Wall clock time and date at job start Mon Mar 30 2020 02:02:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00256 * 2 1 4 4 H 1.48504 * 109.46569 * 269.99591 * 3 2 1 5 5 H 1.48492 * 109.47005 * 29.99081 * 3 2 1 6 6 H 1.48492 * 109.47277 * 149.99396 * 3 2 1 7 7 C 1.37877 * 119.99912 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.84906 * 0.02562 * 7 2 1 9 9 C 1.53235 * 108.53821 * 231.32348 * 8 7 2 10 10 C 1.52956 * 109.40544 * 305.37624 * 9 8 7 11 11 H 1.09002 * 109.41315 * 303.48993 * 10 9 8 12 12 N 1.46502 * 109.41326 * 183.62933 * 10 9 8 13 13 C 1.37833 * 119.99963 * 154.85366 * 12 10 9 14 14 C 1.36868 * 120.52425 * 0.02562 * 13 12 10 15 15 C 1.39486 * 119.37052 * 179.97438 * 14 13 12 16 16 N 1.31506 * 120.38819 * 359.97438 * 15 14 13 17 17 C 1.34079 * 120.99786 * 0.02562 * 16 15 14 18 18 C 1.38807 * 132.54897 * 180.02562 * 17 16 15 19 19 C 1.38798 * 107.63188 * 179.39872 * 18 17 16 20 20 N 1.31310 * 108.96276 * 0.49197 * 19 18 17 21 21 N 1.36965 * 120.52269 * 179.72427 * 13 12 10 22 22 C 1.52960 * 109.81680 * 63.59897 * 10 9 8 23 23 C 1.51267 * 120.84982 * 179.97438 * 7 2 1 24 24 H 0.97000 * 119.99728 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.62200 * 111.61454 * 8 7 2 26 26 H 1.08997 * 109.62933 * 351.04542 * 8 7 2 27 27 H 1.08995 * 109.48153 * 185.39409 * 9 8 7 28 28 H 1.09004 * 109.48984 * 65.36241 * 9 8 7 29 29 H 0.97003 * 120.00260 * 334.86467 * 12 10 9 30 30 H 1.08005 * 120.31648 * 359.95158 * 14 13 12 31 31 H 1.08001 * 119.80842 * 179.97438 * 15 14 13 32 32 H 1.08001 * 126.18074 * 359.95725 * 18 17 16 33 33 H 1.08003 * 125.52240 * 180.02562 * 19 18 17 34 34 H 1.08999 * 109.48541 * 56.37865 * 22 10 9 35 35 H 1.08999 * 109.48238 * 176.42091 * 22 10 9 36 36 H 1.09003 * 109.62401 * 248.38501 * 23 7 2 37 37 H 1.08995 * 109.62877 * 8.76509 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 -1.4002 5 1 1.4466 2.6527 0.6998 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 6 1.2676 -2.5151 0.0005 9 6 1.8227 -3.3826 1.1352 10 6 3.3397 -3.5071 0.9842 11 1 3.5738 -3.9124 -0.0003 12 7 3.8598 -4.4062 2.0172 13 6 5.0421 -5.0837 1.8097 14 6 5.7392 -4.9239 0.6428 15 6 6.9333 -5.6208 0.4583 16 7 7.3866 -6.4238 1.3960 17 6 6.7161 -6.5916 2.5449 18 6 6.9653 -7.3602 3.6735 19 6 5.9319 -7.1349 4.5723 20 7 5.0808 -6.2881 4.0404 21 7 5.5410 -5.9226 2.7705 22 6 3.9905 -2.1311 1.1354 23 6 3.5170 -1.2165 0.0000 24 1 -0.4850 0.8401 -0.0004 25 1 1.4199 -3.0193 -0.9538 26 1 0.2035 -2.3409 0.1599 27 1 1.3704 -4.3733 1.0900 28 1 1.5896 -2.9199 2.0942 29 1 3.3720 -4.5250 2.8473 30 1 5.3681 -4.2647 -0.1281 31 1 7.4890 -5.5004 -0.4599 32 1 7.8149 -8.0088 3.8283 33 1 5.8385 -7.5888 5.5478 34 1 3.7061 -1.6978 2.0943 35 1 5.0746 -2.2347 1.0904 36 1 3.8770 -1.6008 -0.9544 37 1 3.8982 -0.2073 0.1556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157050256.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:20 Heat of formation + Delta-G solvation = 91.689198 kcal Electronic energy + Delta-G solvation = -20560.636860 eV Core-core repulsion = 17531.628830 eV Total energy + Delta-G solvation = -3029.008029 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.17764 -40.00608 -38.50408 -36.68881 -34.33337 -32.71766 -31.79636 -31.34837 -29.72102 -28.90963 -25.14418 -24.54981 -23.66087 -23.20415 -21.87590 -21.29293 -19.58397 -18.18709 -18.11594 -17.48373 -17.07715 -16.53710 -16.41986 -15.62231 -15.18377 -15.02003 -14.77344 -14.47111 -14.20488 -14.07935 -13.69452 -13.53218 -13.41802 -13.14714 -12.83304 -12.59973 -12.39362 -12.17366 -11.94702 -11.80373 -11.36331 -10.95340 -10.74194 -10.69076 -10.56769 -10.51047 -9.90955 -8.41709 -8.17612 -6.12056 -0.07541 0.09618 0.90313 1.39691 1.43416 1.49753 1.75251 1.98968 2.40561 2.63279 3.11258 3.19599 3.43767 3.84562 3.95790 4.07211 4.13741 4.35621 4.45806 4.56678 4.65698 4.74793 4.79322 4.91297 4.91588 5.00132 5.02166 5.10620 5.21064 5.27094 5.54041 5.56553 5.57929 5.63003 5.73474 5.78852 5.87226 6.21249 6.31953 6.60900 6.89886 6.95424 7.46632 8.92981 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033202 B = 0.004421 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.119532 B = 6331.942017 C = 6623.076620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.023 3.977 3 Si 0.937 3.063 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.249 1.249 7 C -0.498 4.498 8 C 0.011 3.989 9 C -0.104 4.104 10 C 0.173 3.827 11 H 0.096 0.904 12 N -0.700 5.700 13 C 0.470 3.530 14 C -0.338 4.338 15 C 0.226 3.774 16 N -0.546 5.546 17 C 0.274 3.726 18 C -0.302 4.302 19 C 0.101 3.899 20 N -0.365 5.365 21 N -0.358 5.358 22 C -0.112 4.112 23 C -0.020 4.020 24 H 0.262 0.738 25 H 0.012 0.988 26 H 0.028 0.972 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.408 0.592 30 H 0.177 0.823 31 H 0.215 0.785 32 H 0.177 0.823 33 H 0.232 0.768 34 H 0.041 0.959 35 H 0.062 0.938 36 H 0.037 0.963 37 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.430 -10.547 3.268 16.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.176 4.176 3 Si 0.764 3.236 4 H -0.198 1.198 5 H -0.226 1.226 6 H -0.173 1.173 7 C -0.517 4.517 8 C -0.027 4.027 9 C -0.143 4.143 10 C 0.070 3.930 11 H 0.114 0.886 12 N -0.326 5.326 13 C 0.247 3.753 14 C -0.370 4.370 15 C 0.050 3.950 16 N -0.264 5.264 17 C 0.046 3.954 18 C -0.333 4.333 19 C -0.078 4.078 20 N -0.189 5.189 21 N -0.136 5.136 22 C -0.151 4.151 23 C -0.058 4.058 24 H 0.071 0.929 25 H 0.030 0.970 26 H 0.047 0.953 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.244 0.756 30 H 0.194 0.806 31 H 0.231 0.769 32 H 0.194 0.806 33 H 0.249 0.751 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 11.824 -10.236 3.455 16.016 hybrid contribution -0.561 1.105 0.457 1.321 sum 11.263 -9.131 3.913 15.018 Atomic orbital electron populations 1.69965 1.07735 1.27425 1.52062 1.25594 0.95256 1.01794 0.94939 0.85868 0.79318 0.79758 0.78686 1.19849 1.22578 1.17336 1.20659 0.91388 0.91636 1.48049 1.19287 0.97125 0.93322 0.92963 1.21733 0.93131 0.98912 1.00521 1.21084 0.93739 0.88294 0.89921 0.88618 1.45112 1.20438 1.44972 1.22063 1.18087 0.86717 0.84179 0.86282 1.21392 1.01820 1.15430 0.98320 1.23599 0.90377 0.84442 0.96623 1.68382 1.32679 1.24502 1.00847 1.21308 0.83896 0.94612 0.95575 1.21238 1.06872 1.12170 0.92985 1.24408 0.90121 0.92617 1.00641 1.77627 1.25631 1.24394 0.91203 1.47297 1.19745 1.32777 1.13759 1.21914 0.98557 0.94831 0.99808 1.19827 0.94362 0.96415 0.95208 0.92916 0.96959 0.95347 0.92711 0.93686 0.75577 0.80580 0.76898 0.80606 0.75140 0.94025 0.91970 0.94421 0.94554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.58 12.73 21.45 0.27 -52.31 16 2 C 0.02 1.17 5.46 84.66 0.46 1.63 16 3 Si 0.94 40.91 27.53 68.60 1.89 42.80 16 4 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 6 H -0.25 -10.13 6.11 99.48 0.61 -9.52 16 7 C -0.50 -23.88 5.51 -16.17 -0.09 -23.97 16 8 C 0.01 0.50 5.97 30.11 0.18 0.68 16 9 C -0.10 -3.85 5.40 30.66 0.17 -3.68 16 10 C 0.17 5.42 2.04 44.96 0.09 5.52 16 11 H 0.10 2.81 6.48 -2.39 -0.02 2.79 16 12 N -0.70 -20.56 5.19 -323.99 -1.68 -22.24 16 13 C 0.47 13.73 7.70 131.50 1.01 14.74 16 14 C -0.34 -8.22 8.78 22.25 0.20 -8.02 16 15 C 0.23 4.97 11.25 85.04 0.96 5.92 16 16 N -0.55 -15.15 10.49 -193.01 -2.02 -17.18 16 17 C 0.27 8.21 7.92 133.12 1.05 9.26 16 18 C -0.30 -7.58 10.92 22.54 0.25 -7.34 16 19 C 0.10 2.35 11.95 84.90 1.01 3.36 16 20 N -0.37 -10.93 12.58 -57.47 -0.72 -11.65 16 21 N -0.36 -11.09 3.92 -190.59 -0.75 -11.84 16 22 C -0.11 -3.82 5.41 30.68 0.17 -3.66 16 23 C -0.02 -0.80 5.60 30.13 0.17 -0.63 16 24 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 25 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.03 1.47 7.07 -2.39 -0.02 1.45 16 27 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.41 12.21 8.64 -92.71 -0.80 11.40 16 30 H 0.18 3.73 6.13 -2.91 -0.02 3.72 16 31 H 0.21 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.18 3.52 8.06 -2.91 -0.02 3.49 16 33 H 0.23 3.04 8.06 -2.91 -0.02 3.01 16 34 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.06 1.86 7.70 -2.39 -0.02 1.85 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.04 1.45 4.59 -2.39 -0.01 1.44 16 Total: -1.00 -62.36 300.47 2.81 -59.55 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.20 Total: 19.04 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 5.62 Total: -6.17 kcal Atomic # 7 Polarization: -110.32 SS G_CDS: -4.90 Total: -115.22 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.89 Total: 42.80 kcal Total: -62.36 2.81 -59.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157050256.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.239 kcal (2) G-P(sol) polarization free energy of solvation -62.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds