Wall clock time and date at job start Mon Mar 30 2020 02:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00256 * 2 1 4 4 H 1.48504 * 109.46569 * 269.99591 * 3 2 1 5 5 H 1.48492 * 109.47005 * 29.99081 * 3 2 1 6 6 H 1.48492 * 109.47277 * 149.99396 * 3 2 1 7 7 C 1.37877 * 119.99912 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.84906 * 0.02562 * 7 2 1 9 9 C 1.53235 * 108.53821 * 231.32348 * 8 7 2 10 10 C 1.52956 * 109.40544 * 305.37624 * 9 8 7 11 11 H 1.09002 * 109.41315 * 303.48993 * 10 9 8 12 12 N 1.46502 * 109.41326 * 183.62933 * 10 9 8 13 13 C 1.37833 * 119.99963 * 154.85366 * 12 10 9 14 14 C 1.36868 * 120.52425 * 0.02562 * 13 12 10 15 15 C 1.39486 * 119.37052 * 179.97438 * 14 13 12 16 16 N 1.31506 * 120.38819 * 359.97438 * 15 14 13 17 17 C 1.34079 * 120.99786 * 0.02562 * 16 15 14 18 18 C 1.38807 * 132.54897 * 180.02562 * 17 16 15 19 19 C 1.38798 * 107.63188 * 179.39872 * 18 17 16 20 20 N 1.31310 * 108.96276 * 0.49197 * 19 18 17 21 21 N 1.36965 * 120.52269 * 179.72427 * 13 12 10 22 22 C 1.52960 * 109.81680 * 63.59897 * 10 9 8 23 23 C 1.51267 * 120.84982 * 179.97438 * 7 2 1 24 24 H 0.97000 * 119.99728 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.62200 * 111.61454 * 8 7 2 26 26 H 1.08997 * 109.62933 * 351.04542 * 8 7 2 27 27 H 1.08995 * 109.48153 * 185.39409 * 9 8 7 28 28 H 1.09004 * 109.48984 * 65.36241 * 9 8 7 29 29 H 0.97003 * 120.00260 * 334.86467 * 12 10 9 30 30 H 1.08005 * 120.31648 * 359.95158 * 14 13 12 31 31 H 1.08001 * 119.80842 * 179.97438 * 15 14 13 32 32 H 1.08001 * 126.18074 * 359.95725 * 18 17 16 33 33 H 1.08003 * 125.52240 * 180.02562 * 19 18 17 34 34 H 1.08999 * 109.48541 * 56.37865 * 22 10 9 35 35 H 1.08999 * 109.48238 * 176.42091 * 22 10 9 36 36 H 1.09003 * 109.62401 * 248.38501 * 23 7 2 37 37 H 1.08995 * 109.62877 * 8.76509 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 6 1.2676 -2.5151 0.0005 9 6 1.8227 -3.3826 1.1352 10 6 3.3397 -3.5071 0.9842 11 1 3.5738 -3.9124 -0.0003 12 7 3.8598 -4.4062 2.0172 13 6 5.0421 -5.0837 1.8097 14 6 5.7392 -4.9239 0.6428 15 6 6.9333 -5.6208 0.4583 16 7 7.3866 -6.4238 1.3960 17 6 6.7161 -6.5916 2.5449 18 6 6.9653 -7.3602 3.6735 19 6 5.9319 -7.1349 4.5723 20 7 5.0808 -6.2881 4.0404 21 7 5.5410 -5.9226 2.7705 22 6 3.9905 -2.1311 1.1354 23 6 3.5170 -1.2165 0.0000 24 1 -0.4850 0.8401 -0.0004 25 1 1.4199 -3.0193 -0.9538 26 1 0.2035 -2.3409 0.1599 27 1 1.3704 -4.3733 1.0900 28 1 1.5896 -2.9199 2.0942 29 1 3.3720 -4.5250 2.8473 30 1 5.3681 -4.2647 -0.1281 31 1 7.4890 -5.5004 -0.4599 32 1 7.8149 -8.0088 3.8283 33 1 5.8385 -7.5888 5.5478 34 1 3.7061 -1.6978 2.0943 35 1 5.0746 -2.2347 1.0904 36 1 3.8770 -1.6008 -0.9544 37 1 3.8982 -0.2073 0.1556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157050256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:20 Heat of formation + Delta-G solvation = 107.518904 kcal Electronic energy + Delta-G solvation = -20559.950432 eV Core-core repulsion = 17531.628830 eV Total energy + Delta-G solvation = -3028.321602 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.11170 -38.73186 -37.31564 -35.30237 -32.78475 -31.30182 -30.58270 -29.85798 -28.61722 -27.34211 -23.95539 -23.41342 -22.15672 -21.64471 -20.73026 -19.79299 -18.39520 -17.09771 -16.72058 -16.11435 -15.96080 -15.22989 -14.65257 -14.52728 -14.00449 -13.65278 -13.43689 -13.08133 -12.77465 -12.61576 -12.36953 -12.28171 -12.06064 -11.63415 -11.23049 -11.07982 -10.89416 -10.82031 -10.39824 -10.19356 -9.73806 -9.64990 -9.48067 -9.17633 -9.05877 -8.67212 -8.58041 -7.31099 -6.25115 -4.18033 0.96641 1.17662 1.97879 2.75688 3.16159 3.19173 3.25895 3.27220 3.68709 4.15298 4.25233 4.44070 4.94360 5.03270 5.09558 5.26704 5.46251 5.52335 5.57868 5.72659 5.82135 5.87019 6.03842 6.21359 6.33421 6.42897 6.47068 6.56724 6.61367 6.61577 6.78745 6.91612 7.05455 7.19878 7.35209 7.48635 7.52678 7.63528 7.71903 7.95141 8.19470 8.79694 9.38657 10.84070 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033202 B = 0.004421 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.119532 B = 6331.942017 C = 6623.076620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.079 3.921 3 Si 0.887 3.113 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.495 4.495 8 C 0.015 3.985 9 C -0.115 4.115 10 C 0.156 3.844 11 H 0.083 0.917 12 N -0.698 5.698 13 C 0.491 3.509 14 C -0.342 4.342 15 C 0.222 3.778 16 N -0.531 5.531 17 C 0.303 3.697 18 C -0.298 4.298 19 C 0.094 3.906 20 N -0.334 5.334 21 N -0.347 5.347 22 C -0.120 4.120 23 C -0.018 4.018 24 H 0.266 0.734 25 H 0.008 0.992 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.410 0.590 30 H 0.163 0.837 31 H 0.173 0.827 32 H 0.156 0.844 33 H 0.192 0.808 34 H 0.056 0.944 35 H 0.039 0.961 36 H 0.020 0.980 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.852 -9.456 3.274 14.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.125 4.125 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.190 1.190 7 C -0.514 4.514 8 C -0.023 4.023 9 C -0.153 4.153 10 C 0.054 3.946 11 H 0.101 0.899 12 N -0.323 5.323 13 C 0.266 3.734 14 C -0.374 4.374 15 C 0.045 3.955 16 N -0.249 5.249 17 C 0.075 3.925 18 C -0.329 4.329 19 C -0.086 4.086 20 N -0.157 5.157 21 N -0.124 5.124 22 C -0.159 4.159 23 C -0.056 4.056 24 H 0.076 0.924 25 H 0.027 0.973 26 H 0.082 0.918 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.246 0.754 30 H 0.181 0.819 31 H 0.190 0.810 32 H 0.174 0.826 33 H 0.209 0.791 34 H 0.075 0.925 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.204 -9.123 3.460 13.413 hybrid contribution 0.178 0.900 0.458 1.026 sum 9.382 -8.223 3.918 13.076 Atomic orbital electron populations 1.69819 1.06204 1.27210 1.49116 1.24853 0.94725 0.98692 0.94222 0.86671 0.79958 0.83171 0.78637 1.20229 1.21557 1.18957 1.19997 0.89284 0.91435 1.50638 1.19343 0.98971 0.92663 0.91341 1.21974 0.91251 0.99140 1.02975 1.21443 0.95670 0.88547 0.88960 0.89891 1.45459 1.19917 1.44553 1.22408 1.17794 0.86481 0.83594 0.85510 1.21086 1.01811 1.15672 0.98871 1.22919 0.90692 0.85966 0.95934 1.68315 1.32331 1.23678 1.00561 1.20784 0.83505 0.93722 0.94520 1.20805 1.06177 1.12493 0.93472 1.23707 0.91392 0.93977 0.99511 1.77662 1.24183 1.22992 0.90840 1.47168 1.19452 1.32357 1.13463 1.22050 0.97203 0.94785 1.01840 1.19803 0.96753 0.95663 0.93357 0.92383 0.97344 0.91812 0.94250 0.92365 0.75414 0.81929 0.81016 0.82596 0.79124 0.92491 0.94183 0.96116 0.94244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.15 12.73 55.43 0.71 -23.45 16 2 C 0.08 2.01 5.46 -17.82 -0.10 1.92 16 3 Si 0.89 19.89 27.53 -169.99 -4.68 15.21 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -5.72 6.11 56.52 0.35 -5.38 16 7 C -0.49 -11.91 5.51 -98.92 -0.55 -12.45 16 8 C 0.01 0.33 5.97 -27.48 -0.16 0.17 16 9 C -0.11 -2.15 5.40 -26.63 -0.14 -2.29 16 10 C 0.16 2.61 2.04 -67.97 -0.14 2.47 16 11 H 0.08 1.34 6.48 -51.93 -0.34 1.01 16 12 N -0.70 -10.82 5.19 -53.76 -0.28 -11.10 16 13 C 0.49 7.65 7.70 -152.91 -1.18 6.47 16 14 C -0.34 -4.68 8.78 -39.61 -0.35 -5.03 16 15 C 0.22 2.80 11.25 -17.23 -0.19 2.61 16 16 N -0.53 -8.02 10.49 -12.36 -0.13 -8.15 16 17 C 0.30 4.83 7.92 -155.52 -1.23 3.60 16 18 C -0.30 -4.08 10.92 -39.16 -0.43 -4.51 16 19 C 0.09 1.20 11.95 -17.57 -0.21 0.99 16 20 N -0.33 -5.24 12.58 30.48 0.38 -4.86 16 21 N -0.35 -5.65 3.92 -11.59 -0.05 -5.69 16 22 C -0.12 -2.18 5.41 -26.60 -0.14 -2.32 16 23 C -0.02 -0.37 5.60 -27.45 -0.15 -0.52 16 24 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 26 H 0.06 1.60 7.07 -51.93 -0.37 1.24 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.41 6.30 8.64 -40.82 -0.35 5.95 16 30 H 0.16 2.04 6.13 -52.48 -0.32 1.72 16 31 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 32 H 0.16 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.19 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.04 0.67 7.70 -51.93 -0.40 0.27 16 36 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.04 0.84 4.59 -51.93 -0.24 0.60 16 LS Contribution 300.47 15.07 4.53 4.53 Total: -1.00 -28.34 300.47 -9.08 -37.42 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -4.59 Total: 4.98 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -4.98 Total: -8.90 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.63 Total: -53.24 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.68 Total: 15.21 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -28.34 -9.08 -37.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.943 kcal (2) G-P(sol) polarization free energy of solvation -28.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds