Wall clock time and date at job start Mon Mar 30 2020 01:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35935 * 117.00254 * 2 1 4 4 C 1.39358 * 119.83976 * 0.02562 * 3 2 1 5 5 C 1.38182 * 120.54550 * 179.97438 * 4 3 2 6 6 C 1.38525 * 120.22205 * 0.02562 * 5 4 3 7 7 N 1.39582 * 120.15873 * 180.02562 * 6 5 4 8 8 C 1.36630 * 125.67047 * 293.41784 * 7 6 5 9 9 C 1.34838 * 108.19402 * 180.02562 * 8 7 6 10 10 C 1.41001 * 107.47838 * 0.02562 * 9 8 7 11 11 C 1.34838 * 107.47104 * 359.73222 * 10 9 8 12 12 C 1.50705 * 125.90112 * 180.29578 * 11 10 9 13 13 N 1.46906 * 109.47209 * 95.15345 * 12 11 10 14 14 C 1.41401 * 119.67604 * 359.97438 * 6 5 4 15 15 C 1.41101 * 120.26265 * 180.27287 * 14 6 5 16 16 H 1.07994 * 120.00138 * 334.79159 * 15 14 6 17 17 C 1.39949 * 119.99617 * 154.78592 * 15 14 6 18 18 N 1.30848 * 120.00337 * 342.00764 * 17 15 14 19 19 Si 1.86797 * 119.99711 * 162.00943 * 17 15 14 20 20 H 1.48505 * 109.47290 * 90.00194 * 19 17 15 21 21 H 1.48504 * 109.46958 * 209.99926 * 19 17 15 22 22 H 1.48497 * 109.47239 * 329.99807 * 19 17 15 23 23 C 1.37906 * 119.84321 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47418 * 300.00561 * 1 2 3 25 25 H 1.09003 * 109.46628 * 59.99713 * 1 2 3 26 26 H 1.08994 * 109.47385 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.72769 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.88397 * 179.97438 * 5 4 3 29 29 H 1.08003 * 125.90526 * 0.03403 * 8 7 6 30 30 H 1.08003 * 126.26080 * 180.02562 * 9 8 7 31 31 H 1.07995 * 126.26280 * 180.02562 * 10 9 8 32 32 H 1.08997 * 109.47315 * 215.15822 * 12 11 10 33 33 H 1.09006 * 109.46695 * 335.15907 * 12 11 10 34 34 H 1.00893 * 110.99494 * 57.74229 * 13 12 11 35 35 H 1.00893 * 110.99883 * 181.69491 * 13 12 11 36 36 H 0.96996 * 120.00336 * 180.02562 * 18 17 15 37 37 H 1.08007 * 120.11830 * 0.04450 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2840 2.3778 0.0005 5 6 1.8961 3.6166 0.0011 6 6 3.2781 3.7115 0.0006 7 7 3.8951 4.9635 0.0016 8 6 3.8511 5.8743 -1.0159 9 6 4.5647 6.9562 -0.6437 10 6 5.0687 6.7067 0.6493 11 6 4.6398 5.4839 1.0221 12 6 4.9332 4.8071 2.3362 13 7 3.8269 5.0525 3.2712 14 6 4.0607 2.5337 0.0000 15 6 5.4693 2.6159 0.0053 16 1 5.9605 3.4932 -0.3888 17 6 6.2298 1.5605 0.5213 18 7 5.6713 0.6733 1.3044 19 14 8.0422 1.4183 0.0922 20 1 8.8480 2.1608 1.0946 21 1 8.4414 -0.0121 0.0976 22 1 8.2781 1.9929 -1.2566 23 6 3.4235 1.2795 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2058 2.3132 0.0014 28 1 1.2950 4.5139 0.0011 29 1 3.3341 5.7493 -1.9558 30 1 4.7214 7.8503 -1.2289 31 1 5.6818 7.3748 1.2358 32 1 5.0425 3.7345 2.1761 33 1 5.8570 5.2083 2.7532 34 1 2.9525 4.7225 2.8911 35 1 4.0125 4.6318 4.1693 36 1 6.1985 -0.0579 1.6624 37 1 4.0111 0.3733 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167592801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:39 Heat of formation + Delta-G solvation = 30.655686 kcal Electronic energy + Delta-G solvation = -21115.380005 eV Core-core repulsion = 18051.432613 eV Total energy + Delta-G solvation = -3063.947392 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.58605 -38.79971 -36.44803 -34.01461 -33.69569 -31.46966 -30.03509 -28.24806 -28.08214 -26.11856 -25.35753 -23.47467 -21.69685 -21.06014 -19.54291 -18.36473 -17.92533 -16.65086 -16.32471 -15.54159 -15.01948 -14.96907 -14.88799 -14.07027 -13.63461 -13.36421 -13.20159 -13.18155 -12.67677 -12.17783 -11.89745 -11.78129 -11.51791 -11.44862 -11.32802 -11.28468 -11.20966 -11.02264 -10.71804 -10.31433 -10.15267 -9.82263 -9.36442 -8.14542 -7.91322 -7.74517 -7.18993 -7.15994 -6.89372 -4.69020 2.44598 2.58077 2.96006 2.98517 3.05811 3.23422 3.75803 3.81296 4.04803 4.18799 4.33032 5.25006 5.38196 5.52122 5.59651 5.75496 5.78561 5.86174 5.93464 6.11789 6.15426 6.26826 6.44689 6.51561 6.62527 6.76514 6.93577 7.09069 7.12080 7.13066 7.30948 7.36073 7.63392 7.64696 7.72035 7.86279 7.98535 8.09268 8.24778 8.44842 8.47667 8.54560 8.82165 9.86638 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.009694 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.481425 B = 2887.583027 C = 4307.870492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.327 6.327 3 C 0.139 3.861 4 C -0.312 4.312 5 C -0.040 4.040 6 C -0.058 4.058 7 N -0.346 5.346 8 C -0.017 4.017 9 C -0.217 4.217 10 C -0.210 4.210 11 C 0.050 3.950 12 C 0.123 3.877 13 N -0.845 5.845 14 C 0.148 3.852 15 C -0.437 4.437 16 H 0.087 0.913 17 C 0.078 3.922 18 N -0.772 5.772 19 Si 0.908 3.092 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.189 4.189 24 H 0.046 0.954 25 H 0.046 0.954 26 H 0.085 0.915 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.147 0.853 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.339 0.661 35 H 0.334 0.666 36 H 0.287 0.713 37 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 1.107 0.017 3.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.241 6.241 3 C 0.095 3.905 4 C -0.332 4.332 5 C -0.060 4.060 6 C -0.148 4.148 7 N -0.014 5.014 8 C -0.148 4.148 9 C -0.242 4.242 10 C -0.235 4.235 11 C -0.063 4.063 12 C -0.007 4.007 13 N -0.374 5.374 14 C 0.143 3.857 15 C -0.464 4.464 16 H 0.105 0.895 17 C -0.144 4.144 18 N -0.395 5.395 19 Si 0.731 3.269 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.181 1.181 23 C -0.210 4.210 24 H 0.065 0.935 25 H 0.064 0.936 26 H 0.103 0.897 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.165 0.835 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.151 0.849 35 H 0.145 0.855 36 H 0.098 0.902 37 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.924 1.139 0.080 3.139 hybrid contribution 0.354 -0.957 -0.231 1.046 sum -2.570 0.182 -0.152 2.581 Atomic orbital electron populations 1.22796 0.80454 1.02126 1.00644 1.86029 1.19754 1.28764 1.89595 1.18976 0.92408 0.82653 0.96505 1.20304 0.97667 0.91839 1.23426 1.20286 0.92513 0.96074 0.97109 1.17553 0.90574 0.83042 1.23660 1.40859 1.37306 1.11364 1.11898 1.21754 1.07332 0.91315 0.94443 1.20615 1.06427 0.99236 0.97953 1.20432 1.08618 0.96823 0.97624 1.20137 1.00555 0.94491 0.91079 1.20271 0.93367 0.99620 0.87442 1.58864 1.05592 1.66999 1.05934 1.17197 0.92968 0.88560 0.86933 1.19545 0.90736 1.02625 1.33530 0.89515 1.25996 1.01739 0.94126 0.92490 1.69826 1.38882 1.10650 1.20159 0.86282 0.81281 0.78533 0.80781 1.19005 1.19805 1.18089 1.20442 0.89453 0.98655 1.12446 0.93512 0.93562 0.89699 0.87940 0.88358 0.83521 0.85934 0.85960 0.91625 0.90753 0.84906 0.85508 0.90238 0.85137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 9.81 101.05 0.99 1.52 16 2 O -0.33 -6.74 10.49 -19.54 -0.20 -6.95 16 3 C 0.14 3.14 6.67 -39.29 -0.26 2.88 16 4 C -0.31 -6.51 9.03 -39.19 -0.35 -6.86 16 5 C -0.04 -0.87 9.89 -39.50 -0.39 -1.26 16 6 C -0.06 -1.33 5.37 -83.02 -0.45 -1.77 16 7 N -0.35 -7.60 2.22 -56.25 -0.12 -7.73 16 8 C -0.02 -0.35 11.33 -16.62 -0.19 -0.54 16 9 C -0.22 -4.18 10.86 -39.74 -0.43 -4.61 16 10 C -0.21 -4.23 10.76 -39.74 -0.43 -4.65 16 11 C 0.05 1.08 5.49 -81.66 -0.45 0.63 16 12 C 0.12 2.48 6.82 -4.97 -0.03 2.45 16 13 N -0.85 -15.27 9.60 -11.40 -0.11 -15.38 16 14 C 0.15 3.64 5.09 -106.69 -0.54 3.10 16 15 C -0.44 -10.76 6.56 -37.86 -0.25 -11.00 16 16 H 0.09 2.21 7.33 -52.49 -0.38 1.83 16 17 C 0.08 1.81 5.13 -17.33 -0.09 1.72 16 18 N -0.77 -18.36 11.00 55.55 0.61 -17.74 16 19 Si 0.91 17.87 29.60 -169.99 -5.03 12.84 16 20 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 23 C -0.19 -4.69 8.60 -38.78 -0.33 -5.02 16 24 H 0.05 0.66 7.65 -51.93 -0.40 0.26 16 25 H 0.05 0.64 7.65 -51.93 -0.40 0.25 16 26 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.10 1.86 6.26 -52.48 -0.33 1.54 16 28 H 0.10 1.94 8.06 -52.49 -0.42 1.52 16 29 H 0.15 2.67 8.06 -52.48 -0.42 2.24 16 30 H 0.12 2.01 8.06 -52.48 -0.42 1.59 16 31 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 32 H 0.07 1.50 5.89 -51.93 -0.31 1.20 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 34 H 0.34 6.45 9.00 -39.30 -0.35 6.09 16 35 H 0.33 5.22 9.08 -39.30 -0.36 4.87 16 36 H 0.29 6.22 8.30 -40.82 -0.34 5.89 16 37 H 0.13 3.40 6.21 -52.48 -0.33 3.07 16 LS Contribution 311.52 15.07 4.69 4.69 Total: -1.00 -26.45 311.52 -7.89 -34.34 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -4.52 Total: 19.36 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: -3.21 Total: -23.43 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.38 Total: -40.85 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.20 Total: -6.95 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.45 -7.89 -34.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167592801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.997 kcal (2) G-P(sol) polarization free energy of solvation -26.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds