Wall clock time and date at job start Mon Mar 30 2020 01:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35654 * 117.00208 * 2 1 4 4 C 1.38136 * 120.22132 * 359.97438 * 3 2 1 5 5 C 1.39068 * 119.98855 * 179.97438 * 4 3 2 6 6 N 1.39650 * 119.78027 * 179.72292 * 5 4 3 7 7 C 1.36641 * 125.67734 * 310.02692 * 6 5 4 8 8 C 1.34821 * 108.19509 * 179.97438 * 7 6 5 9 9 C 1.41008 * 107.48433 * 359.97438 * 8 7 6 10 10 C 1.34828 * 107.47494 * 359.73781 * 9 8 7 11 11 C 1.50694 * 125.90422 * 180.29211 * 10 9 8 12 12 N 1.46900 * 109.47211 * 95.14939 * 11 10 9 13 13 C 1.39558 * 120.43589 * 0.02562 * 5 4 3 14 14 C 1.36279 * 120.45285 * 359.97438 * 13 5 4 15 15 C 1.40826 * 119.99571 * 0.02562 * 14 13 5 16 16 C 1.40991 * 120.21312 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99736 * 204.79845 * 16 15 14 18 18 C 1.39898 * 120.00318 * 24.79212 * 16 15 14 19 19 N 1.30909 * 119.99557 * 17.81680 * 18 16 15 20 20 Si 1.86802 * 120.00204 * 197.81359 * 18 16 15 21 21 H 1.48501 * 109.46936 * 60.00473 * 20 18 16 22 22 H 1.48497 * 109.47006 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46995 * 300.00007 * 20 18 16 24 24 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46640 * 299.99763 * 1 2 3 26 26 H 1.09001 * 109.47014 * 59.99953 * 1 2 3 27 27 H 1.08001 * 120.00702 * 359.96148 * 4 3 2 28 28 H 1.07996 * 125.90409 * 359.97438 * 7 6 5 29 29 H 1.07997 * 126.26299 * 180.02562 * 8 7 6 30 30 H 1.07997 * 126.26287 * 179.97438 * 9 8 7 31 31 H 1.08994 * 109.47590 * 215.15637 * 11 10 9 32 32 H 1.09002 * 109.47024 * 335.15583 * 11 10 9 33 33 H 1.00897 * 111.00021 * 180.02562 * 12 11 10 34 34 H 1.00894 * 111.00512 * 303.95915 * 12 11 10 35 35 H 1.07997 * 119.77280 * 179.97438 * 13 5 4 36 36 H 1.08002 * 120.00083 * 180.02562 * 14 13 5 37 37 H 0.96997 * 119.99328 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2971 2.3701 -0.0005 5 6 1.9336 3.6066 0.0000 6 7 1.1733 4.7780 -0.0064 7 6 0.1450 5.0560 -0.8622 8 6 -0.3385 6.2769 -0.5568 9 6 0.4160 6.7726 0.5264 10 6 1.3292 5.8339 0.8469 11 6 2.3483 5.9334 1.9526 12 7 1.8258 5.2805 3.1603 13 6 3.3270 3.6845 0.0006 14 6 4.0822 2.5501 0.0011 15 6 3.4571 1.2882 0.0005 16 6 4.2340 0.1116 0.0016 17 1 3.8234 -0.8069 -0.3910 18 6 5.5367 0.1340 0.5112 19 7 5.9179 1.1144 1.2904 20 14 6.7320 -1.2352 0.0798 21 1 6.9234 -1.2796 -1.3922 22 1 8.0367 -0.9800 0.7415 23 1 6.1861 -2.5345 0.5475 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2184 2.3179 -0.0016 28 1 -0.2178 4.4094 -1.6475 29 1 -1.1551 6.7825 -1.0507 30 1 0.2839 7.7277 1.0129 31 1 3.2698 5.4407 1.6429 32 1 2.5514 6.9829 2.1660 33 1 2.4911 5.3342 3.9170 34 1 0.9383 5.6771 3.4307 35 1 3.8101 4.6504 0.0005 36 1 5.1600 2.6190 0.0019 37 1 6.8210 1.1296 1.6440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167593595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:42 Heat of formation + Delta-G solvation = 35.934482 kcal Electronic energy + Delta-G solvation = -20654.703837 eV Core-core repulsion = 17590.985351 eV Total energy + Delta-G solvation = -3063.718486 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.85906 -38.64272 -36.20780 -34.26683 -34.02967 -31.58026 -29.21322 -28.79013 -28.33495 -26.60250 -24.79422 -23.93797 -21.55515 -21.05466 -19.62537 -18.83048 -17.58418 -17.24540 -15.70585 -15.56580 -15.16641 -14.77836 -14.63820 -14.41913 -14.18600 -13.43538 -13.20947 -12.93480 -12.79014 -12.75486 -12.27843 -11.89988 -11.75765 -11.55461 -11.30198 -11.18839 -10.94352 -10.85377 -10.65342 -10.05243 -9.99892 -9.80595 -9.33371 -8.40770 -8.28979 -7.54290 -7.46433 -7.13953 -6.86656 -4.36624 2.28236 2.84386 2.91544 3.01639 3.05031 3.19204 3.47102 3.79456 3.85482 4.38251 4.46884 5.05643 5.34809 5.40982 5.56071 5.70662 5.74272 5.77707 5.88039 5.89566 6.00175 6.03861 6.13853 6.24725 6.57845 6.71823 6.77533 6.89940 6.99032 7.13410 7.31603 7.35057 7.52576 7.58548 7.68970 7.73184 7.93276 8.03894 8.23801 8.39475 8.52506 8.66870 8.91300 10.02928 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020780 B = 0.005831 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.098723 B = 4800.595835 C = 5573.278945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.309 6.309 3 C 0.021 3.979 4 C -0.158 4.158 5 C -0.003 4.003 6 N -0.344 5.344 7 C -0.013 4.013 8 C -0.216 4.216 9 C -0.213 4.213 10 C 0.021 3.979 11 C 0.129 3.871 12 N -0.838 5.838 13 C -0.103 4.103 14 C -0.142 4.142 15 C 0.105 3.895 16 C -0.432 4.432 17 H 0.086 0.914 18 C 0.072 3.928 19 N -0.784 5.784 20 Si 0.914 3.086 21 H -0.262 1.262 22 H -0.277 1.277 23 H -0.263 1.263 24 H 0.084 0.916 25 H 0.041 0.959 26 H 0.039 0.961 27 H 0.102 0.898 28 H 0.152 0.848 29 H 0.127 0.873 30 H 0.124 0.876 31 H 0.086 0.914 32 H 0.037 0.963 33 H 0.340 0.660 34 H 0.337 0.663 35 H 0.094 0.906 36 H 0.130 0.870 37 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.808 4.724 0.112 6.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.223 6.223 3 C -0.024 4.024 4 C -0.179 4.179 5 C -0.094 4.094 6 N -0.011 5.011 7 C -0.145 4.145 8 C -0.240 4.240 9 C -0.238 4.238 10 C -0.092 4.092 11 C -0.002 4.002 12 N -0.368 5.368 13 C -0.122 4.122 14 C -0.163 4.163 15 C 0.102 3.898 16 C -0.460 4.460 17 H 0.104 0.896 18 C -0.147 4.147 19 N -0.408 5.408 20 Si 0.738 3.262 21 H -0.186 1.186 22 H -0.202 1.202 23 H -0.188 1.188 24 H 0.102 0.898 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.120 0.880 28 H 0.169 0.831 29 H 0.145 0.855 30 H 0.142 0.858 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.153 0.847 34 H 0.149 0.851 35 H 0.112 0.888 36 H 0.148 0.852 37 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.292 3.631 -0.172 5.624 hybrid contribution 0.179 0.645 0.357 0.759 sum -4.113 4.276 0.184 5.936 Atomic orbital electron populations 1.22759 0.81481 1.01937 1.00039 1.85977 1.18409 1.27696 1.90257 1.18898 0.92077 0.82375 1.09035 1.20374 0.97586 0.91298 1.08600 1.16770 0.89674 0.82855 1.20056 1.41199 1.24468 1.12428 1.23038 1.21817 0.94574 0.98815 0.99313 1.20648 1.04340 0.96573 1.02478 1.20497 1.00662 0.99990 1.02670 1.20206 1.02417 0.89819 0.96757 1.20229 0.95938 0.96214 0.87788 1.58556 1.07703 1.63531 1.07028 1.20200 0.91097 0.97868 1.03061 1.20674 0.99648 0.90039 1.05895 1.17121 0.87315 0.94126 0.91249 1.19488 0.96488 0.96745 1.33320 0.89554 1.25991 0.98952 0.97132 0.92612 1.69843 1.19471 1.30402 1.21123 0.86263 0.78695 0.81233 0.80043 1.18648 1.20234 1.18789 0.89794 0.94016 0.94213 0.88026 0.83059 0.85510 0.85785 0.89585 0.94458 0.84737 0.85122 0.88824 0.85216 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.81 101.05 0.99 1.57 16 2 O -0.31 -7.05 9.78 -18.66 -0.18 -7.23 16 3 C 0.02 0.52 6.72 -38.40 -0.26 0.26 16 4 C -0.16 -3.61 8.62 -39.31 -0.34 -3.95 16 5 C 0.00 -0.07 5.80 -83.50 -0.48 -0.55 16 6 N -0.34 -7.04 2.85 -56.60 -0.16 -7.20 16 7 C -0.01 -0.25 11.10 -16.62 -0.18 -0.43 16 8 C -0.22 -3.65 10.86 -39.74 -0.43 -4.08 16 9 C -0.21 -3.64 10.76 -39.74 -0.43 -4.07 16 10 C 0.02 0.40 6.24 -81.66 -0.51 -0.11 16 11 C 0.13 2.16 6.89 -4.98 -0.03 2.12 16 12 N -0.84 -13.31 9.61 -11.41 -0.11 -13.42 16 13 C -0.10 -2.37 8.35 -39.79 -0.33 -2.71 16 14 C -0.14 -3.55 8.62 -39.31 -0.34 -3.89 16 15 C 0.11 2.74 5.58 -106.66 -0.60 2.14 16 16 C -0.43 -11.19 8.71 -37.92 -0.33 -11.52 16 17 H 0.09 2.21 7.65 -52.48 -0.40 1.81 16 18 C 0.07 1.74 5.13 -17.32 -0.09 1.65 16 19 N -0.78 -19.33 10.97 55.55 0.61 -18.72 16 20 Si 0.91 18.06 29.60 -169.99 -5.03 13.03 16 21 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 22 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 23 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 24 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.04 0.70 7.67 -51.93 -0.40 0.30 16 26 H 0.04 0.63 7.66 -51.93 -0.40 0.23 16 27 H 0.10 2.13 6.29 -52.49 -0.33 1.80 16 28 H 0.15 2.51 8.06 -52.49 -0.42 2.09 16 29 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.09 1.59 5.54 -51.93 -0.29 1.31 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.34 4.60 9.08 -39.29 -0.36 4.24 16 34 H 0.34 4.78 8.98 -39.29 -0.35 4.43 16 35 H 0.09 2.01 6.88 -52.49 -0.36 1.65 16 36 H 0.13 3.28 6.17 -52.49 -0.32 2.96 16 37 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 LS Contribution 312.01 15.07 4.70 4.70 Total: -1.00 -28.40 312.01 -7.99 -36.39 By element: Atomic # 1 Polarization: 20.48 SS G_CDS: -4.46 Total: 16.02 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -3.36 Total: -23.56 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.34 Total: -39.35 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.18 Total: -7.23 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -28.40 -7.99 -36.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167593595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.325 kcal (2) G-P(sol) polarization free energy of solvation -28.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds