Wall clock time and date at job start Mon Mar 30 2020 01:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36831 * 125.06347 * 2 1 4 4 C 1.34242 * 109.92830 * 180.14700 * 3 2 1 5 5 C 1.46491 * 106.99712 * 359.60332 * 4 3 2 6 6 C 1.39630 * 134.02857 * 180.21673 * 5 4 3 7 7 C 1.36627 * 119.76400 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.73791 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.46822 * 269.99981 * 8 7 6 10 10 C 1.34778 * 119.99926 * 180.02562 * 9 8 7 11 11 O 1.21277 * 119.99824 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99782 * 179.97438 * 10 9 8 13 13 C 1.50699 * 109.46678 * 179.97438 * 12 10 9 14 14 H 1.07999 * 120.00340 * 359.97438 * 13 12 10 15 15 C 1.37883 * 119.99944 * 179.97438 * 13 12 10 16 16 N 1.31522 * 119.99577 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00363 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46884 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47108 * 119.99777 * 17 15 13 20 20 H 1.48501 * 109.47155 * 240.00266 * 17 15 13 21 21 C 1.38830 * 120.52420 * 0.03970 * 7 6 5 22 22 C 1.37746 * 120.67032 * 359.97438 * 21 7 6 23 23 C 1.37685 * 125.06129 * 179.69778 * 2 1 3 24 24 H 1.09004 * 109.47143 * 270.30271 * 1 2 3 25 25 H 1.09000 * 109.46732 * 30.29895 * 1 2 3 26 26 H 1.08999 * 109.47467 * 150.29898 * 1 2 3 27 27 H 1.07993 * 125.03787 * 0.02931 * 3 2 1 28 28 H 1.08002 * 126.50514 * 179.87275 * 4 3 2 29 29 H 1.07993 * 120.11544 * 0.02562 * 6 5 4 30 30 H 1.09002 * 109.47135 * 29.98968 * 8 7 6 31 31 H 1.08997 * 109.47525 * 149.99650 * 8 7 6 32 32 H 0.97007 * 120.00186 * 359.97438 * 9 8 7 33 33 H 1.09007 * 109.46999 * 299.99284 * 12 10 9 34 34 H 1.08997 * 109.47360 * 59.99350 * 12 10 9 35 35 H 0.97001 * 119.99727 * 179.97438 * 16 15 13 36 36 H 1.08004 * 119.66548 * 179.97438 * 21 7 6 37 37 H 1.08006 * 120.11165 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1200 0.0000 4 6 3.5469 0.7695 -0.0032 5 6 3.5945 -0.6946 0.0042 6 6 4.6295 -1.6319 0.0088 7 6 4.3361 -2.9663 0.0162 8 6 5.4535 -3.9774 0.0218 9 7 5.8156 -4.3126 -1.3576 10 6 6.7978 -5.2034 -1.5990 11 8 7.3822 -5.7270 -0.6743 12 6 7.1698 -5.5486 -3.0180 13 6 8.2874 -6.5596 -3.0125 14 1 8.6884 -6.9161 -2.0752 15 6 8.7979 -7.0294 -4.2040 16 7 8.3092 -6.5956 -5.3454 17 14 10.1827 -8.2832 -4.1972 18 1 10.5507 -8.6065 -2.7953 19 1 9.7355 -9.5184 -4.8896 20 1 11.3631 -7.7207 -4.9011 21 6 3.0166 -3.3981 0.0183 22 6 1.9803 -2.4907 0.0135 23 6 2.2559 -1.1270 0.0059 24 1 -0.3634 0.0054 1.0277 25 1 -0.3633 0.8873 -0.5185 26 1 -0.3634 -0.8926 -0.5092 27 1 1.8835 2.1354 0.0005 28 1 4.3938 1.4397 -0.0060 29 1 5.6582 -1.3033 0.0075 30 1 6.3201 -3.5583 0.5332 31 1 5.1259 -4.8782 0.5406 32 1 5.3479 -3.8940 -2.0973 33 1 6.3030 -5.9675 -3.5293 34 1 7.4976 -4.6480 -3.5371 35 1 8.6686 -6.9259 -6.1836 36 1 2.8005 -4.4563 0.0237 37 1 0.9572 -2.8366 0.0147 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:48 Heat of formation + Delta-G solvation = 17.597534 kcal Electronic energy + Delta-G solvation = -19318.589602 eV Core-core repulsion = 16254.075966 eV Total energy + Delta-G solvation = -3064.513636 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.43135 -38.73571 -37.39963 -33.89782 -33.04463 -32.85206 -30.78830 -29.33272 -28.69503 -26.89490 -25.14469 -23.18086 -22.62280 -20.76722 -20.40066 -19.54169 -17.30600 -16.53529 -16.30773 -16.00999 -15.57950 -15.07568 -14.87175 -14.40214 -14.22022 -14.04791 -13.70989 -13.32394 -13.10006 -12.88954 -12.56603 -12.50642 -12.23401 -12.03589 -11.50547 -11.28664 -11.08812 -10.88778 -10.68778 -10.55549 -9.89641 -9.77030 -9.18654 -8.68257 -8.41397 -8.31467 -8.17403 -7.74368 -6.00102 -3.99065 1.04908 1.46923 2.56448 2.59724 3.37480 3.44216 3.53170 3.70968 3.82408 4.29914 4.41471 4.53962 4.56181 4.60375 4.80367 4.89258 4.92440 5.06867 5.29408 5.38082 5.41047 5.44503 5.66994 5.75631 5.84388 5.98898 6.05751 6.31091 6.47800 6.62553 6.65914 6.72772 7.07104 7.11939 7.15139 7.28137 7.41159 8.02203 8.15383 8.54126 9.12520 9.33435 9.65863 11.12431 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039635 B = 0.002993 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.273715 B = 9353.166301 C = 9431.707984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.491 5.491 3 C 0.043 3.957 4 C -0.199 4.199 5 C -0.113 4.113 6 C -0.050 4.050 7 C -0.124 4.124 8 C 0.165 3.835 9 N -0.745 5.745 10 C 0.514 3.486 11 O -0.548 6.548 12 C 0.004 3.996 13 C -0.505 4.505 14 H 0.076 0.924 15 C 0.053 3.947 16 N -0.902 5.902 17 Si 0.900 3.100 18 H -0.270 1.270 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.078 4.078 22 C -0.133 4.133 23 C 0.098 3.902 24 H 0.067 0.933 25 H 0.081 0.919 26 H 0.080 0.920 27 H 0.166 0.834 28 H 0.147 0.853 29 H 0.125 0.875 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.397 0.603 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.260 0.740 36 H 0.128 0.872 37 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.081 16.465 10.163 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.176 5.176 3 C -0.081 4.081 4 C -0.225 4.225 5 C -0.117 4.117 6 C -0.069 4.069 7 C -0.126 4.126 8 C 0.041 3.959 9 N -0.399 5.399 10 C 0.304 3.696 11 O -0.424 6.424 12 C -0.035 4.035 13 C -0.544 4.544 14 H 0.094 0.906 15 C -0.147 4.147 16 N -0.542 5.542 17 Si 0.728 3.272 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.098 4.098 22 C -0.154 4.154 23 C -0.008 4.008 24 H 0.085 0.915 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.183 0.817 28 H 0.164 0.836 29 H 0.143 0.857 30 H 0.085 0.915 31 H 0.085 0.915 32 H 0.230 0.770 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.146 0.854 37 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -17.969 16.074 10.662 26.362 hybrid contribution 0.250 -0.266 -0.514 0.631 sum -17.720 15.808 10.148 25.824 Atomic orbital electron populations 1.21909 0.77386 1.04124 1.02799 1.43812 1.05756 1.04401 1.63590 1.21761 0.90527 0.90960 1.04859 1.21718 0.95978 0.92952 1.11804 1.19192 0.92069 0.93529 1.06924 1.20235 0.98191 0.91288 0.97167 1.19464 0.94423 0.93930 1.04749 1.19996 0.94490 0.95877 0.85530 1.46413 1.39761 1.46727 1.07013 1.22006 0.77074 0.76366 0.94183 1.90530 1.52549 1.52244 1.47111 1.19242 0.98697 0.98804 0.86739 1.21230 1.16903 1.22834 0.93401 0.90629 1.25021 0.97338 0.96991 0.95393 1.69980 1.42651 1.44303 0.97238 0.86385 0.81680 0.80899 0.78230 1.19474 1.21060 1.21055 1.20781 0.91376 0.99205 0.98396 1.19952 0.99344 0.89044 1.07068 1.18293 0.90167 0.88266 1.04068 0.91469 0.90034 0.90148 0.81658 0.83568 0.85724 0.91511 0.91493 0.76999 0.93503 0.93488 0.93033 0.85437 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 11.03 59.85 0.66 1.08 16 2 N -0.49 -4.58 3.18 -121.80 -0.39 -4.97 16 3 C 0.04 0.37 11.29 -16.73 -0.19 0.18 16 4 C -0.20 -2.08 11.08 -37.67 -0.42 -2.49 16 5 C -0.11 -1.42 6.37 -105.14 -0.67 -2.09 16 6 C -0.05 -0.65 9.67 -39.64 -0.38 -1.03 16 7 C -0.12 -1.65 5.21 -104.99 -0.55 -2.20 16 8 C 0.16 2.58 5.78 -5.19 -0.03 2.55 16 9 N -0.74 -13.46 5.55 -61.47 -0.34 -13.80 16 10 C 0.51 12.07 7.82 -10.98 -0.09 11.98 16 11 O -0.55 -14.68 15.46 5.56 0.09 -14.60 16 12 C 0.00 0.12 5.46 -29.03 -0.16 -0.04 16 13 C -0.51 -15.00 8.92 -34.44 -0.31 -15.31 16 14 H 0.08 2.34 6.75 -52.49 -0.35 1.99 16 15 C 0.05 1.55 5.46 -17.81 -0.10 1.45 16 16 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 17 Si 0.90 22.51 29.54 -169.99 -5.02 17.49 16 18 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 21 C -0.08 -0.94 9.66 -39.54 -0.38 -1.32 16 22 C -0.13 -1.48 9.97 -39.43 -0.39 -1.88 16 23 C 0.10 1.15 6.81 -83.99 -0.57 0.58 16 24 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 0.39 8.10 -51.93 -0.42 -0.03 16 27 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 28 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 29 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 30 H 0.07 1.08 8.08 -51.93 -0.42 0.66 16 31 H 0.07 1.07 8.08 -51.93 -0.42 0.65 16 32 H 0.40 6.39 8.46 -40.82 -0.35 6.05 16 33 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 34 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 36 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 37 H 0.12 1.02 8.06 -52.48 -0.42 0.60 16 LS Contribution 323.50 15.07 4.88 4.88 Total: -1.00 -35.18 323.50 -8.52 -43.70 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -4.90 Total: 2.04 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -3.57 Total: -8.54 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.01 Total: -44.97 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.09 Total: -14.60 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -35.18 -8.52 -43.70 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.301 kcal (2) G-P(sol) polarization free energy of solvation -35.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds