Wall clock time and date at job start Mon Mar 30 2020 01:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35574 * 116.99946 * 2 1 4 4 N 1.31563 * 119.20681 * 0.24938 * 3 2 1 5 5 C 1.33760 * 121.26296 * 180.31014 * 4 3 2 6 6 C 1.40551 * 121.00454 * 179.72636 * 5 4 3 7 7 C 1.36113 * 119.75952 * 179.72812 * 6 5 4 8 8 C 1.39310 * 121.04259 * 359.97438 * 7 6 5 9 9 C 1.36189 * 120.85655 * 0.02562 * 8 7 6 10 10 C 1.40371 * 119.63291 * 359.97438 * 9 8 7 11 11 C 1.40912 * 121.29068 * 180.02562 * 10 9 8 12 12 C 1.36330 * 118.25335 * 179.97438 * 11 10 9 13 13 C 1.50706 * 120.05074 * 180.02562 * 12 11 10 14 14 N 1.46493 * 109.47092 * 105.00675 * 13 12 11 15 15 C 1.46503 * 119.99601 * 269.99767 * 14 13 12 16 16 C 1.36937 * 120.00472 * 89.99635 * 14 13 12 17 17 H 1.07995 * 119.99591 * 22.75603 * 16 14 13 18 18 C 1.38804 * 120.00055 * 202.75322 * 16 14 13 19 19 N 1.31623 * 120.00498 * 11.06459 * 18 16 14 20 20 Si 1.86806 * 119.99939 * 191.06661 * 18 16 14 21 21 H 1.48496 * 109.46951 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47291 * 119.99945 * 20 18 16 23 23 H 1.48498 * 109.46924 * 240.00023 * 20 18 16 24 24 H 1.08996 * 109.47395 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46691 * 300.00446 * 1 2 3 26 26 H 1.09003 * 109.46927 * 59.99669 * 1 2 3 27 27 H 1.08002 * 120.11418 * 359.74329 * 6 5 4 28 28 H 1.07997 * 119.47998 * 179.97438 * 7 6 5 29 29 H 1.08004 * 119.57070 * 180.02562 * 8 7 6 30 30 H 1.07997 * 120.18050 * 179.97438 * 9 8 7 31 31 H 1.07996 * 120.87254 * 0.02562 * 11 10 9 32 32 H 1.09004 * 109.46723 * 225.00478 * 13 12 11 33 33 H 1.08998 * 109.46822 * 344.99821 * 13 12 11 34 34 H 1.09000 * 109.47185 * 94.25208 * 15 14 13 35 35 H 1.08999 * 109.46811 * 214.24655 * 15 14 13 36 36 H 1.08995 * 109.47322 * 334.24793 * 15 14 13 37 37 H 0.96993 * 119.99753 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 7 1.3128 2.3013 0.0050 5 6 1.8768 3.5142 -0.0010 6 6 1.0898 4.6786 -0.0013 7 6 1.6905 5.9001 -0.0019 8 6 3.0786 6.0180 -0.0016 9 6 3.8735 4.9122 -0.0012 10 6 3.2879 3.6365 -0.0006 11 6 4.0770 2.4690 0.0003 12 6 3.4435 1.2618 0.0014 13 6 4.2478 -0.0126 0.0030 14 7 4.2056 -0.6150 1.3376 15 6 5.2208 -0.2618 2.3331 16 6 3.2172 -1.5082 1.6548 17 1 2.7053 -2.0476 0.8717 18 6 2.8735 -1.7203 2.9828 19 7 3.3342 -0.9172 3.9183 20 14 1.7571 -3.1458 3.4424 21 1 1.3791 -3.8936 2.2164 22 1 2.4721 -4.0539 4.3748 23 1 0.5332 -2.6234 4.1014 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.0123 4.6045 -0.0009 28 1 1.0813 6.7919 -0.0026 29 1 3.5301 6.9991 -0.0016 30 1 4.9484 5.0163 -0.0014 31 1 5.1553 2.5289 0.0010 32 1 3.8274 -0.7084 -0.7232 33 1 5.2812 0.2097 -0.2630 34 1 4.8490 0.5493 2.9592 35 1 5.4377 -1.1305 2.9547 36 1 6.1309 0.0585 1.8260 37 1 3.0942 -1.0657 4.8463 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137206846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:39 Heat of formation + Delta-G solvation = 46.100543 kcal Electronic energy + Delta-G solvation = -21017.976271 eV Core-core repulsion = 17954.698618 eV Total energy + Delta-G solvation = -3063.277653 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.52188 -38.33844 -36.20502 -35.25972 -33.13618 -31.45322 -29.85214 -29.40290 -26.88723 -26.21987 -25.58304 -22.97178 -22.59900 -21.71742 -20.66866 -18.19438 -17.49635 -16.64762 -16.33097 -15.45100 -14.98731 -14.78049 -14.42788 -13.90236 -13.64857 -13.49182 -13.41175 -13.24226 -12.75708 -12.72094 -11.88023 -11.59591 -11.44159 -11.36270 -11.22748 -10.91861 -10.81577 -10.63624 -10.47178 -10.16280 -9.97103 -9.95829 -9.80556 -9.11660 -8.54162 -7.93200 -7.66627 -6.79292 -5.72724 -3.13074 0.85225 1.34234 2.43590 3.32250 3.37994 3.44682 3.46648 3.73674 4.48435 4.58863 4.71165 4.97190 5.13941 5.26710 5.35991 5.45068 5.51497 5.67414 5.68361 5.75596 5.76590 5.84211 6.03776 6.10732 6.17118 6.29553 6.40677 6.52137 6.61960 6.69419 6.72690 6.88016 6.94433 7.10124 7.36085 7.71924 7.86877 7.89689 8.37533 8.41950 9.23178 9.83676 10.31879 11.32389 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.006244 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.352964 B = 4483.240571 C = 4979.317647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.270 6.270 3 C 0.384 3.616 4 N -0.558 5.558 5 C 0.159 3.841 6 C -0.106 4.106 7 C -0.107 4.107 8 C -0.144 4.144 9 C -0.084 4.084 10 C -0.126 4.126 11 C -0.057 4.057 12 C -0.134 4.134 13 C 0.188 3.812 14 N -0.586 5.586 15 C 0.162 3.838 16 C -0.228 4.228 17 H 0.076 0.924 18 C -0.003 4.003 19 N -0.907 5.907 20 Si 0.902 3.098 21 H -0.276 1.276 22 H -0.290 1.290 23 H -0.292 1.292 24 H 0.090 0.910 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.126 0.874 28 H 0.120 0.880 29 H 0.118 0.882 30 H 0.123 0.877 31 H 0.136 0.864 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.028 0.972 35 H 0.049 0.951 36 H -0.001 1.001 37 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 9.415 -8.873 12.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.173 6.173 3 C 0.191 3.809 4 N -0.287 5.287 5 C 0.038 3.962 6 C -0.125 4.125 7 C -0.127 4.127 8 C -0.163 4.163 9 C -0.103 4.103 10 C -0.129 4.129 11 C -0.084 4.084 12 C -0.141 4.141 13 C 0.060 3.940 14 N -0.305 5.305 15 C 0.017 3.983 16 C -0.357 4.357 17 H 0.094 0.906 18 C -0.200 4.200 19 N -0.552 5.552 20 Si 0.733 3.267 21 H -0.201 1.201 22 H -0.217 1.217 23 H -0.219 1.219 24 H 0.108 0.892 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.144 0.856 28 H 0.138 0.862 29 H 0.136 0.864 30 H 0.141 0.859 31 H 0.154 0.846 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.068 0.932 36 H 0.017 0.983 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.433 9.027 -8.642 12.579 hybrid contribution -0.213 -0.317 0.702 0.800 sum -1.646 8.709 -7.940 11.900 Atomic orbital electron populations 1.22751 0.78788 1.02365 1.01493 1.86503 1.21422 1.23683 1.85698 1.19928 0.89110 0.84492 0.87391 1.67649 1.39393 0.97885 1.23727 1.18361 0.90004 0.90678 0.97131 1.20629 0.99613 0.90538 1.01761 1.20705 0.94824 0.97029 1.00186 1.20697 0.93748 0.98354 1.03463 1.20873 0.99489 0.91322 0.98595 1.18733 0.94016 0.94559 1.05551 1.21036 0.99590 0.90207 0.97539 1.21084 0.92222 0.99361 1.01398 1.19927 0.95435 0.88807 0.89796 1.44290 1.29740 1.46818 1.09679 1.20857 0.86973 0.99922 0.90530 1.19342 1.12307 1.12470 0.91613 0.90581 1.25078 0.99298 0.98932 0.96727 1.70078 1.47847 1.37144 1.00159 0.86200 0.80271 0.82043 0.78235 1.20118 1.21701 1.21861 0.89150 0.92640 0.93218 0.85628 0.86195 0.86395 0.85932 0.84604 0.92088 0.92999 0.95402 0.93244 0.98295 0.93861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 10.36 101.05 1.05 1.78 16 2 O -0.27 -5.80 7.89 -18.42 -0.15 -5.94 16 3 C 0.38 8.25 7.46 -17.01 -0.13 8.12 16 4 N -0.56 -11.49 9.14 -11.05 -0.10 -11.59 16 5 C 0.16 2.99 6.60 -84.86 -0.56 2.43 16 6 C -0.11 -1.67 9.98 -39.47 -0.39 -2.06 16 7 C -0.11 -1.40 9.94 -39.95 -0.40 -1.80 16 8 C -0.14 -1.83 9.96 -39.92 -0.40 -2.23 16 9 C -0.08 -1.19 9.77 -39.52 -0.39 -1.58 16 10 C -0.13 -2.21 5.74 -106.78 -0.61 -2.83 16 11 C -0.06 -1.02 9.48 -39.26 -0.37 -1.40 16 12 C -0.13 -2.73 5.46 -104.65 -0.57 -3.30 16 13 C 0.19 3.87 5.52 -5.19 -0.03 3.84 16 14 N -0.59 -14.52 2.91 -182.51 -0.53 -15.05 16 15 C 0.16 3.95 9.01 59.85 0.54 4.49 16 16 C -0.23 -6.11 8.11 -15.06 -0.12 -6.23 16 17 H 0.08 2.03 7.55 -52.49 -0.40 1.63 16 18 C 0.00 -0.07 5.13 -17.43 -0.09 -0.16 16 19 N -0.91 -26.57 10.59 55.49 0.59 -25.98 16 20 Si 0.90 21.91 29.57 -169.99 -5.03 16.88 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 25 H 0.05 1.01 8.09 -51.93 -0.42 0.59 16 26 H 0.05 0.77 8.10 -51.93 -0.42 0.35 16 27 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 28 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 29 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 30 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.14 2.03 8.01 -52.49 -0.42 1.61 16 32 H 0.06 1.24 7.88 -51.93 -0.41 0.83 16 33 H 0.05 0.92 7.67 -51.93 -0.40 0.53 16 34 H 0.03 0.75 7.41 -51.93 -0.38 0.36 16 35 H 0.05 1.29 7.21 -51.93 -0.37 0.92 16 36 H 0.00 -0.03 7.84 -51.93 -0.41 -0.44 16 37 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -31.55 312.40 -7.86 -39.41 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -4.88 Total: -1.50 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -2.47 Total: -0.93 kcal Atomic # 7 Polarization: -52.58 SS G_CDS: -0.04 Total: -52.62 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.15 Total: -5.94 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.55 -7.86 -39.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137206846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.511 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.410 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds