Wall clock time and date at job start Mon Mar 30 2020 02:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 119.99748 * 2 1 4 4 H 1.48500 * 109.47432 * 240.00315 * 3 2 1 5 5 H 1.48503 * 109.47107 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46862 * 120.00085 * 3 2 1 7 7 C 1.37880 * 120.00022 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99472 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00381 * 359.97438 * 7 2 1 10 10 C 1.50695 * 109.47256 * 180.02562 * 9 7 2 11 11 C 1.38288 * 119.92401 * 90.00539 * 10 9 7 12 12 C 1.38104 * 120.07273 * 180.02562 * 11 10 9 13 13 C 1.38910 * 119.92768 * 359.97438 * 12 11 10 14 14 N 1.39677 * 120.07382 * 179.97438 * 13 12 11 15 15 C 1.46499 * 119.99512 * 179.97438 * 14 13 12 16 16 C 1.53005 * 109.46852 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47396 * 180.02562 * 16 15 14 18 18 C 1.35308 * 125.86944 * 124.99861 * 17 16 15 19 19 C 1.35347 * 106.17713 * 180.02562 * 18 17 16 20 20 N 1.33774 * 106.49812 * 0.02562 * 19 18 17 21 21 N 1.28637 * 108.88333 * 0.02562 * 20 19 18 22 22 C 1.38909 * 119.84772 * 0.25008 * 13 12 11 23 23 C 1.38109 * 119.92597 * 359.49704 * 22 13 12 24 24 H 0.96998 * 120.00063 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46445 * 60.00110 * 9 7 2 26 26 H 1.09000 * 109.47385 * 300.01025 * 9 7 2 27 27 H 1.08003 * 119.96067 * 359.97438 * 11 10 9 28 28 H 1.08005 * 120.03566 * 179.97438 * 12 11 10 29 29 H 0.96999 * 119.99942 * 0.02562 * 14 13 12 30 30 H 1.09001 * 109.46944 * 60.00440 * 15 14 13 31 31 H 1.08993 * 109.47647 * 299.99912 * 15 14 13 32 32 H 1.09001 * 109.46828 * 60.00563 * 16 15 14 33 33 H 1.08993 * 109.47081 * 300.00453 * 16 15 14 34 34 H 1.07997 * 126.91159 * 0.02959 * 18 17 16 35 35 H 1.08002 * 126.75518 * 179.97438 * 19 18 17 36 36 H 1.07999 * 120.03302 * 179.72401 * 22 13 12 37 37 H 1.08002 * 119.96334 * 180.24890 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6788 -4.1689 1.1980 12 6 3.5767 -5.2182 1.2016 13 6 4.0291 -5.7473 -0.0005 14 7 4.9377 -6.8082 -0.0004 15 6 5.4133 -7.3652 -1.2692 16 6 6.3925 -8.5072 -0.9896 17 7 6.8686 -9.0638 -2.2583 18 6 8.1629 -9.1939 -2.6309 19 6 8.1459 -9.7488 -3.8653 20 7 6.8590 -9.9282 -4.1835 21 7 6.1276 -9.5114 -3.2109 22 6 3.5804 -5.2150 -1.2025 23 6 2.6785 -4.1691 -1.1990 24 1 -0.4850 0.8400 0.0004 25 1 0.6243 -2.5566 -0.8903 26 1 0.6248 -2.5571 0.8896 27 1 2.3268 -3.7568 2.1322 28 1 3.9266 -5.6271 2.1380 29 1 5.2531 -7.1766 0.8396 30 1 5.9177 -6.5865 -1.8414 31 1 4.5658 -7.7443 -1.8401 32 1 5.8884 -9.2859 -0.4172 33 1 7.2399 -8.1276 -0.4189 34 1 9.0341 -8.9118 -2.0585 35 1 9.0028 -9.9971 -4.4740 36 1 3.9337 -5.6211 -2.1389 37 1 2.3261 -3.7575 -2.1332 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161926465.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:22 Heat of formation + Delta-G solvation = 100.469341 kcal Electronic energy + Delta-G solvation = -19052.220381 eV Core-core repulsion = 16023.593087 eV Total energy + Delta-G solvation = -3028.627294 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -44.18648 -40.36179 -37.68138 -35.75227 -34.80463 -32.41137 -31.95390 -31.67863 -30.13695 -27.75140 -25.51987 -24.60560 -23.62660 -23.24145 -22.11030 -21.55208 -18.91611 -18.47656 -17.84973 -17.43811 -16.83163 -16.57571 -16.15494 -15.78009 -15.70417 -15.16265 -14.80900 -14.50987 -14.48029 -14.17542 -13.83581 -13.34144 -13.29946 -13.19370 -12.86003 -12.53440 -12.51463 -12.41504 -11.88412 -11.66468 -11.63047 -11.38073 -11.14176 -10.64900 -10.58355 -10.32927 -9.71182 -8.33709 -8.01333 -6.30949 0.64301 0.65555 0.84048 1.31586 1.39462 1.42605 1.50875 1.64439 2.41083 2.59757 3.12258 3.12425 3.38357 3.65096 3.77604 4.06382 4.14590 4.20498 4.25930 4.34505 4.48837 4.51333 4.63552 4.69213 4.75797 4.87850 4.97543 5.17504 5.28364 5.34238 5.38509 5.51925 5.64607 5.68334 5.79234 5.94386 6.21275 6.22272 6.47106 6.82338 6.92278 7.37387 7.52701 8.91476 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032174 B = 0.002845 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.052451 B = 9838.718255 C =10121.192911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.527 4.527 8 H 0.054 0.946 9 C 0.062 3.938 10 C -0.119 4.119 11 C -0.090 4.090 12 C -0.179 4.179 13 C 0.197 3.803 14 N -0.736 5.736 15 C 0.122 3.878 16 C 0.111 3.889 17 N -0.289 5.289 18 C -0.028 4.028 19 C -0.069 4.069 20 N -0.316 5.316 21 N -0.129 5.129 22 C -0.195 4.195 23 C -0.094 4.094 24 H 0.265 0.735 25 H -0.005 1.005 26 H 0.000 1.000 27 H 0.115 0.885 28 H 0.149 0.851 29 H 0.414 0.586 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.121 0.879 33 H 0.154 0.846 34 H 0.239 0.761 35 H 0.217 0.783 36 H 0.124 0.876 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.275 -19.360 1.055 28.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.025 3.975 10 C -0.120 4.120 11 C -0.109 4.109 12 C -0.201 4.201 13 C 0.096 3.904 14 N -0.371 5.371 15 C -0.004 4.004 16 C -0.010 4.010 17 N -0.083 5.083 18 C -0.179 4.179 19 C -0.227 4.227 20 N -0.181 5.181 21 N -0.108 5.108 22 C -0.217 4.217 23 C -0.112 4.112 24 H 0.074 0.926 25 H 0.013 0.987 26 H 0.018 0.982 27 H 0.133 0.867 28 H 0.167 0.833 29 H 0.252 0.748 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.139 0.861 33 H 0.171 0.829 34 H 0.255 0.745 35 H 0.233 0.767 36 H 0.142 0.858 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 18.699 -19.567 0.406 27.068 hybrid contribution 0.786 1.284 0.393 1.556 sum 19.484 -18.282 0.799 26.731 Atomic orbital electron populations 1.70087 1.07728 1.27921 1.51561 1.25974 0.95788 1.03199 0.94728 0.85492 0.78289 0.78058 0.79170 1.19392 1.20591 1.19054 1.21418 0.93054 0.91440 1.50566 0.92815 1.17992 0.92857 0.91441 0.95220 1.20156 1.00437 0.97547 0.93901 1.20887 0.97031 0.95883 0.97086 1.20697 1.02345 0.99931 0.97170 1.17544 0.90777 0.88954 0.93142 1.43941 1.49195 1.36354 1.07584 1.21256 0.97109 0.94771 0.87271 1.22364 1.01644 0.96886 0.80114 1.47556 1.06061 1.39548 1.15132 1.24490 0.89021 1.05564 0.98858 1.24299 0.95933 1.05202 0.97221 1.75092 1.04444 1.18540 1.20043 1.78329 1.21618 1.16187 0.94707 1.20641 1.03212 1.00673 0.97211 1.20810 0.97207 0.96038 0.97195 0.92646 0.98705 0.98196 0.86726 0.83311 0.74817 0.92576 0.92754 0.86117 0.82857 0.74461 0.76676 0.85768 0.87746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.64 13.29 21.45 0.28 -57.35 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 7 C -0.53 -30.97 9.09 25.60 0.23 -30.74 16 8 H 0.05 3.10 7.74 -2.91 -0.02 3.07 16 9 C 0.06 3.45 5.10 29.10 0.15 3.60 16 10 C -0.12 -5.42 5.07 -19.84 -0.10 -5.52 16 11 C -0.09 -3.49 9.69 22.25 0.22 -3.27 16 12 C -0.18 -5.27 9.90 22.40 0.22 -5.04 16 13 C 0.20 5.44 6.65 38.21 0.25 5.70 16 14 N -0.74 -12.45 5.73 -339.42 -1.95 -14.40 16 15 C 0.12 1.87 5.04 86.38 0.44 2.31 16 16 C 0.11 0.83 6.57 86.38 0.57 1.40 16 17 N -0.29 -4.08 3.44 -347.74 -1.20 -5.27 16 18 C -0.03 -0.26 11.57 83.49 0.97 0.71 16 19 C -0.07 -0.98 12.05 83.73 1.01 0.03 16 20 N -0.32 -7.62 12.41 -58.26 -0.72 -8.35 16 21 N -0.13 -3.03 12.91 37.02 0.48 -2.56 16 22 C -0.19 -6.43 9.31 22.40 0.21 -6.23 16 23 C -0.09 -3.86 9.69 22.25 0.22 -3.64 16 24 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 25 H -0.01 -0.32 8.08 -2.39 -0.02 -0.34 16 26 H 0.00 -0.02 8.08 -2.39 -0.02 -0.04 16 27 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 28 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 29 H 0.41 4.20 8.49 -92.71 -0.79 3.42 16 30 H 0.06 0.99 7.94 -2.39 -0.02 0.98 16 31 H 0.05 1.11 7.94 -2.39 -0.02 1.09 16 32 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.15 -0.07 8.07 -2.39 -0.02 -0.09 16 34 H 0.24 -0.36 8.06 -2.91 -0.02 -0.38 16 35 H 0.22 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.12 3.64 6.73 -2.91 -0.02 3.62 16 37 H 0.10 4.39 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -79.79 323.64 4.05 -75.74 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 0.29 Total: 5.32 kcal Atomic # 6 Polarization: -45.04 SS G_CDS: 4.84 Total: -40.21 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -3.10 Total: -87.92 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -79.79 4.05 -75.74 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161926465.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.212 kcal (2) G-P(sol) polarization free energy of solvation -79.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds