Wall clock time and date at job start Mon Mar 30 2020 02:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99748 * 2 1 4 4 H 1.48500 * 109.47432 * 240.00315 * 3 2 1 5 5 H 1.48503 * 109.47107 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46862 * 120.00085 * 3 2 1 7 7 C 1.37880 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99472 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00381 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47256 * 180.02562 * 9 7 2 11 11 C 1.38288 * 119.92401 * 90.00539 * 10 9 7 12 12 C 1.38104 * 120.07273 * 180.02562 * 11 10 9 13 13 C 1.38910 * 119.92768 * 359.97438 * 12 11 10 14 14 N 1.39677 * 120.07382 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99512 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.46852 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47396 * 180.02562 * 16 15 14 18 18 C 1.35308 * 125.86944 * 124.99861 * 17 16 15 19 19 C 1.35347 * 106.17713 * 180.02562 * 18 17 16 20 20 N 1.33774 * 106.49812 * 0.02562 * 19 18 17 21 21 N 1.28637 * 108.88333 * 0.02562 * 20 19 18 22 22 C 1.38909 * 119.84772 * 0.25008 * 13 12 11 23 23 C 1.38109 * 119.92597 * 359.49704 * 22 13 12 24 24 H 0.96998 * 120.00063 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46445 * 60.00110 * 9 7 2 26 26 H 1.09000 * 109.47385 * 300.01025 * 9 7 2 27 27 H 1.08003 * 119.96067 * 359.97438 * 11 10 9 28 28 H 1.08005 * 120.03566 * 179.97438 * 12 11 10 29 29 H 0.96999 * 119.99942 * 0.02562 * 14 13 12 30 30 H 1.09001 * 109.46944 * 60.00440 * 15 14 13 31 31 H 1.08993 * 109.47647 * 299.99912 * 15 14 13 32 32 H 1.09001 * 109.46828 * 60.00563 * 16 15 14 33 33 H 1.08993 * 109.47081 * 300.00453 * 16 15 14 34 34 H 1.07997 * 126.91159 * 0.02959 * 18 17 16 35 35 H 1.08002 * 126.75518 * 179.97438 * 19 18 17 36 36 H 1.07999 * 120.03302 * 179.72401 * 22 13 12 37 37 H 1.08002 * 119.96334 * 180.24890 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6788 -4.1689 1.1980 12 6 3.5767 -5.2182 1.2016 13 6 4.0291 -5.7473 -0.0005 14 7 4.9377 -6.8082 -0.0004 15 6 5.4133 -7.3652 -1.2692 16 6 6.3925 -8.5072 -0.9896 17 7 6.8686 -9.0638 -2.2583 18 6 8.1629 -9.1939 -2.6309 19 6 8.1459 -9.7488 -3.8653 20 7 6.8590 -9.9282 -4.1835 21 7 6.1276 -9.5114 -3.2109 22 6 3.5804 -5.2150 -1.2025 23 6 2.6785 -4.1691 -1.1990 24 1 -0.4850 0.8400 0.0004 25 1 0.6243 -2.5566 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.3268 -3.7568 2.1322 28 1 3.9266 -5.6271 2.1380 29 1 5.2531 -7.1766 0.8396 30 1 5.9177 -6.5865 -1.8414 31 1 4.5658 -7.7443 -1.8401 32 1 5.8884 -9.2859 -0.4172 33 1 7.2399 -8.1276 -0.4189 34 1 9.0341 -8.9118 -2.0585 35 1 9.0028 -9.9971 -4.4740 36 1 3.9337 -5.6211 -2.1389 37 1 2.3261 -3.7575 -2.1332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161926465.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:23 Heat of formation + Delta-G solvation = 123.330701 kcal Electronic energy + Delta-G solvation = -19051.229038 eV Core-core repulsion = 16023.593087 eV Total energy + Delta-G solvation = -3027.635951 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.57023 -39.04080 -36.70586 -34.64421 -32.98257 -31.38513 -30.96891 -30.24632 -28.94137 -26.16853 -24.49564 -23.03068 -22.81415 -22.15582 -21.24177 -20.07906 -18.17626 -17.05444 -16.54607 -16.24243 -15.80720 -15.43029 -15.12854 -14.85094 -14.35242 -14.18287 -13.59830 -13.21273 -13.07142 -12.78646 -12.49501 -12.38319 -12.00318 -11.78270 -11.28048 -11.22492 -11.21222 -10.66682 -10.55915 -10.49295 -10.14449 -9.87380 -9.73663 -9.44438 -9.09981 -8.38341 -8.28856 -6.89319 -5.98803 -4.03299 1.23628 1.84185 2.06996 2.27205 2.28611 3.33589 3.37699 3.40829 3.48961 3.88584 4.17138 4.21597 4.42129 4.55139 4.62570 4.67071 4.87022 5.16767 5.31326 5.34115 5.44799 5.47865 5.53063 5.81271 5.95647 6.06615 6.15893 6.27144 6.33599 6.66269 6.77102 7.24752 7.26803 7.29689 7.57983 7.70554 7.91752 7.95002 7.96541 8.17725 8.39201 9.02173 9.60119 11.09892 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032174 B = 0.002845 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.052451 B = 9838.718255 C =10121.192911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.510 4.510 8 H 0.055 0.945 9 C 0.052 3.948 10 C -0.078 4.078 11 C -0.081 4.081 12 C -0.188 4.188 13 C 0.177 3.823 14 N -0.757 5.757 15 C 0.122 3.878 16 C 0.107 3.893 17 N -0.289 5.289 18 C -0.049 4.049 19 C -0.053 4.053 20 N -0.271 5.271 21 N -0.080 5.080 22 C -0.190 4.190 23 C -0.081 4.081 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.026 0.974 27 H 0.118 0.882 28 H 0.109 0.891 29 H 0.395 0.605 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.191 0.809 35 H 0.190 0.810 36 H 0.108 0.892 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.457 -18.265 -0.303 24.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.548 4.548 8 H 0.074 0.926 9 C 0.015 3.985 10 C -0.080 4.080 11 C -0.100 4.100 12 C -0.210 4.210 13 C 0.079 3.921 14 N -0.392 5.392 15 C -0.004 4.004 16 C -0.015 4.015 17 N -0.083 5.083 18 C -0.199 4.199 19 C -0.210 4.210 20 N -0.137 5.137 21 N -0.060 5.060 22 C -0.213 4.213 23 C -0.100 4.100 24 H 0.071 0.929 25 H 0.044 0.956 26 H 0.044 0.956 27 H 0.136 0.864 28 H 0.127 0.873 29 H 0.229 0.771 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.208 0.792 35 H 0.207 0.793 36 H 0.126 0.874 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 14.867 -18.422 -0.963 23.693 hybrid contribution 1.867 1.087 0.819 2.310 sum 16.735 -17.335 -0.144 24.095 Atomic orbital electron populations 1.69950 1.06009 1.26813 1.50699 1.25021 0.94868 0.99186 0.95349 0.86624 0.79546 0.82991 0.78661 1.20222 1.21276 1.20242 1.21078 0.92987 0.90088 1.50674 0.92631 1.18259 0.92512 0.89617 0.98079 1.20504 0.98776 0.96931 0.91785 1.20850 0.96101 0.94718 0.98340 1.20446 1.03881 1.01430 0.95219 1.17493 0.91531 0.88937 0.94164 1.44023 1.51078 1.38258 1.05863 1.21284 0.96975 0.93821 0.88358 1.22206 1.00715 0.97832 0.80773 1.47333 1.05434 1.40336 1.15157 1.23736 0.88671 1.08068 0.99469 1.23666 0.96462 1.05000 0.95845 1.75163 1.02401 1.17193 1.18930 1.78385 1.20394 1.13753 0.93432 1.20543 1.03797 1.01437 0.95481 1.20875 0.96000 0.94735 0.98368 0.92861 0.95603 0.95606 0.86406 0.87270 0.77130 0.91833 0.90665 0.87586 0.87018 0.79172 0.79253 0.87370 0.86484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.70 13.29 55.43 0.74 -25.97 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.51 -14.41 9.09 -34.44 -0.31 -14.73 16 8 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 9 C 0.05 1.36 5.10 -29.04 -0.15 1.21 16 10 C -0.08 -1.72 5.07 -104.59 -0.53 -2.25 16 11 C -0.08 -1.57 9.69 -39.61 -0.38 -1.96 16 12 C -0.19 -3.01 9.90 -39.38 -0.39 -3.40 16 13 C 0.18 2.68 6.65 -83.79 -0.56 2.12 16 14 N -0.76 -7.98 5.73 -58.63 -0.34 -8.32 16 15 C 0.12 1.13 5.04 -4.04 -0.02 1.10 16 16 C 0.11 0.63 6.57 -4.04 -0.03 0.61 16 17 N -0.29 -2.47 3.44 -61.26 -0.21 -2.68 16 18 C -0.05 -0.32 11.57 -17.05 -0.20 -0.52 16 19 C -0.05 -0.43 12.05 -17.74 -0.21 -0.65 16 20 N -0.27 -3.33 12.41 30.24 0.38 -2.96 16 21 N -0.08 -0.97 12.91 60.35 0.78 -0.19 16 22 C -0.19 -3.22 9.31 -39.38 -0.37 -3.59 16 23 C -0.08 -1.61 9.69 -39.61 -0.38 -1.99 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.03 0.71 8.08 -51.93 -0.42 0.29 16 26 H 0.03 0.70 8.08 -51.93 -0.42 0.28 16 27 H 0.12 2.21 8.06 -52.48 -0.42 1.78 16 28 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 29 H 0.39 3.10 8.49 -40.82 -0.35 2.76 16 30 H 0.06 0.66 7.94 -51.93 -0.41 0.24 16 31 H 0.08 0.83 7.94 -51.93 -0.41 0.42 16 32 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.11 0.34 8.07 -51.93 -0.42 -0.08 16 34 H 0.19 0.45 8.06 -52.49 -0.42 0.03 16 35 H 0.19 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.11 1.64 6.73 -52.49 -0.35 1.28 16 37 H 0.12 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 323.64 15.07 4.88 4.88 Total: -1.00 -34.01 323.64 -7.29 -41.30 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -4.86 Total: -0.24 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -3.63 Total: -22.50 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 1.34 Total: -40.11 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -34.01 -7.29 -41.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161926465.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.628 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds