Wall clock time and date at job start Mon Mar 30 2020 01:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35574 * 116.99946 * 2 1 4 4 N 1.31563 * 119.20681 * 0.24938 * 3 2 1 5 5 C 1.33760 * 121.26296 * 180.31014 * 4 3 2 6 6 C 1.40551 * 121.00454 * 179.72636 * 5 4 3 7 7 C 1.36113 * 119.75952 * 179.72812 * 6 5 4 8 8 C 1.39310 * 121.04259 * 359.97438 * 7 6 5 9 9 C 1.36189 * 120.85655 * 0.02562 * 8 7 6 10 10 C 1.40371 * 119.63291 * 359.97438 * 9 8 7 11 11 C 1.40912 * 121.29068 * 180.02562 * 10 9 8 12 12 C 1.36330 * 118.25335 * 179.97438 * 11 10 9 13 13 C 1.50706 * 120.05074 * 180.02562 * 12 11 10 14 14 N 1.46493 * 109.47092 * 105.00675 * 13 12 11 15 15 C 1.46503 * 119.99601 * 269.99767 * 14 13 12 16 16 C 1.36937 * 120.00472 * 89.99635 * 14 13 12 17 17 H 1.07995 * 119.99591 * 22.75603 * 16 14 13 18 18 C 1.38804 * 120.00055 * 202.75322 * 16 14 13 19 19 N 1.31623 * 120.00498 * 11.06459 * 18 16 14 20 20 Si 1.86806 * 119.99939 * 191.06661 * 18 16 14 21 21 H 1.48496 * 109.46951 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47291 * 119.99945 * 20 18 16 23 23 H 1.48498 * 109.46924 * 240.00023 * 20 18 16 24 24 H 1.08996 * 109.47395 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46691 * 300.00446 * 1 2 3 26 26 H 1.09003 * 109.46927 * 59.99669 * 1 2 3 27 27 H 1.08002 * 120.11418 * 359.74329 * 6 5 4 28 28 H 1.07997 * 119.47998 * 179.97438 * 7 6 5 29 29 H 1.08004 * 119.57070 * 180.02562 * 8 7 6 30 30 H 1.07997 * 120.18050 * 179.97438 * 9 8 7 31 31 H 1.07996 * 120.87254 * 0.02562 * 11 10 9 32 32 H 1.09004 * 109.46723 * 225.00478 * 13 12 11 33 33 H 1.08998 * 109.46822 * 344.99821 * 13 12 11 34 34 H 1.09000 * 109.47185 * 94.25208 * 15 14 13 35 35 H 1.08999 * 109.46811 * 214.24655 * 15 14 13 36 36 H 1.08995 * 109.47322 * 334.24793 * 15 14 13 37 37 H 0.96993 * 119.99753 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 7 1.3128 2.3013 0.0050 5 6 1.8768 3.5142 -0.0010 6 6 1.0898 4.6786 -0.0013 7 6 1.6905 5.9001 -0.0019 8 6 3.0786 6.0180 -0.0016 9 6 3.8735 4.9122 -0.0012 10 6 3.2879 3.6365 -0.0006 11 6 4.0770 2.4690 0.0003 12 6 3.4435 1.2618 0.0014 13 6 4.2478 -0.0126 0.0030 14 7 4.2056 -0.6150 1.3376 15 6 5.2208 -0.2618 2.3331 16 6 3.2172 -1.5082 1.6548 17 1 2.7053 -2.0476 0.8717 18 6 2.8735 -1.7203 2.9828 19 7 3.3342 -0.9172 3.9183 20 14 1.7571 -3.1458 3.4424 21 1 1.3791 -3.8936 2.2164 22 1 2.4721 -4.0539 4.3748 23 1 0.5332 -2.6234 4.1014 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 0.0123 4.6045 -0.0009 28 1 1.0813 6.7919 -0.0026 29 1 3.5301 6.9991 -0.0016 30 1 4.9484 5.0163 -0.0014 31 1 5.1553 2.5289 0.0010 32 1 3.8274 -0.7084 -0.7232 33 1 5.2812 0.2097 -0.2630 34 1 4.8490 0.5493 2.9592 35 1 5.4377 -1.1305 2.9547 36 1 6.1309 0.0585 1.8260 37 1 3.0942 -1.0657 4.8463 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137206846.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:39 Heat of formation + Delta-G solvation = 25.903915 kcal Electronic energy + Delta-G solvation = -21018.852063 eV Core-core repulsion = 17954.698618 eV Total energy + Delta-G solvation = -3064.153444 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.88930 -39.70353 -37.81158 -36.78932 -34.64227 -33.15791 -31.40802 -30.65286 -28.29510 -28.00925 -27.36319 -24.33007 -24.15651 -23.02710 -22.31286 -19.55533 -18.95004 -18.53944 -17.67018 -17.01022 -16.63089 -16.15936 -15.81475 -15.46996 -15.18512 -15.06705 -14.85762 -14.71632 -14.36682 -14.01445 -13.56409 -13.08661 -12.91579 -12.79252 -12.75316 -12.60242 -12.44544 -12.23858 -12.18142 -11.93920 -11.76253 -11.50475 -11.27578 -10.65674 -10.48760 -9.25619 -8.97602 -8.75700 -7.77369 -5.21753 -0.40665 0.02972 1.13827 1.43582 1.45151 1.55138 2.05845 2.33517 2.54972 3.21126 3.36004 3.45215 3.77748 3.84583 3.97256 4.00135 4.20042 4.34170 4.40877 4.42137 4.51208 4.55946 4.63409 4.71008 4.86904 4.90457 4.99370 5.06436 5.18464 5.26583 5.36998 5.52869 5.59586 5.63497 5.70745 5.78351 5.97987 6.38144 6.45007 6.97268 7.21329 7.90736 8.33002 9.26949 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.022660 B = 0.006244 C = 0.005622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.352964 B = 4483.240571 C = 4979.317647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.296 6.296 3 C 0.355 3.645 4 N -0.574 5.574 5 C 0.129 3.871 6 C -0.132 4.132 7 C -0.086 4.086 8 C -0.135 4.135 9 C -0.085 4.085 10 C -0.149 4.149 11 C -0.037 4.037 12 C -0.166 4.166 13 C 0.193 3.807 14 N -0.605 5.605 15 C 0.179 3.821 16 C -0.218 4.218 17 H 0.073 0.927 18 C -0.060 4.060 19 N -0.945 5.945 20 Si 0.956 3.044 21 H -0.262 1.262 22 H -0.293 1.293 23 H -0.300 1.300 24 H 0.110 0.890 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.130 0.870 28 H 0.159 0.841 29 H 0.161 0.839 30 H 0.155 0.845 31 H 0.168 0.832 32 H 0.057 0.943 33 H 0.083 0.917 34 H -0.006 1.006 35 H 0.020 0.980 36 H 0.038 0.962 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.189 12.230 -10.380 16.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.200 6.200 3 C 0.162 3.838 4 N -0.302 5.302 5 C 0.009 3.991 6 C -0.151 4.151 7 C -0.106 4.106 8 C -0.153 4.153 9 C -0.104 4.104 10 C -0.152 4.152 11 C -0.063 4.063 12 C -0.172 4.172 13 C 0.066 3.934 14 N -0.326 5.326 15 C 0.034 3.966 16 C -0.348 4.348 17 H 0.091 0.909 18 C -0.253 4.253 19 N -0.594 5.594 20 Si 0.785 3.215 21 H -0.186 1.186 22 H -0.220 1.220 23 H -0.228 1.228 24 H 0.128 0.872 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.148 0.852 28 H 0.177 0.823 29 H 0.179 0.821 30 H 0.172 0.828 31 H 0.186 0.814 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.013 0.987 35 H 0.039 0.961 36 H 0.056 0.944 37 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -0.638 11.870 -10.214 15.672 hybrid contribution -0.463 -0.815 0.962 1.343 sum -1.100 11.054 -9.251 14.457 Atomic orbital electron populations 1.22870 0.77502 1.03627 1.01311 1.86433 1.22942 1.24404 1.86233 1.20204 0.89886 0.84673 0.89010 1.67619 1.40050 0.98548 1.23986 1.18958 0.91488 0.90871 0.97829 1.20858 1.00016 0.90765 1.03487 1.21236 0.95757 0.97173 0.96393 1.21252 0.93458 0.99842 1.00699 1.21273 1.01433 0.90103 0.97550 1.19052 0.93622 0.96095 1.06409 1.21497 1.01181 0.89556 0.94076 1.21068 0.91947 0.99968 1.04240 1.19942 0.97167 0.88874 0.87381 1.44372 1.29476 1.48015 1.10694 1.20558 0.88262 0.97496 0.90311 1.19471 1.11500 1.12559 0.91317 0.90946 1.25694 1.01343 1.01317 0.96971 1.70249 1.50238 1.39086 0.99779 0.85342 0.78297 0.79730 0.78105 1.18602 1.22002 1.22788 0.87158 0.94346 0.91781 0.85212 0.82322 0.82147 0.82783 0.81435 0.92502 0.89896 0.98721 0.96079 0.94364 0.94918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 10.36 113.37 1.17 2.69 16 2 O -0.30 -13.15 7.89 -88.82 -0.70 -13.85 16 3 C 0.35 15.61 7.46 85.16 0.64 16.25 16 4 N -0.57 -24.08 9.14 -302.14 -2.76 -26.84 16 5 C 0.13 4.76 6.60 40.25 0.27 5.02 16 6 C -0.13 -3.90 9.98 22.34 0.22 -3.68 16 7 C -0.09 -1.86 9.94 22.03 0.22 -1.64 16 8 C -0.13 -2.68 9.96 22.05 0.22 -2.46 16 9 C -0.09 -2.04 9.77 22.31 0.22 -1.82 16 10 C -0.15 -4.93 5.74 -21.27 -0.12 -5.06 16 11 C -0.04 -1.27 9.48 22.48 0.21 -1.05 16 12 C -0.17 -6.77 5.46 -19.88 -0.11 -6.88 16 13 C 0.19 7.85 5.52 85.64 0.47 8.32 16 14 N -0.60 -30.30 2.91 -731.33 -2.13 -32.42 16 15 C 0.18 8.82 9.01 127.77 1.15 9.97 16 16 C -0.22 -11.98 8.11 84.03 0.68 -11.30 16 17 H 0.07 3.95 7.55 -2.91 -0.02 3.93 16 18 C -0.06 -3.43 5.13 84.86 0.44 -3.00 16 19 N -0.94 -57.71 10.59 21.65 0.23 -57.48 16 20 Si 0.96 46.49 29.57 68.60 2.03 48.52 16 21 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 23 H -0.30 -14.85 7.11 99.48 0.71 -14.14 16 24 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 25 H 0.04 1.47 8.09 -2.39 -0.02 1.45 16 26 H 0.06 2.05 8.10 -2.39 -0.02 2.03 16 27 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 28 H 0.16 2.22 8.06 -2.91 -0.02 2.19 16 29 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 30 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 31 H 0.17 4.42 8.01 -2.91 -0.02 4.40 16 32 H 0.06 2.32 7.88 -2.38 -0.02 2.30 16 33 H 0.08 2.77 7.67 -2.39 -0.02 2.76 16 34 H -0.01 -0.31 7.41 -2.39 -0.02 -0.33 16 35 H 0.02 1.11 7.21 -2.39 -0.02 1.10 16 36 H 0.04 1.54 7.84 -2.39 -0.02 1.52 16 37 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -72.38 312.40 3.41 -68.97 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: 1.06 Total: 7.74 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: 5.68 Total: 5.37 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -4.66 Total: -116.74 kcal Atomic # 8 Polarization: -13.15 SS G_CDS: -0.70 Total: -13.85 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -72.38 3.41 -68.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137206846.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.876 kcal (2) G-P(sol) polarization free energy of solvation -72.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds