Wall clock time and date at job start Mon Mar 30 2020 01:59:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35907 * 116.99686 * 2 1 4 4 C 1.38871 * 119.98016 * 359.97438 * 3 2 1 5 5 C 1.38248 * 120.24572 * 179.70401 * 4 3 2 6 6 C 1.37994 * 120.21772 * 0.59662 * 5 4 3 7 7 C 1.50698 * 120.02384 * 179.70183 * 6 5 4 8 8 N 1.46897 * 109.47340 * 104.38639 * 7 6 5 9 9 C 1.47955 * 110.99938 * 184.69812 * 8 7 6 10 10 C 1.53939 * 86.18270 * 137.57901 * 9 8 7 11 11 C 1.50701 * 113.73345 * 221.81181 * 10 9 8 12 12 H 1.08002 * 119.99973 * 358.10322 * 11 10 9 13 13 C 1.37874 * 119.99910 * 178.09565 * 11 10 9 14 14 N 1.31514 * 120.00190 * 180.02562 * 13 11 10 15 15 Si 1.86807 * 120.00022 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.46856 * 89.99730 * 15 13 11 17 17 H 1.48501 * 109.47148 * 209.99603 * 15 13 11 18 18 H 1.48500 * 109.47048 * 329.99935 * 15 13 11 19 19 C 1.48307 * 111.00045 * 284.04806 * 8 7 6 20 20 C 1.39629 * 119.95495 * 359.42355 * 6 5 4 21 21 C 1.43201 * 120.12330 * 180.29821 * 20 6 5 22 22 N 5.84228 * 152.72083 * 0.02562 * 2 1 3 23 23 C 1.38438 * 119.98191 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.46759 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47492 * 299.99693 * 1 2 3 26 26 H 1.08999 * 109.47069 * 60.00646 * 1 2 3 27 27 H 1.07992 * 119.87586 * 0.02562 * 4 3 2 28 28 H 1.08001 * 119.88909 * 180.32019 * 5 4 3 29 29 H 1.08995 * 109.47220 * 344.37785 * 7 6 5 30 30 H 1.09001 * 109.47076 * 224.38349 * 7 6 5 31 31 H 1.09000 * 113.76264 * 23.25855 * 9 8 7 32 32 H 1.09008 * 113.85658 * 251.90694 * 9 8 7 33 33 H 1.08997 * 113.73423 * 90.63422 * 10 9 8 34 34 H 0.97001 * 120.00002 * 180.02562 * 14 13 11 35 35 H 1.08997 * 113.85880 * 108.14809 * 19 8 7 36 36 H 1.08992 * 113.75868 * 336.67885 * 19 8 7 37 37 H 1.08001 * 120.10526 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2891 2.3753 -0.0005 5 6 1.9110 3.6101 0.0056 6 6 3.2883 3.6940 -0.0001 7 6 3.9616 5.0423 -0.0001 8 7 4.4939 5.3238 1.3398 9 6 5.0641 6.6874 1.4080 10 6 4.3739 6.7962 2.7797 11 6 3.7143 8.1292 3.0228 12 1 3.7822 8.9090 2.2786 13 6 3.0240 8.3532 4.1951 14 7 2.4480 9.5163 4.4071 15 14 2.9070 7.0046 5.4824 16 1 4.0495 7.1189 6.4242 17 1 1.6323 7.1443 6.2312 18 1 2.9464 5.6785 4.8150 19 6 3.4078 5.7101 2.2728 20 6 4.0579 2.5289 0.0001 21 6 5.4875 2.6119 0.0007 22 7 6.6215 2.6777 0.0012 23 6 3.4285 1.2831 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 0.2108 2.3160 -0.0005 28 1 1.3168 4.5119 0.0104 29 1 3.2373 5.8100 -0.2721 30 1 4.7779 5.0407 -0.7224 31 1 4.6622 7.3695 0.6588 32 1 6.1527 6.7080 1.4613 33 1 4.9990 6.4734 3.6122 34 1 1.9627 9.6740 5.2320 35 1 3.1740 4.9486 3.0168 36 1 2.5226 6.1070 1.7761 37 1 4.0181 0.3782 0.0005 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137698149.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:26 Heat of formation + Delta-G solvation = 34.759765 kcal Electronic energy + Delta-G solvation = -20088.999774 eV Core-core repulsion = 17025.230348 eV Total energy + Delta-G solvation = -3063.769426 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.43314 -40.46180 -38.83863 -37.17699 -34.79835 -33.18743 -32.40857 -30.32811 -28.45996 -26.97466 -26.80811 -24.77958 -24.02402 -22.27801 -20.43002 -20.05658 -19.07459 -17.59035 -17.53379 -16.95037 -16.76059 -16.57376 -16.10373 -15.64584 -15.22041 -15.03829 -14.78854 -14.69532 -14.25232 -14.14313 -13.84369 -13.53710 -13.42392 -13.27905 -12.99721 -12.84300 -12.69354 -12.08147 -11.94271 -11.89405 -11.78855 -11.64244 -11.29970 -11.11997 -10.67137 -10.02777 -9.66464 -9.15633 -8.27693 -6.32477 -0.26207 0.32959 1.38547 1.41637 1.53280 1.65188 1.96509 2.29784 2.38881 2.78058 3.01377 3.07009 3.26889 3.70926 3.76150 3.98204 4.13653 4.18131 4.25957 4.35159 4.48762 4.50913 4.53778 4.62217 4.69915 4.76483 4.82375 4.88414 4.90673 5.04835 5.06014 5.26415 5.35338 5.49492 5.50021 5.56214 5.66123 6.23851 6.30976 6.40155 6.49746 6.72996 7.34468 8.88240 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.018490 B = 0.005141 C = 0.004440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.003703 B = 5445.318237 C = 6304.273899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.123 3.877 4 C -0.166 4.166 5 C -0.073 4.073 6 C -0.070 4.070 7 C 0.054 3.946 8 N -0.484 5.484 9 C 0.020 3.980 10 C -0.016 4.016 11 C -0.514 4.514 12 H 0.035 0.965 13 C 0.020 3.980 14 N -0.948 5.948 15 Si 0.935 3.065 16 H -0.279 1.279 17 H -0.286 1.286 18 H -0.230 1.230 19 C 0.012 3.988 20 C 0.014 3.986 21 C 0.281 3.719 22 N -0.454 5.454 23 C -0.109 4.109 24 H 0.118 0.882 25 H 0.066 0.934 26 H 0.071 0.929 27 H 0.165 0.835 28 H 0.148 0.852 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.046 0.954 34 H 0.266 0.734 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.662 -19.835 -10.569 23.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.242 6.242 3 C 0.077 3.923 4 C -0.185 4.185 5 C -0.092 4.092 6 C -0.073 4.073 7 C -0.074 4.074 8 N -0.206 5.206 9 C -0.108 4.108 10 C -0.036 4.036 11 C -0.552 4.552 12 H 0.054 0.946 13 C -0.178 4.178 14 N -0.588 5.588 15 Si 0.759 3.241 16 H -0.205 1.205 17 H -0.212 1.212 18 H -0.153 1.153 19 C -0.117 4.117 20 C 0.010 3.990 21 C -0.034 4.034 22 N -0.130 5.130 23 C -0.130 4.130 24 H 0.137 0.863 25 H 0.084 0.916 26 H 0.090 0.910 27 H 0.182 0.818 28 H 0.166 0.834 29 H 0.082 0.918 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.512 -20.409 -10.343 23.535 hybrid contribution -1.050 0.994 0.509 1.533 sum -6.562 -19.415 -9.834 22.732 Atomic orbital electron populations 1.23419 0.76042 1.05796 1.02666 1.86069 1.23691 1.25928 1.88548 1.18744 0.91520 0.85219 0.96803 1.21711 1.01919 0.90995 1.03894 1.21023 0.92518 0.98866 0.96786 1.19702 0.93968 0.92952 1.00659 1.21609 0.98842 0.93897 0.93007 1.68634 1.20371 1.24959 1.06667 1.23760 0.99749 0.89249 0.98051 1.20750 0.94682 0.93660 0.94486 1.21177 1.32393 0.98340 1.03315 0.94644 1.25812 0.94430 0.97408 1.00132 1.70051 1.36534 1.25118 1.27077 0.85946 0.77298 0.81756 0.79115 1.20452 1.21237 1.15275 1.24263 0.94427 0.97145 0.95836 1.15517 0.83571 0.93920 1.05967 1.25664 0.92736 0.92276 0.92696 1.81179 1.13240 1.08738 1.09848 1.20354 0.92540 0.96579 1.03516 0.86347 0.91570 0.91040 0.81791 0.83396 0.91805 0.90520 0.91770 0.90665 0.93553 0.92524 0.91040 0.91277 0.83364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.81 113.37 1.11 1.23 16 2 O -0.33 -5.32 10.49 -92.50 -0.97 -6.29 16 3 C 0.12 2.25 6.68 22.47 0.15 2.40 16 4 C -0.17 -2.68 9.03 22.42 0.20 -2.48 16 5 C -0.07 -1.46 9.65 22.21 0.21 -1.25 16 6 C -0.07 -1.74 5.13 -19.59 -0.10 -1.84 16 7 C 0.05 1.58 4.24 85.56 0.36 1.94 16 8 N -0.48 -17.35 6.12 -911.54 -5.58 -22.93 16 9 C 0.02 0.81 7.54 86.41 0.65 1.46 16 10 C -0.02 -0.75 2.88 -10.89 -0.03 -0.78 16 11 C -0.51 -28.34 9.33 25.60 0.24 -28.10 16 12 H 0.04 2.16 8.06 -2.91 -0.02 2.14 16 13 C 0.02 1.12 5.47 84.65 0.46 1.58 16 14 N -0.95 -57.74 13.96 21.45 0.30 -57.44 16 15 Si 0.93 42.78 27.08 68.60 1.86 44.64 16 16 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 17 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 18 H -0.23 -9.52 5.27 99.48 0.52 -9.00 16 19 C 0.01 0.47 6.29 86.34 0.54 1.01 16 20 C 0.01 0.35 5.73 -21.37 -0.12 0.23 16 21 C 0.28 8.39 14.00 88.33 1.24 9.63 16 22 N -0.45 -15.51 18.54 19.00 0.35 -15.15 16 23 C -0.11 -2.26 9.69 22.64 0.22 -2.04 16 24 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.07 0.45 7.66 -2.39 -0.02 0.43 16 26 H 0.07 0.39 7.66 -2.39 -0.02 0.37 16 27 H 0.16 1.62 6.28 -2.91 -0.02 1.60 16 28 H 0.15 2.59 8.00 -2.91 -0.02 2.57 16 29 H 0.06 1.77 7.49 -2.39 -0.02 1.75 16 30 H 0.08 2.21 7.66 -2.39 -0.02 2.20 16 31 H 0.06 2.50 7.83 -2.39 -0.02 2.48 16 32 H 0.07 2.87 8.14 -2.38 -0.02 2.85 16 33 H 0.05 2.16 7.20 -2.39 -0.02 2.15 16 34 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.07 2.75 6.82 -2.39 -0.02 2.73 16 36 H 0.07 2.65 7.65 -2.39 -0.02 2.63 16 37 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 Total: -1.00 -67.95 316.10 2.00 -65.95 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.90 Total: 8.24 kcal Atomic # 6 Polarization: -22.15 SS G_CDS: 5.14 Total: -17.01 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -4.93 Total: -95.52 kcal Atomic # 8 Polarization: -5.32 SS G_CDS: -0.97 Total: -6.29 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.86 Total: 44.64 kcal Total: -67.95 2.00 -65.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137698149.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.710 kcal (2) G-P(sol) polarization free energy of solvation -67.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.951 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds