Wall clock time and date at job start Mon Mar 30 2020 01:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35935 * 117.00254 * 2 1 4 4 C 1.39358 * 119.83976 * 0.02562 * 3 2 1 5 5 C 1.38182 * 120.54550 * 179.97438 * 4 3 2 6 6 C 1.38525 * 120.22205 * 0.02562 * 5 4 3 7 7 N 1.39582 * 120.15873 * 180.02562 * 6 5 4 8 8 C 1.36630 * 125.67047 * 293.41784 * 7 6 5 9 9 C 1.34838 * 108.19402 * 180.02562 * 8 7 6 10 10 C 1.41001 * 107.47838 * 0.02562 * 9 8 7 11 11 C 1.34838 * 107.47104 * 359.73222 * 10 9 8 12 12 C 1.50705 * 125.90112 * 180.29578 * 11 10 9 13 13 N 1.46906 * 109.47209 * 95.15345 * 12 11 10 14 14 C 1.41401 * 119.67604 * 359.97438 * 6 5 4 15 15 C 1.41101 * 120.26265 * 180.27287 * 14 6 5 16 16 H 1.07994 * 120.00138 * 334.79159 * 15 14 6 17 17 C 1.39949 * 119.99617 * 154.78592 * 15 14 6 18 18 N 1.30848 * 120.00337 * 342.00764 * 17 15 14 19 19 Si 1.86797 * 119.99711 * 162.00943 * 17 15 14 20 20 H 1.48505 * 109.47290 * 90.00194 * 19 17 15 21 21 H 1.48504 * 109.46958 * 209.99926 * 19 17 15 22 22 H 1.48497 * 109.47239 * 329.99807 * 19 17 15 23 23 C 1.37906 * 119.84321 * 179.97438 * 3 2 1 24 24 H 1.09002 * 109.47418 * 300.00561 * 1 2 3 25 25 H 1.09003 * 109.46628 * 59.99713 * 1 2 3 26 26 H 1.08994 * 109.47385 * 179.97438 * 1 2 3 27 27 H 1.08006 * 119.72769 * 0.02562 * 4 3 2 28 28 H 1.08002 * 119.88397 * 179.97438 * 5 4 3 29 29 H 1.08003 * 125.90526 * 0.03403 * 8 7 6 30 30 H 1.08003 * 126.26080 * 180.02562 * 9 8 7 31 31 H 1.07995 * 126.26280 * 180.02562 * 10 9 8 32 32 H 1.08997 * 109.47315 * 215.15822 * 12 11 10 33 33 H 1.09006 * 109.46695 * 335.15907 * 12 11 10 34 34 H 1.00893 * 110.99494 * 57.74229 * 13 12 11 35 35 H 1.00893 * 110.99883 * 181.69491 * 13 12 11 36 36 H 0.96996 * 120.00336 * 180.02562 * 18 17 15 37 37 H 1.08007 * 120.11830 * 0.04450 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2112 0.0000 4 6 1.2840 2.3778 0.0005 5 6 1.8961 3.6166 0.0011 6 6 3.2781 3.7115 0.0006 7 7 3.8951 4.9635 0.0016 8 6 3.8511 5.8743 -1.0159 9 6 4.5647 6.9562 -0.6437 10 6 5.0687 6.7067 0.6493 11 6 4.6398 5.4839 1.0221 12 6 4.9332 4.8071 2.3362 13 7 3.8269 5.0525 3.2712 14 6 4.0607 2.5337 0.0000 15 6 5.4693 2.6159 0.0053 16 1 5.9605 3.4932 -0.3888 17 6 6.2298 1.5605 0.5213 18 7 5.6713 0.6733 1.3044 19 14 8.0422 1.4183 0.0922 20 1 8.8480 2.1608 1.0946 21 1 8.4414 -0.0121 0.0976 22 1 8.2781 1.9929 -1.2566 23 6 3.4235 1.2795 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.2058 2.3132 0.0014 28 1 1.2950 4.5139 0.0011 29 1 3.3341 5.7493 -1.9558 30 1 4.7214 7.8503 -1.2289 31 1 5.6818 7.3748 1.2358 32 1 5.0425 3.7345 2.1761 33 1 5.8570 5.2083 2.7532 34 1 2.9525 4.7225 2.8911 35 1 4.0125 4.6318 4.1693 36 1 6.1985 -0.0579 1.6624 37 1 4.0111 0.3733 0.0002 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167592801.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:38 Heat of formation + Delta-G solvation = 15.791682 kcal Electronic energy + Delta-G solvation = -21116.024557 eV Core-core repulsion = 18051.432613 eV Total energy + Delta-G solvation = -3064.591944 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.18136 -40.41181 -38.10017 -35.69345 -35.28581 -33.09194 -31.78302 -29.79597 -29.62884 -27.56599 -27.08319 -25.03280 -23.40546 -22.73448 -21.09771 -20.01696 -19.59637 -18.25959 -18.02352 -17.17037 -16.59209 -16.44124 -16.40326 -15.62283 -15.25577 -14.99621 -14.77585 -14.74115 -14.33224 -13.74104 -13.56611 -13.37911 -13.07443 -12.95902 -12.86833 -12.82423 -12.74207 -12.56422 -12.34909 -11.98712 -11.71872 -11.49013 -11.08618 -9.71927 -9.54193 -9.45389 -8.91579 -8.73700 -8.59192 -6.51013 0.72320 0.84818 1.33265 1.41239 1.47205 1.63045 2.12264 2.27997 2.48403 2.58141 2.71055 3.47330 3.87579 4.14038 4.20518 4.37464 4.44625 4.45339 4.48177 4.57858 4.72695 4.77279 4.84021 4.91916 4.99939 5.02821 5.16127 5.36525 5.53050 5.57932 5.61956 5.66923 5.87240 5.95235 6.10786 6.28686 6.36020 6.55258 6.65111 6.69851 6.76287 6.81627 7.14813 8.15330 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.009694 C = 0.006498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.481425 B = 2887.583027 C = 4307.870492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.347 6.347 3 C 0.139 3.861 4 C -0.303 4.303 5 C -0.042 4.042 6 C -0.063 4.063 7 N -0.357 5.357 8 C -0.036 4.036 9 C -0.211 4.211 10 C -0.217 4.217 11 C 0.028 3.972 12 C 0.131 3.869 13 N -0.836 5.836 14 C 0.129 3.871 15 C -0.456 4.456 16 H 0.069 0.931 17 C 0.047 3.953 18 N -0.798 5.798 19 Si 0.967 3.033 20 H -0.259 1.259 21 H -0.262 1.262 22 H -0.264 1.264 23 C -0.221 4.221 24 H 0.056 0.944 25 H 0.059 0.941 26 H 0.116 0.884 27 H 0.135 0.865 28 H 0.118 0.882 29 H 0.163 0.837 30 H 0.153 0.847 31 H 0.140 0.860 32 H 0.033 0.967 33 H 0.086 0.914 34 H 0.334 0.666 35 H 0.346 0.654 36 H 0.293 0.707 37 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.921 1.915 -0.110 4.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.262 6.262 3 C 0.094 3.906 4 C -0.323 4.323 5 C -0.061 4.061 6 C -0.154 4.154 7 N -0.026 5.026 8 C -0.166 4.166 9 C -0.236 4.236 10 C -0.242 4.242 11 C -0.084 4.084 12 C 0.000 4.000 13 N -0.365 5.365 14 C 0.125 3.875 15 C -0.484 4.484 16 H 0.087 0.913 17 C -0.172 4.172 18 N -0.422 5.422 19 Si 0.788 3.212 20 H -0.183 1.183 21 H -0.187 1.187 22 H -0.188 1.188 23 C -0.241 4.241 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.135 0.865 27 H 0.153 0.847 28 H 0.136 0.864 29 H 0.180 0.820 30 H 0.170 0.830 31 H 0.158 0.842 32 H 0.051 0.949 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.159 0.841 36 H 0.104 0.896 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.767 1.947 -0.034 4.241 hybrid contribution 0.451 -1.205 -0.184 1.299 sum -3.316 0.742 -0.218 3.405 Atomic orbital electron populations 1.23191 0.77319 1.04743 1.01703 1.86004 1.22986 1.27945 1.89252 1.19053 0.92041 0.84040 0.95457 1.20611 0.99167 0.90889 1.21656 1.20543 0.92105 0.97095 0.96386 1.17681 0.91228 0.83233 1.23265 1.40946 1.37838 1.11198 1.12593 1.22200 1.08059 0.91451 0.94871 1.20975 1.05158 0.99804 0.97655 1.20773 1.08487 0.96659 0.98283 1.20438 1.01204 0.95258 0.91536 1.20138 0.94441 0.97555 0.87867 1.58855 1.04727 1.66787 1.06142 1.17416 0.93426 0.89304 0.87331 1.19459 0.91147 1.02818 1.35012 0.91264 1.26615 1.05131 0.93511 0.91937 1.69862 1.40330 1.11226 1.20803 0.85409 0.76863 0.78920 0.80037 1.18341 1.18659 1.18788 1.20360 0.90679 0.97996 1.15102 0.92512 0.92239 0.86543 0.84725 0.86428 0.81983 0.82979 0.84194 0.94904 0.89604 0.85493 0.84070 0.89646 0.87436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.68 9.81 113.37 1.11 1.79 16 2 O -0.35 -14.04 10.49 -92.82 -0.97 -15.01 16 3 C 0.14 6.27 6.67 22.46 0.15 6.42 16 4 C -0.30 -12.16 9.03 22.53 0.20 -11.96 16 5 C -0.04 -1.75 9.89 22.32 0.22 -1.53 16 6 C -0.06 -2.92 5.37 38.75 0.21 -2.72 16 7 N -0.36 -15.60 2.22 -331.88 -0.74 -16.34 16 8 C -0.04 -1.41 11.33 83.16 0.94 -0.47 16 9 C -0.21 -7.70 10.86 22.17 0.24 -7.46 16 10 C -0.22 -8.42 10.76 22.17 0.24 -8.18 16 11 C 0.03 1.19 5.49 41.03 0.23 1.42 16 12 C 0.13 5.29 6.82 85.56 0.58 5.87 16 13 N -0.84 -29.78 9.60 -189.98 -1.82 -31.61 16 14 C 0.13 6.57 5.09 -21.20 -0.11 6.47 16 15 C -0.46 -23.34 6.56 23.39 0.15 -23.18 16 16 H 0.07 3.68 7.33 -2.91 -0.02 3.66 16 17 C 0.05 2.24 5.13 85.25 0.44 2.68 16 18 N -0.80 -39.32 11.00 21.83 0.24 -39.08 16 19 Si 0.97 37.33 29.60 68.60 2.03 39.36 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 21 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 22 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 23 C -0.22 -11.28 8.60 22.79 0.20 -11.09 16 24 H 0.06 1.44 7.65 -2.39 -0.02 1.42 16 25 H 0.06 1.47 7.65 -2.39 -0.02 1.45 16 26 H 0.12 2.41 8.14 -2.39 -0.02 2.39 16 27 H 0.14 4.45 6.26 -2.91 -0.02 4.44 16 28 H 0.12 4.39 8.06 -2.91 -0.02 4.37 16 29 H 0.16 5.68 8.06 -2.91 -0.02 5.65 16 30 H 0.15 4.52 8.06 -2.91 -0.02 4.50 16 31 H 0.14 4.81 8.06 -2.91 -0.02 4.78 16 32 H 0.03 1.55 5.89 -2.39 -0.01 1.54 16 33 H 0.09 3.19 8.14 -2.38 -0.02 3.17 16 34 H 0.33 12.59 9.00 -89.70 -0.81 11.78 16 35 H 0.35 10.65 9.08 -89.70 -0.81 9.83 16 36 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 37 H 0.11 5.89 6.21 -2.91 -0.02 5.88 16 Total: -1.00 -57.93 311.52 3.03 -54.90 By element: Atomic # 1 Polarization: 50.24 SS G_CDS: -0.51 Total: 49.73 kcal Atomic # 6 Polarization: -46.75 SS G_CDS: 4.80 Total: -41.95 kcal Atomic # 7 Polarization: -84.70 SS G_CDS: -2.32 Total: -87.03 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.97 Total: -15.01 kcal Atomic # 14 Polarization: 37.33 SS G_CDS: 2.03 Total: 39.36 kcal Total: -57.93 3.03 -54.90 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167592801.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.690 kcal (2) G-P(sol) polarization free energy of solvation -57.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds