Wall clock time and date at job start Mon Mar 30 2020 01:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46993 * 2 1 4 4 H 1.09000 * 109.47129 * 54.99976 * 3 2 1 5 5 C 1.47201 * 109.47128 * 175.00023 * 3 2 1 6 6 N 3.43551 * 154.82341 * 8.43452 * 2 1 3 7 7 N 1.46502 * 109.47037 * 294.99961 * 3 2 1 8 8 C 1.34774 * 119.99871 * 155.00408 * 7 3 2 9 9 O 1.21282 * 120.00020 * 359.97438 * 8 7 3 10 10 C 1.50697 * 120.00081 * 180.02562 * 8 7 3 11 11 H 1.09007 * 109.46884 * 299.99860 * 10 8 7 12 12 C 1.50700 * 109.47200 * 59.99282 * 10 8 7 13 13 H 1.08004 * 120.00098 * 235.34711 * 12 10 8 14 14 C 1.37879 * 120.00121 * 55.35149 * 12 10 8 15 15 N 1.31522 * 119.99557 * 1.97514 * 14 12 10 16 16 Si 1.86792 * 120.00359 * 181.97419 * 14 12 10 17 17 H 1.48501 * 109.46890 * 89.99891 * 16 14 12 18 18 H 1.48491 * 109.47404 * 209.99697 * 16 14 12 19 19 H 1.48502 * 109.47223 * 330.00023 * 16 14 12 20 20 C 1.50693 * 109.47444 * 179.97438 * 10 8 7 21 21 C 1.38239 * 119.99873 * 226.93986 * 20 10 8 22 22 C 1.38240 * 119.99884 * 179.78262 * 21 20 10 23 23 C 1.38233 * 119.99828 * 0.44857 * 22 21 20 24 24 C 1.38236 * 120.00324 * 359.80184 * 23 22 21 25 25 C 1.38233 * 119.99643 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46858 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47497 * 60.00438 * 1 2 3 28 28 H 1.08997 * 109.47691 * 299.99791 * 1 2 3 29 29 H 1.09009 * 109.47317 * 119.99966 * 2 1 3 30 30 H 1.09002 * 109.47423 * 239.99811 * 2 1 3 31 31 H 0.96994 * 119.99739 * 334.99804 * 7 3 2 32 32 H 0.96994 * 119.99837 * 180.02562 * 15 14 12 33 33 H 1.08000 * 120.00171 * 0.02562 * 21 20 10 34 34 H 1.07998 * 120.00268 * 180.27348 * 22 21 20 35 35 H 1.08005 * 120.00128 * 179.83184 * 23 22 21 36 36 H 1.08000 * 120.00140 * 179.97438 * 24 23 22 37 37 H 1.08008 * 119.99767 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5069 1.4443 0.1210 6 7 4.6391 1.4457 0.2144 7 7 1.6523 2.0974 -1.2518 8 6 1.5256 3.4384 -1.2996 9 8 1.7319 4.1028 -0.3062 10 6 1.1263 4.1121 -2.5871 11 1 1.8646 3.8897 -3.3576 12 6 -0.2234 3.6029 -3.0230 13 1 -0.3470 3.1742 -4.0066 14 6 -1.3006 3.6844 -2.1662 15 7 -1.1592 4.2417 -0.9833 16 14 -2.9607 3.0034 -2.6853 17 1 -3.0608 1.5790 -2.2775 18 1 -4.0420 3.7827 -2.0310 19 1 -3.0989 3.1068 -4.1603 20 6 1.0556 5.6021 -2.3735 21 6 -0.0355 6.3153 -2.8337 22 6 -0.1025 7.6815 -2.6338 23 6 0.9260 8.3359 -1.9819 24 6 2.0195 7.6235 -1.5263 25 6 2.0843 6.2567 -1.7222 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.4871 1.5660 -2.0462 32 1 -1.9168 4.2987 -0.3804 33 1 -0.8375 5.8046 -3.3459 34 1 -0.9570 8.2381 -2.9893 35 1 0.8749 9.4037 -1.8281 36 1 2.8232 8.1348 -1.0174 37 1 2.9389 5.7001 -1.3666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001128109133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:00 Heat of formation + Delta-G solvation = 8.473221 kcal Electronic energy + Delta-G solvation = -21048.071772 eV Core-core repulsion = 17983.162476 eV Total energy + Delta-G solvation = -3064.909296 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.26906 -37.88934 -36.42418 -34.75917 -33.67900 -31.62100 -30.84220 -29.68732 -27.83025 -26.49168 -23.91809 -21.78217 -21.28754 -20.78181 -19.40632 -17.73268 -16.91031 -16.01967 -15.64137 -15.24478 -14.91813 -14.10152 -13.84370 -13.56754 -13.55252 -13.24214 -13.11750 -12.78695 -12.38127 -12.22408 -12.15511 -11.95349 -11.74186 -11.43504 -11.31810 -11.08629 -10.87156 -10.81517 -10.71602 -10.50408 -10.06872 -9.72087 -9.43250 -8.78209 -8.47503 -8.39737 -7.71044 -7.42613 -6.18995 -4.35778 2.51851 2.59948 2.91248 3.05709 3.14940 3.26468 3.26742 3.88120 4.13626 4.23214 4.52207 4.99930 5.02874 5.07779 5.19354 5.48728 5.78639 5.85038 5.87206 5.96421 6.04473 6.05107 6.20783 6.35691 6.48988 6.56730 6.65952 6.75928 6.85598 7.10732 7.19335 7.22905 7.54184 7.62221 7.64307 7.74928 7.82287 8.13372 8.24304 8.43837 8.70409 9.30975 9.50436 10.81293 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.008823 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.270418 B = 3172.789764 C = 4740.898428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.241 3.759 4 H 0.124 0.876 5 C 0.207 3.793 6 N -0.446 5.446 7 N -0.724 5.724 8 C 0.552 3.448 9 O -0.538 6.538 10 C 0.058 3.942 11 H 0.058 0.942 12 C -0.541 4.541 13 H 0.068 0.932 14 C 0.076 3.924 15 N -0.841 5.841 16 Si 0.885 3.115 17 H -0.278 1.278 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.016 4.016 21 C -0.064 4.064 22 C -0.147 4.147 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.101 4.101 26 H 0.054 0.946 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.404 0.596 32 H 0.266 0.734 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.464 -4.504 -1.226 4.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.131 3.869 4 H 0.142 0.858 5 C -0.113 4.113 6 N -0.123 5.123 7 N -0.378 5.378 8 C 0.342 3.658 9 O -0.413 6.413 10 C 0.037 3.963 11 H 0.076 0.924 12 C -0.578 4.578 13 H 0.086 0.914 14 C -0.132 4.132 15 N -0.473 5.473 16 Si 0.712 3.288 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.017 4.017 21 C -0.082 4.082 22 C -0.165 4.165 23 C -0.162 4.162 24 C -0.162 4.162 25 C -0.119 4.119 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.239 0.761 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.191 -3.914 -0.169 4.488 hybrid contribution -1.630 -0.510 -0.288 1.732 sum 0.560 -4.423 -0.457 4.482 Atomic orbital electron populations 1.21742 0.93660 1.01524 1.03913 1.21711 0.97745 0.93157 1.03183 1.18252 0.80228 0.95719 0.92668 0.85827 1.30276 0.95988 0.92244 0.92780 1.81077 1.13324 1.09293 1.08599 1.45899 1.72562 1.08256 1.11112 1.21255 0.72175 0.80479 0.91897 1.90569 1.49508 1.63794 1.37408 1.17866 0.98072 0.89407 0.90931 0.92367 1.20689 0.91685 1.43722 1.01729 0.91384 1.25036 0.98806 0.94375 0.94990 1.70067 1.31265 1.39067 1.06892 0.86695 0.83875 0.79211 0.79013 1.20342 1.21206 1.19696 1.19787 0.92364 0.95350 0.94161 1.21136 0.97350 0.92087 0.97607 1.20991 0.98242 0.95414 1.01897 1.20777 0.95456 0.98347 1.01614 1.20820 0.98320 0.94692 1.02355 1.20972 0.99161 0.93534 0.98251 0.92681 0.90857 0.92279 0.90533 0.90862 0.76083 0.92402 0.85385 0.88028 0.88215 0.88138 0.87643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.80 37.16 0.36 -1.48 16 2 C -0.12 -1.35 5.43 -26.73 -0.15 -1.50 16 3 C 0.24 3.67 2.41 -70.72 -0.17 3.50 16 4 H 0.12 2.08 7.58 -51.93 -0.39 1.68 16 5 C 0.21 3.47 14.93 -20.76 -0.31 3.16 16 6 N -0.45 -8.29 18.54 42.15 0.78 -7.51 16 7 N -0.72 -12.57 4.39 -56.55 -0.25 -12.82 16 8 C 0.55 11.97 5.40 -10.99 -0.06 11.91 16 9 O -0.54 -13.36 13.62 5.56 0.08 -13.29 16 10 C 0.06 1.29 2.78 -94.08 -0.26 1.03 16 11 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 12 C -0.54 -12.13 7.11 -34.44 -0.24 -12.37 16 13 H 0.07 1.49 7.81 -52.48 -0.41 1.08 16 14 C 0.08 1.76 4.00 -17.82 -0.07 1.69 16 15 N -0.84 -21.14 10.89 55.43 0.60 -20.54 16 16 Si 0.88 18.38 29.54 -169.99 -5.02 13.36 16 17 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 18 H -0.29 -6.20 7.11 56.52 0.40 -5.80 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 C -0.02 -0.36 4.51 -104.63 -0.47 -0.83 16 21 C -0.06 -1.44 8.21 -39.58 -0.32 -1.76 16 22 C -0.15 -3.00 10.05 -39.58 -0.40 -3.40 16 23 C -0.14 -2.80 10.05 -39.58 -0.40 -3.20 16 24 C -0.14 -2.93 10.05 -39.58 -0.40 -3.33 16 25 C -0.10 -2.26 8.21 -39.58 -0.33 -2.58 16 26 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.07 1.06 7.75 -51.93 -0.40 0.66 16 28 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.08 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.40 6.20 8.49 -40.82 -0.35 5.85 16 32 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 33 H 0.13 2.95 6.04 -52.49 -0.32 2.64 16 34 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.10 1.80 8.06 -52.49 -0.42 1.37 16 37 H 0.11 2.37 7.01 -52.48 -0.37 2.01 16 LS Contribution 319.10 15.07 4.81 4.81 Total: -1.00 -28.37 319.10 -6.97 -35.34 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -4.75 Total: 9.81 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -3.21 Total: -9.16 kcal Atomic # 7 Polarization: -42.00 SS G_CDS: 1.14 Total: -40.86 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.08 Total: -13.29 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.37 -6.97 -35.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128109133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.813 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds