Wall clock time and date at job start Mon Mar 30 2020 02:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86796 * 120.00283 * 2 1 4 4 H 1.48505 * 109.47377 * 269.99752 * 3 2 1 5 5 H 1.48501 * 109.47138 * 30.00064 * 3 2 1 6 6 H 1.48504 * 109.47441 * 149.99876 * 3 2 1 7 7 C 1.38803 * 119.99819 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99755 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99997 * 180.02562 * 7 2 1 10 10 C 1.81003 * 99.99905 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.47199 * 179.97438 * 10 9 7 12 12 O 1.21284 * 119.99551 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99972 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47171 * 179.97438 * 14 13 11 16 16 N 1.46906 * 109.47020 * 179.97438 * 15 14 13 17 17 C 1.46902 * 110.99573 * 179.97438 * 16 15 14 18 18 C 1.53008 * 109.46622 * 179.97438 * 17 16 15 19 19 C 1.53786 * 113.61376 * 274.13482 * 18 17 16 20 20 C 1.53956 * 87.01734 * 220.04986 * 19 18 17 21 21 C 1.53778 * 87.11368 * 25.36539 * 20 19 18 22 22 H 0.97001 * 119.99718 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47122 * 60.00098 * 10 9 7 24 24 H 1.09000 * 109.47045 * 299.99821 * 10 9 7 25 25 H 0.97001 * 120.00062 * 0.02562 * 13 11 10 26 26 H 1.08995 * 109.47879 * 59.99278 * 14 13 11 27 27 H 1.09008 * 109.46699 * 299.99828 * 14 13 11 28 28 H 1.09002 * 109.47142 * 59.99877 * 15 14 13 29 29 H 1.09000 * 109.46991 * 299.99621 * 15 14 13 30 30 H 1.00896 * 111.00309 * 56.04370 * 16 15 14 31 31 H 1.08990 * 109.47358 * 299.99539 * 17 16 15 32 32 H 1.09004 * 109.47457 * 60.00221 * 17 16 15 33 33 H 1.08994 * 112.85237 * 45.33193 * 18 17 16 34 34 H 1.09000 * 113.61298 * 334.56770 * 19 18 17 35 35 H 1.08998 * 113.60893 * 105.47080 * 19 18 17 36 36 H 1.08998 * 113.54123 * 270.81009 * 20 19 18 37 37 H 1.09003 * 113.66415 * 139.93411 * 20 19 18 38 38 H 1.08998 * 113.61648 * 220.08766 * 21 20 19 39 39 H 1.09002 * 113.69005 * 89.19419 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4980 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4401 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 1.4702 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5730 -3.2328 0.0026 12 8 6.3440 -2.2965 0.0024 13 7 6.0456 -4.4949 0.0030 14 6 7.4905 -4.7361 0.0037 15 6 7.7561 -6.2428 0.0047 16 7 9.2052 -6.4846 0.0048 17 6 9.4986 -7.9240 0.0063 18 6 11.0140 -8.1354 0.0057 19 6 11.6373 -8.1216 -1.4001 20 6 12.5321 -9.2818 -0.9272 21 6 11.4298 -9.6135 0.0925 22 1 -0.4850 0.8401 0.0004 23 1 3.6439 -3.4323 -0.8873 24 1 3.6432 -3.4311 0.8927 25 1 5.4289 -5.2437 0.0029 26 1 7.9332 -4.2889 0.8937 27 1 7.9338 -4.2891 -0.8862 28 1 7.3135 -6.6904 -0.8852 29 1 7.3129 -6.6893 0.8948 30 1 9.6485 -6.0246 0.7857 31 1 9.0680 -8.3816 0.8968 32 1 9.0676 -8.3837 -0.8831 33 1 11.5312 -7.4938 0.7189 34 1 10.9401 -8.4018 -2.1897 35 1 12.1878 -7.2080 -1.6246 36 1 13.4654 -8.9533 -0.4699 37 1 12.6781 -10.0566 -1.6798 38 1 11.8129 -9.9025 1.0711 39 1 10.6751 -10.3023 -0.2870 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123792075.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:55 Heat of formation + Delta-G solvation = -53.889545 kcal Electronic energy + Delta-G solvation = -17558.279850 eV Core-core repulsion = 14626.110253 eV Total energy + Delta-G solvation = -2932.169597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.67888 -39.83867 -37.36168 -35.24967 -34.66945 -31.80016 -29.83525 -27.87525 -26.98240 -26.37234 -23.26787 -23.08038 -21.81025 -20.25865 -19.86833 -17.90806 -17.45360 -17.15554 -17.04101 -16.49221 -16.43625 -15.87606 -15.67105 -15.14501 -14.89597 -14.74171 -14.46203 -14.25221 -13.68847 -13.34713 -13.26876 -13.03087 -12.88190 -12.79046 -12.64900 -12.44423 -12.19768 -11.86658 -11.41300 -11.17050 -11.15258 -11.07681 -10.96545 -10.53608 -10.16952 -9.40190 -8.99870 -8.51534 -6.22413 0.98613 1.31753 1.46865 1.55067 1.55575 2.15689 2.25591 2.70602 2.86653 3.24130 3.75688 3.81706 3.84814 3.93651 3.99479 4.05014 4.15542 4.24388 4.47061 4.47251 4.52036 4.57698 4.69951 4.91082 4.91303 4.91967 4.95120 5.04855 5.11776 5.18981 5.35988 5.43243 5.65280 5.70816 5.99476 6.11514 6.38966 6.45196 6.93674 7.17983 8.60718 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.071467 B = 0.002321 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 391.693854 B =12061.525037 C =12310.163584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.529 4.529 8 H 0.063 0.937 9 S -0.178 6.178 10 C -0.111 4.111 11 C 0.535 3.465 12 O -0.564 6.564 13 N -0.711 5.711 14 C 0.126 3.874 15 C 0.061 3.939 16 N -0.695 5.695 17 C 0.073 3.927 18 C -0.109 4.109 19 C -0.132 4.132 20 C -0.145 4.145 21 C -0.133 4.133 22 H 0.277 0.723 23 H 0.115 0.885 24 H 0.116 0.884 25 H 0.418 0.582 26 H 0.058 0.942 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.050 0.950 30 H 0.346 0.654 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.926 -21.330 0.577 30.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.161 4.161 3 Si 0.737 3.263 4 H -0.187 1.187 5 H -0.183 1.183 6 H -0.161 1.161 7 C -0.676 4.676 8 H 0.081 0.919 9 S 0.049 5.951 10 C -0.262 4.262 11 C 0.320 3.680 12 O -0.442 6.442 13 N -0.365 5.365 14 C 0.001 3.999 15 C -0.069 4.069 16 N -0.327 5.327 17 C -0.056 4.056 18 C -0.127 4.127 19 C -0.169 4.169 20 C -0.182 4.182 21 C -0.171 4.171 22 H 0.086 0.914 23 H 0.133 0.867 24 H 0.134 0.866 25 H 0.255 0.745 26 H 0.077 0.923 27 H 0.078 0.922 28 H 0.103 0.897 29 H 0.068 0.932 30 H 0.165 0.835 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 23.100 -19.661 -0.105 30.335 hybrid contribution -1.702 -0.737 0.821 2.029 sum 21.398 -20.398 0.717 29.571 Atomic orbital electron populations 1.70016 1.07263 1.29012 1.49124 1.25571 0.95298 1.02275 0.92920 0.85862 0.80661 0.79604 0.80211 1.18715 1.18316 1.16110 1.22461 0.90199 0.96729 1.58246 0.91851 1.84741 1.06489 1.06309 1.97596 1.23269 0.95706 0.99570 1.07617 1.19970 0.89469 0.83293 0.75261 1.90697 1.59390 1.43889 1.50229 1.45603 1.08637 1.06916 1.75383 1.21215 0.79800 0.96867 1.01987 1.21959 0.89509 0.93156 1.02228 1.60310 1.09308 1.12203 1.50854 1.21975 0.95612 0.87212 1.00770 1.22546 0.94498 0.97421 0.98273 1.22915 0.98848 0.98567 0.96612 1.22880 0.97598 0.98607 0.99158 1.22917 0.98631 0.95676 0.99886 0.91370 0.86701 0.86623 0.74529 0.92316 0.92192 0.89660 0.93199 0.83515 0.94502 0.90901 0.89299 0.90434 0.92250 0.90062 0.91186 0.91097 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.79 13.97 21.65 0.30 -55.49 16 2 C 0.04 2.63 5.50 84.86 0.47 3.10 16 3 Si 0.91 45.16 27.74 68.60 1.90 47.06 16 4 H -0.26 -12.66 7.11 99.48 0.71 -11.95 16 5 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.24 -11.71 6.74 99.48 0.67 -11.04 16 7 C -0.53 -30.79 10.04 67.96 0.68 -30.11 16 8 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 9 S -0.18 -9.01 18.55 -56.49 -1.05 -10.06 16 10 C -0.11 -4.12 6.16 71.24 0.44 -3.68 16 11 C 0.53 18.30 7.85 87.66 0.69 18.98 16 12 O -0.56 -24.37 15.86 -3.04 -0.05 -24.41 16 13 N -0.71 -16.31 5.56 -463.06 -2.57 -18.88 16 14 C 0.13 2.58 5.93 86.38 0.51 3.09 16 15 C 0.06 0.84 5.80 86.30 0.50 1.34 16 16 N -0.69 -9.57 6.50 -513.86 -3.34 -12.91 16 17 C 0.07 0.83 5.51 86.31 0.48 1.30 16 18 C -0.11 -1.17 3.89 -10.26 -0.04 -1.21 16 19 C -0.13 -1.58 7.65 31.18 0.24 -1.34 16 20 C -0.15 -1.42 8.09 31.18 0.25 -1.16 16 21 C -0.13 -1.21 7.65 31.12 0.24 -0.97 16 22 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 23 H 0.11 3.89 8.14 -2.39 -0.02 3.87 16 24 H 0.12 3.90 8.14 -2.40 -0.02 3.88 16 25 H 0.42 6.63 8.47 -92.71 -0.79 5.85 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 28 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.35 4.41 8.73 -89.70 -0.78 3.63 16 31 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.07 0.85 7.87 -2.38 -0.02 0.84 16 33 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 0.96 7.92 -2.39 -0.02 0.94 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.08 0.71 8.10 -2.39 -0.02 0.69 16 Total: -1.00 -71.91 338.32 -0.92 -72.83 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -0.57 Total: 12.51 kcal Atomic # 6 Polarization: -15.10 SS G_CDS: 4.45 Total: -10.65 kcal Atomic # 7 Polarization: -81.66 SS G_CDS: -5.61 Total: -87.28 kcal Atomic # 8 Polarization: -24.37 SS G_CDS: -0.05 Total: -24.41 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.90 Total: 47.06 kcal Atomic # 16 Polarization: -9.01 SS G_CDS: -1.05 Total: -10.06 kcal Total: -71.91 -0.92 -72.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123792075.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.940 kcal (2) G-P(sol) polarization free energy of solvation -71.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds