 14 36 36 H 1.08993 * 113.77013 * 221.15419 * 22 13 12 37 37 H 1.08995 * 113.87024 * 89.76793 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3516 1.1673 -0.0005 5 6 1.3853 2.4724 0.0006 6 9 0.4399 2.4993 -1.0303 7 6 2.3641 3.6766 -0.1087 8 6 1.5496 4.7799 0.6125 9 8 0.8689 4.1070 1.6836 10 6 0.7136 2.7184 1.3687 11 6 2.1975 -1.2686 -0.0006 12 6 1.5556 -2.3546 -0.8829 13 7 1.8611 -3.2880 0.2217 14 6 2.0640 -4.6395 0.3070 15 1 2.2810 -5.0938 1.2624 16 6 1.9907 -5.4257 -0.8347 17 7 1.7266 -4.8720 -1.9992 18 14 2.2668 -7.2695 -0.7184 19 1 2.5454 -7.6403 0.6924 20 1 1.0516 -7.9826 -1.1874 21 1 3.4235 -7.6514 -1.5677 22 6 1.8621 -2.1786 1.1951 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3634 0.8900 0.5138 26 1 2.5489 3.9416 -1.1497 27 1 3.2982 3.4724 0.4146 28 1 0.8288 5.2267 -0.0723 29 1 2.2173 5.5444 1.0097 30 1 1.1969 2.1096 2.1328 31 1 -0.3458 2.4687 1.3107 32 1 3.2669 -1.1418 -0.1691 33 1 0.4888 -2.2089 -1.0526 34 1 2.1091 -2.5602 -1.7991 35 1 1.6757 -5.4213 -2.7970 36 1 2.6599 -2.2439 1.9348 37 1 0.8864 -1.9797 1.6383 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001043648675.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:36 Heat of formation + Delta-G solvation = -76.115093 kcal Electronic energy + Delta-G solvation = -21864.537806 eV Core-core repulsion = 18365.191261 eV Total energy + Delta-G solvation = -3499.346545 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 272.132 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.17724 -41.48955 -40.06185 -39.09027 -36.12808 -34.08690 -32.88931 -30.74761 -29.47965 -28.12408 -26.67802 -25.83319 -24.17645 -23.40622 -21.33773 -20.23867 -19.00016 -18.75700 -18.11217 -17.92786 -17.08029 -16.75903 -16.52141 -16.15411 -15.92642 -15.69909 -15.57363 -14.97423 -14.59571 -14.19594 -13.98825 -13.77908 -13.39099 -13.33090 -13.30738 -13.18547 -12.89157 -12.76211 -12.61110 -12.58102 -12.15833 -11.99050 -11.93150 -11.59318 -10.99765 -10.91602 -10.67420 -9.74261 -8.99785 -7.95353 -5.30022 1.12662 1.45264 1.46949 1.57082 1.62586 2.45186 2.56598 2.69758 3.07212 3.20498 3.27550 3.40281 3.59037 3.75782 3.85632 4.05320 4.15411 4.23638 4.30246 4.46152 4.52079 4.62219 4.68633 4.70201 4.76179 4.80793 4.87878 4.95716 5.09039 5.16829 5.43213 5.55401 5.73176 5.85366 6.17595 6.77239 6.86072 7.54782 8.46812 9.21928 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.049242 B = 0.004048 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.479382 B = 6914.539185 C = 6945.219349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.587 5.587 3 C 0.503 3.497 4 O -0.557 6.557 5 C 0.071 3.929 6 F -0.180 7.180 7 C -0.158 4.158 8 C 0.051 3.949 9 O -0.386 6.386 10 C 0.044 3.956 11 C 0.112 3.888 12 C 0.160 3.840 13 N -0.636 5.636 14 C -0.236 4.236 15 H 0.088 0.912 16 C -0.064 4.064 17 N -0.953 5.953 18 Si 0.982 3.018 19 H -0.264 1.264 20 H -0.290 1.290 21 H -0.293 1.293 22 C 0.117 3.883 23 H 0.066 0.934 24 H 0.082 0.918 25 H 0.097 0.903 26 H 0.110 0.890 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.039 0.961 34 H 0.039 0.961 35 H 0.250 0.750 36 H 0.056 0.944 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.166 18.719 5.473 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.317 5.317 3 C 0.289 3.711 4 O -0.435 6.435 5 C 0.049 3.951 6 F -0.161 7.161 7 C -0.196 4.196 8 C -0.024 4.024 9 O -0.306 6.306 10 C -0.033 4.033 11 C 0.007 3.993 12 C 0.034 3.966 13 N -0.363 5.363 14 C -0.364 4.364 15 H 0.106 0.894 16 C -0.257 4.257 17 N -0.602 5.602 18 Si 0.810 3.190 19 H -0.188 1.188 20 H -0.217 1.217 21 H -0.220 1.220 22 C -0.008 4.008 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.115 0.885 26 H 0.129 0.871 27 H 0.121 0.879 28 H 0.100 0.900 29 H 0.136 0.864 30 H 0.111 0.889 31 H 0.130 0.870 32 H 0.116 0.884 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.619 18.474 5.541 19.624 hybrid contribution 0.104 -1.500 -0.782 1.695 sum -3.515 16.974 4.760 17.976 Atomic orbital electron populations 1.22222 0.77218 1.04611 1.03441 1.48017 1.08511 1.04955 1.70246 1.20858 0.87905 0.85634 0.76708 1.90703 1.14688 1.87263 1.50853 1.22684 0.89062 0.94806 0.88555 1.92938 1.65451 1.97300 1.60392 1.23821 0.98852 0.91680 1.05290 1.23661 0.95258 0.94717 0.88770 1.88433 1.79555 1.19452 1.43125 1.23831 1.02441 0.84572 0.92418 1.23473 0.96965 0.80517 0.98333 1.22524 0.96869 0.84536 0.92654 1.46002 1.82319 1.02476 1.05472 1.19440 1.40680 0.81619 0.94670 0.89392 1.25659 1.02285 1.02707 0.95060 1.70006 1.56073 1.35573 0.98534 0.84963 0.76807 0.79339 0.77903 1.18779 1.21709 1.22012 1.23069 0.99604 0.85129 0.93044 0.91586 0.89975 0.88451 0.87137 0.87859 0.89968 0.86432 0.88865 0.87008 0.88418 0.94361 0.94239 0.94114 0.92612 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.61 7.96 127.77 1.02 2.63 16 2 N -0.59 -18.20 3.09 -828.29 -2.56 -20.76 16 3 C 0.50 15.29 6.69 87.66 0.59 15.88 16 4 O -0.56 -20.60 15.15 -3.02 -0.05 -20.65 16 5 C 0.07 1.60 0.96 -10.19 -0.01 1.59 16 6 F -0.18 -4.15 15.44 44.97 0.69 -3.45 16 7 C -0.16 -3.00 6.15 32.14 0.20 -2.80 16 8 C 0.05 0.77 7.77 72.65 0.56 1.33 16 9 O -0.39 -7.57 11.36 -148.98 -1.69 -9.27 16 10 C 0.04 0.83 6.19 72.45 0.45 1.28 16 11 C 0.11 4.37 4.40 46.75 0.21 4.57 16 12 C 0.16 7.57 6.97 86.44 0.60 8.18 16 13 N -0.64 -32.32 3.70 -716.65 -2.65 -34.98 16 14 C -0.24 -13.14 10.70 84.04 0.90 -12.24 16 15 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 16 C -0.06 -3.62 5.50 84.86 0.47 -3.15 16 17 N -0.95 -57.28 11.39 21.65 0.25 -57.04 16 18 Si 0.98 45.37 29.55 68.60 2.03 47.39 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 22 C 0.12 4.63 8.46 86.49 0.73 5.36 16 23 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 24 H 0.08 2.03 6.35 -2.38 -0.02 2.02 16 25 H 0.10 1.73 4.29 -2.39 -0.01 1.72 16 26 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.10 2.18 7.31 -2.39 -0.02 2.16 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.09 1.75 7.81 -2.39 -0.02 1.73 16 31 H 0.11 1.66 6.67 -2.39 -0.02 1.64 16 32 H 0.10 4.24 7.22 -2.39 -0.02 4.22 16 33 H 0.04 1.76 6.83 -2.39 -0.02 1.74 16 34 H 0.04 2.16 7.16 -2.39 -0.02 2.14 16 35 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 36 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.06 2.20 6.84 -2.39 -0.02 2.18 16 Total: -1.00 -69.36 300.09 2.81 -66.55 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.09 Total: 9.58 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 5.71 Total: 22.62 kcal Atomic # 7 Polarization: -107.81 SS G_CDS: -4.97 Total: -112.78 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -1.74 Total: -29.91 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.69 Total: -3.45 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -69.36 2.81 -66.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043648675.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.566 kcal (2) G-P(sol) polarization free energy of solvation -69.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds