Wall clock time and date at job start Mon Mar 30 2020 01:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.46993 * 2 1 4 4 H 1.09000 * 109.47129 * 54.99976 * 3 2 1 5 5 C 1.47201 * 109.47128 * 175.00023 * 3 2 1 6 6 N 3.43551 * 154.82341 * 8.43452 * 2 1 3 7 7 N 1.46502 * 109.47037 * 294.99961 * 3 2 1 8 8 C 1.34774 * 119.99871 * 155.00408 * 7 3 2 9 9 O 1.21282 * 120.00020 * 359.97438 * 8 7 3 10 10 C 1.50697 * 120.00081 * 180.02562 * 8 7 3 11 11 H 1.09007 * 109.46884 * 299.99860 * 10 8 7 12 12 C 1.50700 * 109.47200 * 59.99282 * 10 8 7 13 13 H 1.08004 * 120.00098 * 235.34711 * 12 10 8 14 14 C 1.37879 * 120.00121 * 55.35149 * 12 10 8 15 15 N 1.31522 * 119.99557 * 1.97514 * 14 12 10 16 16 Si 1.86792 * 120.00359 * 181.97419 * 14 12 10 17 17 H 1.48501 * 109.46890 * 89.99891 * 16 14 12 18 18 H 1.48491 * 109.47404 * 209.99697 * 16 14 12 19 19 H 1.48502 * 109.47223 * 330.00023 * 16 14 12 20 20 C 1.50693 * 109.47444 * 179.97438 * 10 8 7 21 21 C 1.38239 * 119.99873 * 226.93986 * 20 10 8 22 22 C 1.38240 * 119.99884 * 179.78262 * 21 20 10 23 23 C 1.38233 * 119.99828 * 0.44857 * 22 21 20 24 24 C 1.38236 * 120.00324 * 359.80184 * 23 22 21 25 25 C 1.38233 * 119.99643 * 359.97438 * 24 23 22 26 26 H 1.09002 * 109.46858 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47497 * 60.00438 * 1 2 3 28 28 H 1.08997 * 109.47691 * 299.99791 * 1 2 3 29 29 H 1.09009 * 109.47317 * 119.99966 * 2 1 3 30 30 H 1.09002 * 109.47423 * 239.99811 * 2 1 3 31 31 H 0.96994 * 119.99739 * 334.99804 * 7 3 2 32 32 H 0.96994 * 119.99837 * 180.02562 * 15 14 12 33 33 H 1.08000 * 120.00171 * 0.02562 * 21 20 10 34 34 H 1.07998 * 120.00268 * 180.27348 * 22 21 20 35 35 H 1.08005 * 120.00128 * 179.83184 * 23 22 21 36 36 H 1.08000 * 120.00140 * 179.97438 * 24 23 22 37 37 H 1.08008 * 119.99767 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5069 1.4443 0.1210 6 7 4.6391 1.4457 0.2144 7 7 1.6523 2.0974 -1.2518 8 6 1.5256 3.4384 -1.2996 9 8 1.7319 4.1028 -0.3062 10 6 1.1263 4.1121 -2.5871 11 1 1.8646 3.8897 -3.3576 12 6 -0.2234 3.6029 -3.0230 13 1 -0.3470 3.1742 -4.0066 14 6 -1.3006 3.6844 -2.1662 15 7 -1.1592 4.2417 -0.9833 16 14 -2.9607 3.0034 -2.6853 17 1 -3.0608 1.5790 -2.2775 18 1 -4.0420 3.7827 -2.0310 19 1 -3.0989 3.1068 -4.1603 20 6 1.0556 5.6021 -2.3735 21 6 -0.0355 6.3153 -2.8337 22 6 -0.1025 7.6815 -2.6338 23 6 0.9260 8.3359 -1.9819 24 6 2.0195 7.6235 -1.5263 25 6 2.0843 6.2567 -1.7222 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.4871 1.5660 -2.0462 32 1 -1.9168 4.2987 -0.3804 33 1 -0.8375 5.8046 -3.3459 34 1 -0.9570 8.2381 -2.9893 35 1 0.8749 9.4037 -1.8281 36 1 2.8232 8.1348 -1.0174 37 1 2.9389 5.7001 -1.3666 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128109133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:59 Heat of formation + Delta-G solvation = -6.936002 kcal Electronic energy + Delta-G solvation = -21048.739966 eV Core-core repulsion = 17983.162476 eV Total energy + Delta-G solvation = -3065.577490 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88337 -39.42927 -37.92222 -36.12712 -35.43546 -32.98481 -32.51529 -31.33166 -29.34111 -27.92959 -25.64477 -23.00034 -22.81179 -22.36899 -21.04219 -19.12424 -18.59843 -17.52370 -17.12502 -16.88895 -16.62167 -15.73721 -15.34968 -15.00226 -14.92361 -14.60499 -14.53990 -14.27866 -13.92779 -13.90149 -13.76486 -13.49681 -12.99902 -12.97944 -12.69928 -12.55127 -12.47475 -12.23160 -11.99340 -11.75665 -11.72956 -11.39532 -11.13612 -10.57102 -10.18223 -9.97982 -9.36596 -9.08167 -7.98606 -6.18568 0.88909 0.94654 1.49077 1.51705 1.56207 1.61400 1.69921 2.25777 2.51415 2.75087 3.10984 3.28115 3.37870 3.90705 4.16027 4.34724 4.36697 4.45982 4.52140 4.64784 4.69976 4.82299 4.92198 5.02664 5.09305 5.13831 5.17938 5.25945 5.47244 5.56424 5.56932 5.76317 5.81307 5.91270 5.97293 6.02070 6.45096 6.45969 6.55978 6.80724 7.03294 7.50616 7.86483 9.00352 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014487 B = 0.008823 C = 0.005905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.270418 B = 3172.789764 C = 4740.898428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C 0.244 3.756 4 H 0.109 0.891 5 C 0.224 3.776 6 N -0.476 5.476 7 N -0.713 5.713 8 C 0.552 3.448 9 O -0.575 6.575 10 C 0.048 3.952 11 H 0.067 0.933 12 C -0.533 4.533 13 H 0.073 0.927 14 C 0.048 3.952 15 N -0.869 5.869 16 Si 0.936 3.064 17 H -0.269 1.269 18 H -0.300 1.300 19 H -0.269 1.269 20 C -0.035 4.035 21 C -0.084 4.084 22 C -0.151 4.151 23 C -0.141 4.141 24 C -0.148 4.148 25 C -0.120 4.120 26 H 0.080 0.920 27 H 0.048 0.952 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.415 0.585 32 H 0.257 0.743 33 H 0.116 0.884 34 H 0.127 0.873 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.079 -5.089 -1.623 5.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C 0.134 3.866 4 H 0.126 0.874 5 C -0.096 4.096 6 N -0.154 5.154 7 N -0.367 5.367 8 C 0.342 3.658 9 O -0.453 6.453 10 C 0.027 3.973 11 H 0.085 0.915 12 C -0.571 4.571 13 H 0.091 0.909 14 C -0.157 4.157 15 N -0.503 5.503 16 Si 0.762 3.238 17 H -0.194 1.194 18 H -0.227 1.227 19 H -0.193 1.193 20 C -0.036 4.036 21 C -0.102 4.102 22 C -0.169 4.169 23 C -0.159 4.159 24 C -0.166 4.166 25 C -0.138 4.138 26 H 0.099 0.901 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.120 0.880 30 H 0.112 0.888 31 H 0.252 0.748 32 H 0.066 0.934 33 H 0.134 0.866 34 H 0.145 0.855 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.813 -4.550 -0.603 4.934 hybrid contribution -1.482 -0.287 -0.191 1.521 sum 0.331 -4.837 -0.793 4.913 Atomic orbital electron populations 1.21708 0.94103 1.02639 1.02086 1.21729 0.97051 0.90374 1.05460 1.18474 0.79278 0.97893 0.90946 0.87389 1.30451 0.96034 0.91211 0.91876 1.81092 1.14249 1.10496 1.09513 1.45724 1.71366 1.07183 1.12454 1.21157 0.71799 0.81646 0.91178 1.90542 1.51369 1.64976 1.38403 1.17993 0.98262 0.89534 0.91548 0.91489 1.20828 0.91876 1.42741 1.01618 0.90922 1.25469 1.01018 0.94433 0.94755 1.70221 1.31319 1.40882 1.07906 0.85898 0.80529 0.78803 0.78537 1.19390 1.22712 1.19321 1.19956 0.92926 0.95880 0.94859 1.21142 0.97115 0.93278 0.98654 1.21323 0.99351 0.94811 1.01380 1.21160 0.94407 1.00121 1.00244 1.21162 0.99422 0.94069 1.01947 1.21009 0.98990 0.94652 0.99188 0.90074 0.93292 0.93472 0.88009 0.88775 0.74811 0.93378 0.86635 0.85534 0.84604 0.85717 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.34 9.80 71.98 0.71 -2.63 16 2 C -0.11 -2.18 5.43 30.59 0.17 -2.01 16 3 C 0.24 7.22 2.41 43.18 0.10 7.32 16 4 H 0.11 3.65 7.58 -2.39 -0.02 3.63 16 5 C 0.22 7.33 14.93 89.44 1.34 8.67 16 6 N -0.48 -17.44 18.54 20.01 0.37 -17.07 16 7 N -0.71 -24.52 4.39 -451.21 -1.98 -26.50 16 8 C 0.55 24.24 5.40 87.66 0.47 24.71 16 9 O -0.57 -29.24 13.62 -3.04 -0.04 -29.29 16 10 C 0.05 2.13 2.78 -13.04 -0.04 2.09 16 11 H 0.07 2.77 8.14 -2.38 -0.02 2.75 16 12 C -0.53 -23.82 7.11 25.60 0.18 -23.64 16 13 H 0.07 3.12 7.81 -2.91 -0.02 3.10 16 14 C 0.05 2.24 4.00 84.65 0.34 2.58 16 15 N -0.87 -44.31 10.89 21.45 0.23 -44.08 16 16 Si 0.94 37.47 29.54 68.60 2.03 39.49 16 17 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 18 H -0.30 -12.69 7.11 99.48 0.71 -11.99 16 19 H -0.27 -10.52 7.11 99.48 0.71 -9.81 16 20 C -0.04 -1.64 4.51 -19.87 -0.09 -1.73 16 21 C -0.08 -3.78 8.21 22.27 0.18 -3.60 16 22 C -0.15 -5.94 10.05 22.27 0.22 -5.72 16 23 C -0.14 -5.21 10.05 22.27 0.22 -4.99 16 24 C -0.15 -5.86 10.05 22.27 0.22 -5.64 16 25 C -0.12 -5.42 8.21 22.27 0.18 -5.24 16 26 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.05 1.35 7.75 -2.39 -0.02 1.33 16 28 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.41 12.34 8.49 -92.71 -0.79 11.55 16 32 H 0.26 13.12 8.31 -92.71 -0.77 12.34 16 33 H 0.12 5.39 6.04 -2.91 -0.02 5.37 16 34 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 35 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 36 H 0.12 4.23 8.06 -2.91 -0.02 4.20 16 37 H 0.09 4.35 7.01 -2.91 -0.02 4.33 16 Total: -1.00 -61.25 319.10 5.12 -56.13 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.30 Total: 31.14 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 4.22 Total: -9.83 kcal Atomic # 7 Polarization: -86.27 SS G_CDS: -1.38 Total: -87.65 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -0.04 Total: -29.29 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.49 kcal Total: -61.25 5.12 -56.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128109133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.195 kcal (2) G-P(sol) polarization free energy of solvation -61.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds