Wall clock time and date at job start Mon Mar 30 2020 01:50:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36831 * 125.06347 * 2 1 4 4 C 1.34242 * 109.92830 * 180.14700 * 3 2 1 5 5 C 1.46491 * 106.99712 * 359.60332 * 4 3 2 6 6 C 1.39630 * 134.02857 * 180.21673 * 5 4 3 7 7 C 1.36627 * 119.76400 * 179.97438 * 6 5 4 8 8 C 1.50699 * 119.73791 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.46822 * 269.99981 * 8 7 6 10 10 C 1.34778 * 119.99926 * 180.02562 * 9 8 7 11 11 O 1.21277 * 119.99824 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.99782 * 179.97438 * 10 9 8 13 13 C 1.50699 * 109.46678 * 179.97438 * 12 10 9 14 14 H 1.07999 * 120.00340 * 359.97438 * 13 12 10 15 15 C 1.37883 * 119.99944 * 179.97438 * 13 12 10 16 16 N 1.31522 * 119.99577 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 120.00363 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.46884 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47108 * 119.99777 * 17 15 13 20 20 H 1.48501 * 109.47155 * 240.00266 * 17 15 13 21 21 C 1.38830 * 120.52420 * 0.03970 * 7 6 5 22 22 C 1.37746 * 120.67032 * 359.97438 * 21 7 6 23 23 C 1.37685 * 125.06129 * 179.69778 * 2 1 3 24 24 H 1.09004 * 109.47143 * 270.30271 * 1 2 3 25 25 H 1.09000 * 109.46732 * 30.29895 * 1 2 3 26 26 H 1.08999 * 109.47467 * 150.29898 * 1 2 3 27 27 H 1.07993 * 125.03787 * 0.02931 * 3 2 1 28 28 H 1.08002 * 126.50514 * 179.87275 * 4 3 2 29 29 H 1.07993 * 120.11544 * 0.02562 * 6 5 4 30 30 H 1.09002 * 109.47135 * 29.98968 * 8 7 6 31 31 H 1.08997 * 109.47525 * 149.99650 * 8 7 6 32 32 H 0.97007 * 120.00186 * 359.97438 * 9 8 7 33 33 H 1.09007 * 109.46999 * 299.99284 * 12 10 9 34 34 H 1.08997 * 109.47360 * 59.99350 * 12 10 9 35 35 H 0.97001 * 119.99727 * 179.97438 * 16 15 13 36 36 H 1.08004 * 119.66548 * 179.97438 * 21 7 6 37 37 H 1.08006 * 120.11165 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2511 1.1200 0.0000 4 6 3.5469 0.7695 -0.0032 5 6 3.5945 -0.6946 0.0042 6 6 4.6295 -1.6319 0.0088 7 6 4.3361 -2.9663 0.0162 8 6 5.4535 -3.9774 0.0218 9 7 5.8156 -4.3126 -1.3576 10 6 6.7978 -5.2034 -1.5990 11 8 7.3822 -5.7270 -0.6743 12 6 7.1698 -5.5486 -3.0180 13 6 8.2874 -6.5596 -3.0125 14 1 8.6884 -6.9161 -2.0752 15 6 8.7979 -7.0294 -4.2040 16 7 8.3092 -6.5956 -5.3454 17 14 10.1827 -8.2832 -4.1972 18 1 10.5507 -8.6065 -2.7953 19 1 9.7355 -9.5184 -4.8896 20 1 11.3631 -7.7207 -4.9011 21 6 3.0166 -3.3981 0.0183 22 6 1.9803 -2.4907 0.0135 23 6 2.2559 -1.1270 0.0059 24 1 -0.3634 0.0054 1.0277 25 1 -0.3633 0.8873 -0.5185 26 1 -0.3634 -0.8926 -0.5092 27 1 1.8835 2.1354 0.0005 28 1 4.3938 1.4397 -0.0060 29 1 5.6582 -1.3033 0.0075 30 1 6.3201 -3.5583 0.5332 31 1 5.1259 -4.8782 0.5406 32 1 5.3479 -3.8940 -2.0973 33 1 6.3030 -5.9675 -3.5293 34 1 7.4976 -4.6480 -3.5371 35 1 8.6686 -6.9259 -6.1836 36 1 2.8005 -4.4563 0.0237 37 1 0.9572 -2.8366 0.0147 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189039.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:47 Heat of formation + Delta-G solvation = -4.546977 kcal Electronic energy + Delta-G solvation = -19319.549860 eV Core-core repulsion = 16254.075966 eV Total energy + Delta-G solvation = -3065.473894 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.21280 -40.44748 -38.49912 -35.40515 -35.06610 -33.75121 -32.04628 -30.80831 -29.96146 -27.80649 -26.36484 -25.01948 -23.52094 -21.75964 -21.33996 -21.13520 -18.52499 -18.08084 -17.82556 -17.14192 -16.84465 -16.42013 -16.20697 -16.13974 -15.54263 -14.97221 -14.83769 -14.45774 -14.13501 -14.01656 -13.83073 -13.70600 -13.49429 -13.08894 -13.03512 -12.79945 -12.55307 -12.46951 -12.13585 -12.03549 -11.78336 -11.41973 -10.67020 -10.61997 -10.50053 -9.96716 -9.10335 -8.55259 -8.24077 -6.31433 0.18358 0.51640 1.40716 1.40994 1.56628 1.82357 1.91253 1.96420 2.37134 2.54236 3.04293 3.10930 3.66729 3.79039 3.93605 4.02731 4.16797 4.36445 4.40965 4.48066 4.50332 4.63248 4.74496 4.79029 4.84486 4.87483 5.04204 5.09884 5.16725 5.27665 5.41986 5.56670 5.73073 5.75389 5.80956 5.81870 6.07188 6.25999 6.45008 6.72779 6.86007 7.34802 7.52982 8.88397 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.039635 B = 0.002993 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.273715 B = 9353.166301 C = 9431.707984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.491 5.491 3 C 0.060 3.940 4 C -0.230 4.230 5 C -0.137 4.137 6 C -0.062 4.062 7 C -0.132 4.132 8 C 0.169 3.831 9 N -0.722 5.722 10 C 0.518 3.482 11 O -0.586 6.586 12 C 0.008 3.992 13 C -0.536 4.536 14 H 0.055 0.945 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.966 3.034 18 H -0.275 1.275 19 H -0.271 1.271 20 H -0.272 1.272 21 C -0.090 4.090 22 C -0.127 4.127 23 C 0.082 3.918 24 H 0.079 0.921 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.207 0.793 28 H 0.157 0.843 29 H 0.122 0.878 30 H 0.060 0.940 31 H 0.066 0.934 32 H 0.408 0.592 33 H 0.042 0.958 34 H 0.041 0.959 35 H 0.267 0.733 36 H 0.136 0.864 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.869 17.661 10.187 28.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.174 5.174 3 C -0.065 4.065 4 C -0.255 4.255 5 C -0.142 4.142 6 C -0.081 4.081 7 C -0.134 4.134 8 C 0.046 3.954 9 N -0.375 5.375 10 C 0.308 3.692 11 O -0.466 6.466 12 C -0.032 4.032 13 C -0.574 4.574 14 H 0.074 0.926 15 C -0.190 4.190 16 N -0.566 5.566 17 Si 0.791 3.209 18 H -0.199 1.199 19 H -0.197 1.197 20 H -0.197 1.197 21 C -0.110 4.110 22 C -0.148 4.148 23 C -0.025 4.025 24 H 0.098 0.902 25 H 0.124 0.876 26 H 0.103 0.897 27 H 0.223 0.777 28 H 0.174 0.826 29 H 0.140 0.860 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.243 0.757 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.076 0.924 36 H 0.154 0.846 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.821 17.315 10.675 28.401 hybrid contribution 0.664 -0.484 -0.512 0.968 sum -19.156 16.830 10.163 27.450 Atomic orbital electron populations 1.22228 0.74883 1.05679 1.04130 1.44173 1.07330 1.03717 1.62218 1.22407 0.89879 0.92360 1.01856 1.21995 0.97588 0.92118 1.13757 1.19534 0.92536 0.94809 1.07289 1.20280 0.98516 0.91500 0.97805 1.19210 0.94141 0.93319 1.06712 1.20040 0.95283 0.96577 0.83459 1.46148 1.37774 1.44643 1.08902 1.21464 0.77978 0.77154 0.92644 1.90506 1.54332 1.54122 1.47613 1.19082 0.97693 0.97817 0.88569 1.21415 1.18541 1.24416 0.93012 0.92647 1.25826 0.99636 0.98718 0.94852 1.70051 1.43642 1.45086 0.97791 0.85378 0.78794 0.78704 0.78047 1.19942 1.19662 1.19720 1.20888 0.91048 0.99993 0.99063 1.20191 1.00249 0.88760 1.05554 1.18530 0.90485 0.89261 1.04224 0.90209 0.87561 0.89654 0.77664 0.82561 0.86020 0.92159 0.91615 0.75652 0.94005 0.94138 0.92395 0.84583 0.83887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.50 11.03 127.77 1.41 1.91 16 2 N -0.49 -7.74 3.18 -539.27 -1.71 -9.45 16 3 C 0.06 0.85 11.29 83.00 0.94 1.79 16 4 C -0.23 -4.49 11.08 23.51 0.26 -4.23 16 5 C -0.14 -3.39 6.37 -20.20 -0.13 -3.51 16 6 C -0.06 -1.64 9.67 22.23 0.22 -1.42 16 7 C -0.13 -3.55 5.21 -20.10 -0.10 -3.65 16 8 C 0.17 5.41 5.78 85.63 0.49 5.91 16 9 N -0.72 -26.56 5.55 -466.79 -2.59 -29.15 16 10 C 0.52 25.03 7.82 87.66 0.69 25.72 16 11 O -0.59 -32.38 15.46 -3.02 -0.05 -32.43 16 12 C 0.01 0.42 5.46 29.10 0.16 0.58 16 13 C -0.54 -32.58 8.92 25.60 0.23 -32.35 16 14 H 0.06 3.54 6.75 -2.91 -0.02 3.52 16 15 C 0.01 0.47 5.46 84.65 0.46 0.93 16 16 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 17 Si 0.97 46.32 29.54 68.60 2.03 48.35 16 18 H -0.27 -13.27 7.11 99.48 0.71 -12.56 16 19 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 21 C -0.09 -2.11 9.66 22.30 0.22 -1.90 16 22 C -0.13 -2.62 9.97 22.37 0.22 -2.39 16 23 C 0.08 1.80 6.81 39.03 0.27 2.06 16 24 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 25 H 0.11 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.08 0.54 8.10 -2.39 -0.02 0.52 16 27 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 28 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 29 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 30 H 0.06 2.01 8.08 -2.39 -0.02 1.99 16 31 H 0.07 2.13 8.08 -2.39 -0.02 2.12 16 32 H 0.41 13.25 8.46 -92.70 -0.78 12.47 16 33 H 0.04 2.26 8.14 -2.38 -0.02 2.24 16 34 H 0.04 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.14 2.86 8.06 -2.91 -0.02 2.83 16 37 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 Total: -1.00 -76.49 323.50 3.58 -72.92 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: 0.29 Total: 15.44 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: 5.32 Total: -10.56 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -4.02 Total: -93.71 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.05 Total: -32.43 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 2.03 Total: 48.35 kcal Total: -76.49 3.58 -72.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189039.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.369 kcal (2) G-P(sol) polarization free energy of solvation -76.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds