Wall clock time and date at job start Mon Mar 30 2020 01:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09005 * 109.47140 * 316.26755 * 3 2 1 5 5 N 1.46506 * 109.47146 * 196.27220 * 3 2 1 6 6 C 1.34773 * 119.99969 * 84.71992 * 5 3 2 7 7 O 1.21586 * 120.00012 * 0.02562 * 6 5 3 8 8 N 1.34774 * 119.99940 * 180.02562 * 6 5 3 9 9 C 1.46498 * 120.00211 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47428 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.47327 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99793 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00024 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00107 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47229 * 89.99835 * 15 13 11 17 17 H 1.48496 * 109.47201 * 210.00126 * 15 13 11 18 18 H 1.48501 * 109.47274 * 330.00047 * 15 13 11 19 19 C 1.50694 * 109.47538 * 76.27166 * 3 2 1 20 20 C 1.38239 * 120.00333 * 79.72312 * 19 3 2 21 21 C 1.38231 * 120.00426 * 179.81530 * 20 19 3 22 22 C 1.38241 * 119.99560 * 0.39510 * 21 20 19 23 23 C 1.38229 * 120.00141 * 359.86045 * 22 21 20 24 24 C 1.38233 * 120.00197 * 260.00370 * 19 3 2 25 25 H 4.18736 * 15.03948 * 359.97438 * 4 2 1 26 26 H 0.97005 * 119.99811 * 265.00044 * 5 3 2 27 27 H 0.97004 * 120.00041 * 359.97438 * 8 6 5 28 28 H 1.08998 * 109.47182 * 299.99924 * 9 8 6 29 29 H 1.09001 * 109.47115 * 59.99869 * 9 8 6 30 30 H 1.08998 * 109.47065 * 300.00226 * 10 9 8 31 31 H 1.09001 * 109.46892 * 59.99962 * 10 9 8 32 32 H 0.97000 * 120.00440 * 179.97438 * 14 13 11 33 33 H 1.08002 * 119.99696 * 0.02562 * 20 19 3 34 34 H 1.07996 * 120.00413 * 180.23027 * 21 20 19 35 35 H 1.08006 * 119.99761 * 179.83510 * 22 21 20 36 36 H 1.08003 * 119.99865 * 179.97438 * 23 22 21 37 37 H 1.08006 * 119.99965 * 359.97038 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.7418 0.7104 5 7 3.1337 1.3268 0.3870 6 6 3.2570 1.6454 1.6907 7 8 2.9638 0.8322 2.5457 8 7 3.7052 2.8656 2.0468 9 6 3.8397 3.2118 3.4639 10 6 4.3646 4.6433 3.5917 11 6 4.5023 4.9996 5.0494 12 1 4.2419 4.2772 5.8089 13 6 4.9608 6.2479 5.4136 14 7 5.2774 7.1278 4.4889 15 14 5.1322 6.6894 7.2206 16 1 6.4925 6.3255 7.6922 17 1 4.9214 8.1488 7.3957 18 1 4.1189 5.9446 8.0104 19 6 3.1485 -0.3363 -1.3801 20 6 3.1772 0.6365 -2.3619 21 6 3.6418 0.3284 -3.6269 22 6 4.0701 -0.9546 -3.9123 23 6 4.0365 -1.9287 -2.9321 24 6 3.5755 -1.6195 -1.6661 25 1 -1.0500 -0.0002 0.0008 26 1 3.3641 1.9769 -0.2951 27 1 3.9394 3.5143 1.3647 28 1 2.8671 3.1364 3.9502 29 1 4.5387 2.5249 3.9410 30 1 5.3372 4.7184 3.1054 31 1 3.6658 5.3304 3.1145 32 1 5.5995 8.0061 4.7451 33 1 2.8398 1.6381 -2.1397 34 1 3.6677 1.0893 -4.3928 35 1 4.4306 -1.1961 -4.9014 36 1 4.3707 -2.9311 -3.1553 37 1 3.5493 -2.3806 -0.9002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118186959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:10 Heat of formation + Delta-G solvation = 43.642399 kcal Electronic energy + Delta-G solvation = -19179.385236 eV Core-core repulsion = 16116.000990 eV Total energy + Delta-G solvation = -3063.384246 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.21425 -39.11742 -35.93743 -34.64502 -32.96761 -32.34891 -31.37165 -31.11126 -29.41007 -26.58176 -24.50599 -22.99136 -21.91391 -21.09323 -20.57811 -18.50074 -18.35816 -17.04726 -16.40629 -15.99826 -15.43233 -15.40642 -14.89482 -14.50044 -14.34666 -14.02224 -13.71590 -13.58550 -13.18955 -13.05301 -12.68328 -12.27132 -11.70399 -11.36323 -11.17771 -11.02646 -10.67719 -10.61940 -10.32879 -10.25896 -9.94482 -9.55436 -9.27999 -9.25382 -9.20545 -9.09763 -8.49089 -8.27685 -6.08053 -4.10604 0.98043 1.10796 2.46013 2.79182 3.30636 3.31116 3.36925 3.41665 3.45859 3.59703 4.27625 4.41803 4.56299 4.58784 4.70077 4.73269 4.84378 5.16283 5.21323 5.29120 5.42504 5.62524 5.73791 5.87280 6.13316 6.19399 6.21425 6.30208 6.41032 6.51511 6.66726 6.78648 6.99107 7.18363 7.56760 7.58025 7.64601 7.91146 8.26155 8.40371 8.92592 8.97805 9.54089 11.03649 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030805 B = 0.003023 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.718609 B = 9260.401688 C = 9682.517490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.192 4.192 3 C 0.318 3.682 4 H 0.117 0.883 5 N -0.744 5.744 6 C 0.701 3.299 7 O -0.593 6.593 8 N -0.736 5.736 9 C 0.140 3.860 10 C 0.013 3.987 11 C -0.520 4.520 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C -0.087 4.087 20 C -0.106 4.106 21 C -0.117 4.117 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.101 4.101 25 H 0.217 0.783 26 H 0.396 0.604 27 H 0.394 0.606 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.022 0.978 31 H 0.022 0.978 32 H 0.262 0.738 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.125 0.875 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.251 -14.899 -18.509 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.193 4.193 3 C 0.212 3.788 4 H 0.134 0.866 5 N -0.401 5.401 6 C 0.401 3.599 7 O -0.471 6.471 8 N -0.389 5.389 9 C 0.017 3.983 10 C -0.025 4.025 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.087 4.087 20 C -0.125 4.125 21 C -0.135 4.135 22 C -0.136 4.136 23 C -0.136 4.136 24 C -0.120 4.120 25 H 0.234 0.766 26 H 0.232 0.768 27 H 0.227 0.773 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.415 -15.434 -17.667 23.871 hybrid contribution 0.096 1.043 0.271 1.082 sum -4.318 -14.392 -17.395 22.986 Atomic orbital electron populations 1.24894 0.95817 0.98854 1.00695 1.23272 0.94378 1.01423 1.00249 1.16171 0.83211 0.86284 0.93091 0.86580 1.45235 1.72374 1.15834 1.06614 1.16038 0.78470 0.83251 0.82163 1.90898 1.57126 1.49828 1.49221 1.45526 1.69616 1.13202 1.10577 1.21615 1.00480 0.99180 0.77000 1.19327 0.96582 0.88619 0.97930 1.21055 1.44228 0.99013 0.91615 0.92204 1.24994 0.95211 0.96330 0.97778 1.69956 1.44580 1.06123 1.32713 0.86507 0.78575 0.77507 0.84939 1.20558 1.21191 1.19717 1.19713 1.00087 0.94682 0.94254 1.20971 0.99292 0.99168 0.93020 1.21147 0.98922 0.96867 0.96581 1.21215 0.99557 0.93405 0.99381 1.21144 0.99745 0.99590 0.93121 1.21029 0.98026 0.95626 0.97306 0.76569 0.76833 0.77339 0.92731 0.92684 0.95938 0.95966 0.92869 0.85931 0.85734 0.85944 0.85715 0.85478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 19.25 29.55 0.57 -1.67 16 2 C -0.19 -2.61 12.80 -37.12 -0.48 -3.08 16 3 C 0.32 4.08 2.61 -71.87 -0.19 3.89 16 4 H 0.12 1.61 7.45 -51.93 -0.39 1.22 16 5 N -0.74 -10.14 5.00 -62.60 -0.31 -10.46 16 6 C 0.70 12.66 8.51 -86.92 -0.74 11.92 16 7 O -0.59 -13.01 16.01 5.29 0.08 -12.92 16 8 N -0.74 -13.31 5.56 -65.23 -0.36 -13.67 16 9 C 0.14 3.05 5.61 -4.04 -0.02 3.03 16 10 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 11 C -0.52 -14.56 9.11 -34.44 -0.31 -14.87 16 12 H 0.06 1.64 7.74 -52.48 -0.41 1.24 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.25 13.29 55.43 0.74 -25.51 16 15 Si 0.90 21.51 29.54 -169.99 -5.02 16.49 16 16 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 C -0.09 -0.91 4.92 -104.63 -0.51 -1.43 16 20 C -0.11 -0.99 9.04 -39.58 -0.36 -1.35 16 21 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 22 C -0.12 -0.90 10.05 -39.58 -0.40 -1.29 16 23 C -0.12 -0.94 10.05 -39.59 -0.40 -1.34 16 24 C -0.10 -0.94 9.67 -39.58 -0.38 -1.32 16 25 H 0.22 1.81 7.80 -54.09 -0.42 1.39 16 26 H 0.40 4.32 6.90 -40.82 -0.28 4.04 16 27 H 0.39 6.09 8.49 -40.82 -0.35 5.74 16 28 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 30 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.12 1.02 6.93 -52.49 -0.36 0.66 16 34 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 36 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 37 H 0.13 1.01 8.04 -52.48 -0.42 0.59 16 LS Contribution 331.32 15.07 4.99 4.99 Total: -1.00 -33.74 331.32 -8.46 -42.20 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: -4.72 Total: 5.99 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -3.86 Total: -7.11 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: 0.06 Total: -49.64 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -33.74 -8.46 -42.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118186959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.844 kcal (2) G-P(sol) polarization free energy of solvation -33.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds