Wall clock time and date at job start Mon Mar 30 2020 01:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 H 1.09005 * 109.47140 * 316.26755 * 3 2 1 5 5 N 1.46506 * 109.47146 * 196.27220 * 3 2 1 6 6 C 1.34773 * 119.99969 * 84.71992 * 5 3 2 7 7 O 1.21586 * 120.00012 * 0.02562 * 6 5 3 8 8 N 1.34774 * 119.99940 * 180.02562 * 6 5 3 9 9 C 1.46498 * 120.00211 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47428 * 179.97438 * 9 8 6 11 11 C 1.50702 * 109.47327 * 179.97438 * 10 9 8 12 12 H 1.08004 * 119.99793 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00024 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00107 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47229 * 89.99835 * 15 13 11 17 17 H 1.48496 * 109.47201 * 210.00126 * 15 13 11 18 18 H 1.48501 * 109.47274 * 330.00047 * 15 13 11 19 19 C 1.50694 * 109.47538 * 76.27166 * 3 2 1 20 20 C 1.38239 * 120.00333 * 79.72312 * 19 3 2 21 21 C 1.38231 * 120.00426 * 179.81530 * 20 19 3 22 22 C 1.38241 * 119.99560 * 0.39510 * 21 20 19 23 23 C 1.38229 * 120.00141 * 359.86045 * 22 21 20 24 24 C 1.38233 * 120.00197 * 260.00370 * 19 3 2 25 25 H 4.18736 * 15.03948 * 359.97438 * 4 2 1 26 26 H 0.97005 * 119.99811 * 265.00044 * 5 3 2 27 27 H 0.97004 * 120.00041 * 359.97438 * 8 6 5 28 28 H 1.08998 * 109.47182 * 299.99924 * 9 8 6 29 29 H 1.09001 * 109.47115 * 59.99869 * 9 8 6 30 30 H 1.08998 * 109.47065 * 300.00226 * 10 9 8 31 31 H 1.09001 * 109.46892 * 59.99962 * 10 9 8 32 32 H 0.97000 * 120.00440 * 179.97438 * 14 13 11 33 33 H 1.08002 * 119.99696 * 0.02562 * 20 19 3 34 34 H 1.07996 * 120.00413 * 180.23027 * 21 20 19 35 35 H 1.08006 * 119.99761 * 179.83510 * 22 21 20 36 36 H 1.08003 * 119.99865 * 179.97438 * 23 22 21 37 37 H 1.08006 * 119.99965 * 359.97038 * 24 19 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0097 -0.7418 0.7104 5 7 3.1337 1.3268 0.3870 6 6 3.2570 1.6454 1.6907 7 8 2.9638 0.8322 2.5457 8 7 3.7052 2.8656 2.0468 9 6 3.8397 3.2118 3.4639 10 6 4.3646 4.6433 3.5917 11 6 4.5023 4.9996 5.0494 12 1 4.2419 4.2772 5.8089 13 6 4.9608 6.2479 5.4136 14 7 5.2774 7.1278 4.4889 15 14 5.1322 6.6894 7.2206 16 1 6.4925 6.3255 7.6922 17 1 4.9214 8.1488 7.3957 18 1 4.1189 5.9446 8.0104 19 6 3.1485 -0.3363 -1.3801 20 6 3.1772 0.6365 -2.3619 21 6 3.6418 0.3284 -3.6269 22 6 4.0701 -0.9546 -3.9123 23 6 4.0365 -1.9287 -2.9321 24 6 3.5755 -1.6195 -1.6661 25 1 -1.0500 -0.0002 0.0008 26 1 3.3641 1.9769 -0.2951 27 1 3.9394 3.5143 1.3647 28 1 2.8671 3.1364 3.9502 29 1 4.5387 2.5249 3.9410 30 1 5.3372 4.7184 3.1054 31 1 3.6658 5.3304 3.1145 32 1 5.5995 8.0061 4.7451 33 1 2.8398 1.6381 -2.1397 34 1 3.6677 1.0893 -4.3928 35 1 4.4306 -1.1961 -4.9014 36 1 4.3707 -2.9311 -3.1553 37 1 3.5493 -2.3806 -0.9002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118186959.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:09 Heat of formation + Delta-G solvation = 22.131877 kcal Electronic energy + Delta-G solvation = -19180.318003 eV Core-core repulsion = 16116.000990 eV Total energy + Delta-G solvation = -3064.317012 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.37322 -40.11201 -37.14805 -36.29083 -34.86493 -33.59711 -32.23500 -31.82856 -31.13788 -27.71918 -26.33860 -23.74031 -22.98468 -22.57965 -22.02094 -19.74118 -19.41552 -18.43969 -17.96976 -17.10109 -16.73492 -16.50776 -16.13073 -15.95779 -15.67912 -15.20651 -15.11386 -14.57679 -14.27739 -14.26314 -14.08324 -13.46688 -13.21458 -12.94315 -12.52497 -12.39330 -12.24057 -11.98523 -11.78196 -11.65610 -11.47420 -11.22452 -11.19255 -10.63014 -10.56658 -9.89043 -9.85064 -9.78355 -8.23717 -6.33955 0.29272 0.46905 1.33218 1.42871 1.42953 1.54691 1.81950 2.05906 2.15485 2.42358 2.82587 3.11158 3.26599 3.52254 3.72891 3.91430 4.11335 4.28627 4.32620 4.47105 4.51575 4.59851 4.69744 4.85996 4.94630 5.02726 5.10664 5.24848 5.29761 5.49328 5.52378 5.59379 5.59923 5.60671 5.78107 5.94113 6.05618 6.17132 6.60472 6.79045 7.02963 7.35270 7.50797 8.88264 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030805 B = 0.003023 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.718609 B = 9260.401688 C = 9682.517490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.234 4.234 3 C 0.319 3.681 4 H 0.099 0.901 5 N -0.724 5.724 6 C 0.702 3.298 7 O -0.633 6.633 8 N -0.730 5.730 9 C 0.160 3.840 10 C 0.024 3.976 11 C -0.547 4.547 12 H 0.059 0.941 13 C 0.007 3.993 14 N -0.926 5.926 15 Si 0.965 3.035 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.267 1.267 19 C -0.101 4.101 20 C -0.117 4.117 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.115 4.115 25 H 0.250 0.750 26 H 0.411 0.589 27 H 0.407 0.593 28 H 0.043 0.957 29 H 0.045 0.955 30 H 0.010 0.990 31 H 0.009 0.991 32 H 0.266 0.734 33 H 0.128 0.872 34 H 0.146 0.854 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.384 -15.268 -19.636 25.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.235 4.235 3 C 0.214 3.786 4 H 0.116 0.884 5 N -0.381 5.381 6 C 0.401 3.599 7 O -0.514 6.514 8 N -0.385 5.385 9 C 0.036 3.964 10 C -0.013 4.013 11 C -0.585 4.585 12 H 0.077 0.923 13 C -0.191 4.191 14 N -0.566 5.566 15 Si 0.790 3.210 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.191 1.191 19 C -0.102 4.102 20 C -0.136 4.136 21 C -0.139 4.139 22 C -0.135 4.135 23 C -0.138 4.138 24 C -0.133 4.133 25 H 0.266 0.734 26 H 0.249 0.751 27 H 0.243 0.757 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.028 0.972 31 H 0.027 0.973 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.164 0.836 35 H 0.166 0.834 36 H 0.165 0.835 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.545 -15.803 -18.860 25.022 hybrid contribution 0.105 1.108 0.515 1.226 sum -4.440 -14.695 -18.345 23.921 Atomic orbital electron populations 1.25772 0.96763 0.97098 0.99308 1.23653 0.95172 1.03048 1.01654 1.16184 0.83348 0.84885 0.94214 0.88363 1.45055 1.71135 1.16719 1.05218 1.16113 0.78049 0.82531 0.83161 1.90867 1.58823 1.50914 1.50812 1.45210 1.69900 1.13865 1.09496 1.21106 0.99271 0.97002 0.79003 1.19126 0.95564 0.90074 0.96547 1.21464 1.44566 0.99485 0.92995 0.92291 1.25864 0.94664 0.96178 1.02439 1.70056 1.45107 1.06572 1.34864 0.85442 0.78843 0.77400 0.79349 1.19720 1.20481 1.19109 1.19594 1.01668 0.95718 0.93205 1.21112 0.99758 0.99216 0.93490 1.21450 0.98228 0.97800 0.96432 1.21595 0.98495 0.93017 1.00431 1.21452 0.99019 1.00896 0.92473 1.21216 0.98369 0.95395 0.98365 0.73398 0.75120 0.75712 0.93861 0.93619 0.97184 0.97298 0.92529 0.85438 0.83638 0.83375 0.83476 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.98 19.25 74.32 1.43 -2.55 16 2 C -0.23 -6.34 12.80 31.12 0.40 -5.94 16 3 C 0.32 8.31 2.61 42.44 0.11 8.42 16 4 H 0.10 2.87 7.45 -2.38 -0.02 2.85 16 5 N -0.72 -19.80 5.00 -470.24 -2.35 -22.15 16 6 C 0.70 25.64 8.51 179.06 1.52 27.16 16 7 O -0.63 -28.42 16.01 -3.99 -0.06 -28.49 16 8 N -0.73 -26.61 5.56 -478.54 -2.66 -29.27 16 9 C 0.16 7.13 5.61 86.38 0.48 7.61 16 10 C 0.02 1.25 5.09 29.85 0.15 1.40 16 11 C -0.55 -30.86 9.11 25.60 0.23 -30.62 16 12 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 13 C 0.01 0.41 5.46 84.65 0.46 0.87 16 14 N -0.93 -54.50 13.29 21.45 0.28 -54.22 16 15 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 19 C -0.10 -2.09 4.92 -19.87 -0.10 -2.19 16 20 C -0.12 -2.07 9.04 22.27 0.20 -1.87 16 21 C -0.12 -1.71 10.05 22.27 0.22 -1.48 16 22 C -0.12 -1.49 10.05 22.27 0.22 -1.27 16 23 C -0.12 -1.69 10.05 22.27 0.22 -1.46 16 24 C -0.12 -2.07 9.67 22.27 0.22 -1.85 16 25 H 0.25 3.60 7.80 -4.42 -0.03 3.56 16 26 H 0.41 8.75 6.90 -92.70 -0.64 8.11 16 27 H 0.41 12.53 8.49 -92.71 -0.79 11.74 16 28 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 33 H 0.13 1.99 6.93 -2.91 -0.02 1.97 16 34 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 35 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.15 1.32 8.06 -2.91 -0.02 1.29 16 37 H 0.13 2.11 8.04 -2.91 -0.02 2.08 16 Total: -1.00 -72.41 331.32 2.68 -69.73 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.34 Total: 22.23 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: 5.79 Total: -3.76 kcal Atomic # 7 Polarization: -100.91 SS G_CDS: -4.73 Total: -105.63 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.06 Total: -28.49 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -72.41 2.68 -69.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118186959.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.860 kcal (2) G-P(sol) polarization free energy of solvation -72.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds