Wall clock time and date at job start Mon Mar 30 2020 01:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35907 * 116.99686 * 2 1 4 4 C 1.38871 * 119.98016 * 359.97438 * 3 2 1 5 5 C 1.38248 * 120.24572 * 179.70401 * 4 3 2 6 6 C 1.37994 * 120.21772 * 0.59662 * 5 4 3 7 7 C 1.50698 * 120.02384 * 179.70183 * 6 5 4 8 8 N 1.46897 * 109.47340 * 104.38639 * 7 6 5 9 9 C 1.47955 * 110.99938 * 184.69812 * 8 7 6 10 10 C 1.53939 * 86.18270 * 137.57901 * 9 8 7 11 11 C 1.50701 * 113.73345 * 221.81181 * 10 9 8 12 12 H 1.08002 * 119.99973 * 358.10322 * 11 10 9 13 13 C 1.37874 * 119.99910 * 178.09565 * 11 10 9 14 14 N 1.31514 * 120.00190 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00022 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46856 * 89.99730 * 15 13 11 17 17 H 1.48501 * 109.47148 * 209.99603 * 15 13 11 18 18 H 1.48500 * 109.47048 * 329.99935 * 15 13 11 19 19 C 1.48307 * 111.00045 * 284.04806 * 8 7 6 20 20 C 1.39629 * 119.95495 * 359.42355 * 6 5 4 21 21 C 1.43201 * 120.12330 * 180.29821 * 20 6 5 22 22 N 5.84228 * 152.72083 * 0.02562 * 2 1 3 23 23 C 1.38438 * 119.98191 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.46759 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47492 * 299.99693 * 1 2 3 26 26 H 1.08999 * 109.47069 * 60.00646 * 1 2 3 27 27 H 1.07992 * 119.87586 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.88909 * 180.32019 * 5 4 3 29 29 H 1.08995 * 109.47220 * 344.37785 * 7 6 5 30 30 H 1.09001 * 109.47076 * 224.38349 * 7 6 5 31 31 H 1.09000 * 113.76264 * 23.25855 * 9 8 7 32 32 H 1.09008 * 113.85658 * 251.90694 * 9 8 7 33 33 H 1.08997 * 113.73423 * 90.63422 * 10 9 8 34 34 H 0.97001 * 120.00002 * 180.02562 * 14 13 11 35 35 H 1.08997 * 113.85880 * 108.14809 * 19 8 7 36 36 H 1.08992 * 113.75868 * 336.67885 * 19 8 7 37 37 H 1.08001 * 120.10526 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2891 2.3753 -0.0005 5 6 1.9110 3.6101 0.0056 6 6 3.2883 3.6940 -0.0001 7 6 3.9616 5.0423 -0.0001 8 7 4.4939 5.3238 1.3398 9 6 5.0641 6.6874 1.4080 10 6 4.3739 6.7962 2.7797 11 6 3.7143 8.1292 3.0228 12 1 3.7822 8.9090 2.2786 13 6 3.0240 8.3532 4.1951 14 7 2.4480 9.5163 4.4071 15 14 2.9070 7.0046 5.4824 16 1 4.0495 7.1189 6.4242 17 1 1.6323 7.1443 6.2312 18 1 2.9464 5.6785 4.8150 19 6 3.4078 5.7101 2.2728 20 6 4.0579 2.5289 0.0001 21 6 5.4875 2.6119 0.0007 22 7 6.6215 2.6777 0.0012 23 6 3.4285 1.2831 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 0.2108 2.3160 -0.0005 28 1 1.3168 4.5119 0.0104 29 1 3.2373 5.8100 -0.2721 30 1 4.7779 5.0407 -0.7224 31 1 4.6622 7.3695 0.6588 32 1 6.1527 6.7080 1.4613 33 1 4.9990 6.4734 3.6122 34 1 1.9627 9.6740 5.2320 35 1 3.1740 4.9486 3.0168 36 1 2.5226 6.1070 1.7761 37 1 4.0181 0.3782 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137698149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:27 Heat of formation + Delta-G solvation = 55.759299 kcal Electronic energy + Delta-G solvation = -20088.089166 eV Core-core repulsion = 17025.230348 eV Total energy + Delta-G solvation = -3062.858818 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.50817 -39.12355 -37.82100 -36.03652 -32.90824 -31.85005 -31.48548 -29.00511 -27.59339 -25.51989 -25.22384 -23.84565 -22.65946 -21.10195 -19.27217 -18.62945 -17.07124 -16.74652 -16.64620 -15.99922 -15.68742 -15.21318 -14.60904 -14.31230 -14.12378 -13.84448 -13.46908 -13.24909 -13.13439 -12.62248 -12.57314 -12.47240 -12.30364 -12.13497 -11.80251 -11.32673 -11.18132 -11.11014 -10.97651 -10.39275 -10.01605 -9.95538 -9.58082 -9.17683 -9.12791 -8.59804 -8.28480 -8.08763 -6.12709 -4.13165 0.67278 1.21795 2.73577 2.98191 3.07537 3.28050 3.36647 3.41018 3.81058 4.04153 4.40181 4.52625 4.64013 4.76616 4.81779 4.88070 4.91439 5.13118 5.16468 5.20662 5.31385 5.53849 5.71539 5.74717 5.85663 5.94629 6.07438 6.12602 6.27633 6.37957 6.41859 6.42429 6.48555 6.72719 6.95925 7.11107 7.34695 7.64318 7.67196 7.77613 8.46026 8.90098 9.50383 10.99792 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018490 B = 0.005141 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.003703 B = 5445.318237 C = 6304.273899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.119 3.881 4 C -0.178 4.178 5 C -0.072 4.072 6 C -0.054 4.054 7 C 0.052 3.948 8 N -0.485 5.485 9 C 0.014 3.986 10 C -0.001 4.001 11 C -0.514 4.514 12 H 0.074 0.926 13 C 0.075 3.925 14 N -0.899 5.899 15 Si 0.872 3.128 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.254 1.254 19 C -0.004 4.004 20 C 0.028 3.972 21 C 0.265 3.735 22 N -0.411 5.411 23 C -0.108 4.108 24 H 0.099 0.901 25 H 0.058 0.942 26 H 0.056 0.944 27 H 0.134 0.866 28 H 0.137 0.863 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.264 0.736 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 -17.169 -10.311 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.230 6.230 3 C 0.074 3.926 4 C -0.198 4.198 5 C -0.091 4.091 6 C -0.058 4.058 7 C -0.076 4.076 8 N -0.207 5.207 9 C -0.115 4.115 10 C -0.021 4.021 11 C -0.551 4.551 12 H 0.092 0.908 13 C -0.128 4.128 14 N -0.537 5.537 15 Si 0.699 3.301 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.178 1.178 19 C -0.133 4.133 20 C 0.024 3.976 21 C -0.050 4.050 22 N -0.086 5.086 23 C -0.130 4.130 24 H 0.118 0.882 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.154 0.846 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -3.833 -17.718 -10.061 20.733 hybrid contribution -1.500 0.188 0.530 1.602 sum -5.333 -17.531 -9.532 20.655 Atomic orbital electron populations 1.23085 0.78160 1.04019 1.01595 1.86065 1.21515 1.26512 1.88931 1.18663 0.91709 0.84425 0.97827 1.21418 1.00403 0.92046 1.05914 1.20866 0.93365 0.97639 0.97232 1.19837 0.93097 0.94182 0.98634 1.21626 0.98493 0.92319 0.95129 1.68697 1.20947 1.26366 1.04713 1.23877 0.99530 0.88176 0.99873 1.20731 0.93422 0.94924 0.93014 1.20970 1.32595 0.97314 1.04265 0.90823 1.24988 0.94720 0.95195 0.97855 1.69911 1.34909 1.22739 1.26131 0.86951 0.77499 0.83689 0.81978 1.20341 1.21535 1.17812 1.24519 0.94625 0.98575 0.95532 1.15483 0.84731 0.93075 1.04295 1.25283 0.92316 0.93477 0.93951 1.81176 1.12011 1.07395 1.08034 1.20243 0.91727 0.96949 1.04043 0.88222 0.92379 0.92498 0.84814 0.84558 0.92500 0.90580 0.91780 0.91165 0.93016 0.92618 0.91354 0.91520 0.84362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.11 10.49 -19.45 -0.20 -3.32 16 3 C 0.12 1.28 6.68 -39.27 -0.26 1.02 16 4 C -0.18 -1.79 9.03 -39.34 -0.36 -2.14 16 5 C -0.07 -0.84 9.65 -39.67 -0.38 -1.22 16 6 C -0.05 -0.73 5.13 -104.19 -0.53 -1.27 16 7 C 0.05 0.80 4.24 -4.98 -0.02 0.78 16 8 N -0.48 -9.03 6.12 -239.47 -1.47 -10.49 16 9 C 0.01 0.27 7.54 -2.76 -0.02 0.25 16 10 C 0.00 -0.03 2.88 -90.83 -0.26 -0.30 16 11 C -0.51 -13.92 9.33 -34.44 -0.32 -14.24 16 12 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 13 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 14 N -0.90 -26.81 13.96 55.43 0.77 -26.04 16 15 Si 0.87 20.92 27.08 -169.99 -4.60 16.32 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.25 -5.75 5.27 56.52 0.30 -5.45 16 19 C 0.00 -0.08 6.29 -2.56 -0.02 -0.09 16 20 C 0.03 0.37 5.73 -106.95 -0.61 -0.24 16 21 C 0.27 4.06 14.00 -22.47 -0.31 3.75 16 22 N -0.41 -7.05 18.54 41.84 0.78 -6.28 16 23 C -0.11 -1.25 9.69 -39.01 -0.38 -1.63 16 24 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 26 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 27 H 0.13 0.99 6.28 -52.49 -0.33 0.67 16 28 H 0.14 1.42 8.00 -52.49 -0.42 1.00 16 29 H 0.06 0.84 7.49 -51.93 -0.39 0.45 16 30 H 0.08 1.13 7.66 -51.93 -0.40 0.74 16 31 H 0.06 1.25 7.83 -51.93 -0.41 0.84 16 32 H 0.07 1.35 8.14 -51.92 -0.42 0.93 16 33 H 0.05 1.23 7.20 -51.93 -0.37 0.86 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.07 1.42 6.82 -51.93 -0.35 1.06 16 36 H 0.07 1.34 7.65 -51.93 -0.40 0.94 16 37 H 0.14 1.40 8.06 -52.49 -0.42 0.97 16 LS Contribution 316.10 15.07 4.76 4.76 Total: -1.00 -31.11 316.10 -7.34 -38.45 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.79 Total: -1.22 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -2.59 Total: -12.19 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: 0.08 Total: -42.81 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: -0.20 Total: -3.32 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.60 Total: 16.32 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -31.11 -7.34 -38.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137698149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.214 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds