Wall clock time and date at job start Mon Mar 30 2020 02:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 120.00283 * 2 1 4 4 H 1.48505 * 109.47377 * 269.99752 * 3 2 1 5 5 H 1.48501 * 109.47138 * 30.00064 * 3 2 1 6 6 H 1.48504 * 109.47441 * 149.99876 * 3 2 1 7 7 C 1.38803 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99755 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99997 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99905 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47199 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99551 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99972 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47171 * 179.97438 * 14 13 11 16 16 N 1.46906 * 109.47020 * 179.97438 * 15 14 13 17 17 C 1.46902 * 110.99573 * 179.97438 * 16 15 14 18 18 C 1.53008 * 109.46622 * 179.97438 * 17 16 15 19 19 C 1.53786 * 113.61376 * 274.13482 * 18 17 16 20 20 C 1.53956 * 87.01734 * 220.04986 * 19 18 17 21 21 C 1.53778 * 87.11368 * 25.36539 * 20 19 18 22 22 H 0.97001 * 119.99718 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47122 * 60.00098 * 10 9 7 24 24 H 1.09000 * 109.47045 * 299.99821 * 10 9 7 25 25 H 0.97001 * 120.00062 * 0.02562 * 13 11 10 26 26 H 1.08995 * 109.47879 * 59.99278 * 14 13 11 27 27 H 1.09008 * 109.46699 * 299.99828 * 14 13 11 28 28 H 1.09002 * 109.47142 * 59.99877 * 15 14 13 29 29 H 1.09000 * 109.46991 * 299.99621 * 15 14 13 30 30 H 1.00896 * 111.00309 * 56.04370 * 16 15 14 31 31 H 1.08990 * 109.47358 * 299.99539 * 17 16 15 32 32 H 1.09004 * 109.47457 * 60.00221 * 17 16 15 33 33 H 1.08994 * 112.85237 * 45.33193 * 18 17 16 34 34 H 1.09000 * 113.61298 * 334.56770 * 19 18 17 35 35 H 1.08998 * 113.60893 * 105.47080 * 19 18 17 36 36 H 1.08998 * 113.54123 * 270.81009 * 20 19 18 37 37 H 1.09003 * 113.66415 * 139.93411 * 20 19 18 38 38 H 1.08998 * 113.61648 * 220.08766 * 21 20 19 39 39 H 1.09002 * 113.69005 * 89.19419 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5730 -3.2328 0.0026 12 8 6.3440 -2.2965 0.0024 13 7 6.0456 -4.4949 0.0030 14 6 7.4905 -4.7361 0.0037 15 6 7.7561 -6.2428 0.0047 16 7 9.2052 -6.4846 0.0048 17 6 9.4986 -7.9240 0.0063 18 6 11.0140 -8.1354 0.0057 19 6 11.6373 -8.1216 -1.4001 20 6 12.5321 -9.2818 -0.9272 21 6 11.4298 -9.6135 0.0925 22 1 -0.4850 0.8401 0.0004 23 1 3.6439 -3.4323 -0.8873 24 1 3.6432 -3.4311 0.8927 25 1 5.4289 -5.2437 0.0029 26 1 7.9332 -4.2889 0.8937 27 1 7.9338 -4.2891 -0.8862 28 1 7.3135 -6.6904 -0.8852 29 1 7.3129 -6.6893 0.8948 30 1 9.6485 -6.0246 0.7857 31 1 9.0680 -8.3816 0.8968 32 1 9.0676 -8.3837 -0.8831 33 1 11.5312 -7.4938 0.7189 34 1 10.9401 -8.4018 -2.1897 35 1 12.1878 -7.2080 -1.6246 36 1 13.4654 -8.9533 -0.4699 37 1 12.6781 -10.0566 -1.6798 38 1 11.8129 -9.9025 1.0711 39 1 10.6751 -10.3023 -0.2870 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123792075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:56 Heat of formation + Delta-G solvation = -29.617269 kcal Electronic energy + Delta-G solvation = -17557.227326 eV Core-core repulsion = 14626.110253 eV Total energy + Delta-G solvation = -2931.117072 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.47064 -39.18679 -36.54840 -34.18065 -32.43401 -30.59762 -28.80141 -26.29386 -25.89234 -25.56785 -22.60500 -22.40502 -20.46212 -19.75634 -17.87652 -16.60045 -16.39503 -16.21600 -15.78081 -15.41375 -15.03110 -14.95469 -14.40163 -13.92923 -13.78965 -13.60238 -13.19339 -12.81262 -12.79154 -12.44911 -12.25783 -11.93062 -11.80882 -11.48710 -11.26122 -11.00105 -10.94410 -10.64844 -10.60947 -10.53770 -9.85288 -9.53660 -9.01796 -8.95984 -8.81739 -8.49492 -6.91308 -6.28517 -4.00211 2.74027 2.98555 3.22851 3.34094 3.51371 3.58064 3.94544 4.24565 4.31049 4.33838 4.42959 4.55224 4.63391 4.76132 4.85117 5.02523 5.05108 5.10547 5.20819 5.22533 5.32752 5.33999 5.37675 5.50233 5.54863 5.68980 5.71016 5.79365 5.84937 5.89415 6.01542 6.11446 6.47748 6.61361 6.96715 7.60147 7.94548 8.41945 8.49534 9.17686 10.80660 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.071467 B = 0.002321 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.693854 B =12061.525037 C =12310.163584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.124 4.124 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.737 5.737 14 C 0.123 3.877 15 C 0.049 3.951 16 N -0.685 5.685 17 C 0.070 3.930 18 C -0.109 4.109 19 C -0.127 4.127 20 C -0.146 4.146 21 C -0.137 4.137 22 H 0.271 0.729 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.399 0.601 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.343 0.657 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.764 -20.023 0.325 28.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.114 4.114 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.275 4.275 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.392 5.392 14 C -0.002 4.002 15 C -0.081 4.081 16 N -0.316 5.316 17 C -0.060 4.060 18 C -0.128 4.128 19 C -0.164 4.164 20 C -0.184 4.184 21 C -0.175 4.175 22 H 0.081 0.919 23 H 0.115 0.885 24 H 0.115 0.885 25 H 0.233 0.767 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.054 0.946 30 H 0.161 0.839 31 H 0.049 0.951 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 21.944 -18.288 -0.360 28.568 hybrid contribution -1.387 -0.969 0.915 1.923 sum 20.557 -19.258 0.555 28.174 Atomic orbital electron populations 1.69942 1.05908 1.27757 1.48087 1.24720 0.94467 0.98990 0.93183 0.86727 0.81886 0.83236 0.79951 1.19190 1.19952 1.15918 1.22321 0.88283 0.97541 1.58767 0.89384 1.84800 1.09256 1.00072 1.97426 1.23279 0.93966 1.04389 1.05819 1.20268 0.90594 0.82202 0.75271 1.90706 1.58788 1.42168 1.47609 1.45861 1.07367 1.08134 1.77847 1.21153 0.81387 0.94642 1.02977 1.22097 0.89006 0.95717 1.01252 1.60321 1.09574 1.11300 1.50420 1.21987 0.95335 0.88055 1.00575 1.22547 0.94798 0.96808 0.98607 1.22898 0.98597 0.98525 0.96407 1.22874 0.97525 0.98953 0.99021 1.22927 0.98711 0.96212 0.99668 0.91950 0.88458 0.88464 0.76746 0.91803 0.90631 0.90317 0.94587 0.83877 0.95125 0.90794 0.89229 0.90130 0.91366 0.90329 0.91564 0.91606 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.63 13.97 55.49 0.78 -25.85 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.90 27.74 -169.99 -4.71 17.18 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 7 C -0.52 -15.09 10.04 30.94 0.31 -14.78 16 8 H 0.09 2.65 8.03 -52.49 -0.42 2.22 16 9 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 10 C -0.12 -2.40 6.16 36.01 0.22 -2.18 16 11 C 0.53 9.51 7.85 -10.98 -0.09 9.42 16 12 O -0.52 -11.37 15.86 5.55 0.09 -11.28 16 13 N -0.74 -9.35 5.56 -60.29 -0.33 -9.68 16 14 C 0.12 1.38 5.93 -4.05 -0.02 1.36 16 15 C 0.05 0.40 5.80 -3.82 -0.02 0.38 16 16 N -0.68 -5.38 6.50 -113.77 -0.74 -6.12 16 17 C 0.07 0.47 5.51 -3.82 -0.02 0.45 16 18 C -0.11 -0.67 3.89 -89.80 -0.35 -1.02 16 19 C -0.13 -0.82 7.65 -25.82 -0.20 -1.02 16 20 C -0.15 -0.81 8.09 -25.83 -0.21 -1.02 16 21 C -0.14 -0.75 7.65 -25.92 -0.20 -0.95 16 22 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.10 1.75 8.14 -51.92 -0.42 1.32 16 24 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 25 H 0.40 3.84 8.47 -40.82 -0.35 3.49 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.97 8.14 -51.92 -0.42 0.55 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.34 2.48 8.73 -39.29 -0.34 2.14 16 31 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.07 0.51 7.87 -51.93 -0.41 0.10 16 33 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.08 0.54 7.92 -51.93 -0.41 0.13 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.42 8.10 -51.93 -0.42 0.00 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -33.45 338.32 -9.07 -42.52 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: -6.58 Total: 0.42 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -0.67 Total: -6.67 kcal Atomic # 7 Polarization: -41.35 SS G_CDS: -0.30 Total: -41.65 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.45 -9.07 -42.52 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.901 kcal (2) G-P(sol) polarization free energy of solvation -33.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds