Wall clock time and date at job start Mon Mar 30 2020 01:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35654 * 117.00208 * 2 1 4 4 C 1.38136 * 120.22132 * 359.97438 * 3 2 1 5 5 C 1.39068 * 119.98855 * 179.97438 * 4 3 2 6 6 N 1.39650 * 119.78027 * 179.72292 * 5 4 3 7 7 C 1.36641 * 125.67734 * 310.02692 * 6 5 4 8 8 C 1.34821 * 108.19509 * 179.97438 * 7 6 5 9 9 C 1.41008 * 107.48433 * 359.97438 * 8 7 6 10 10 C 1.34828 * 107.47494 * 359.73781 * 9 8 7 11 11 C 1.50694 * 125.90422 * 180.29211 * 10 9 8 12 12 N 1.46900 * 109.47211 * 95.14939 * 11 10 9 13 13 C 1.39558 * 120.43589 * 0.02562 * 5 4 3 14 14 C 1.36279 * 120.45285 * 359.97438 * 13 5 4 15 15 C 1.40826 * 119.99571 * 0.02562 * 14 13 5 16 16 C 1.40991 * 120.21312 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99736 * 204.79845 * 16 15 14 18 18 C 1.39898 * 120.00318 * 24.79212 * 16 15 14 19 19 N 1.30909 * 119.99557 * 17.81680 * 18 16 15 20 20 Si 1.86802 * 120.00204 * 197.81359 * 18 16 15 21 21 H 1.48501 * 109.46936 * 60.00473 * 20 18 16 22 22 H 1.48497 * 109.47006 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.46995 * 300.00007 * 20 18 16 24 24 H 1.09001 * 109.47339 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46640 * 299.99763 * 1 2 3 26 26 H 1.09001 * 109.47014 * 59.99953 * 1 2 3 27 27 H 1.08001 * 120.00702 * 359.96148 * 4 3 2 28 28 H 1.07996 * 125.90409 * 359.97438 * 7 6 5 29 29 H 1.07997 * 126.26299 * 180.02562 * 8 7 6 30 30 H 1.07997 * 126.26287 * 179.97438 * 9 8 7 31 31 H 1.08994 * 109.47590 * 215.15637 * 11 10 9 32 32 H 1.09002 * 109.47024 * 335.15583 * 11 10 9 33 33 H 1.00897 * 111.00021 * 180.02562 * 12 11 10 34 34 H 1.00894 * 111.00512 * 303.95915 * 12 11 10 35 35 H 1.07997 * 119.77280 * 179.97438 * 13 5 4 36 36 H 1.08002 * 120.00083 * 180.02562 * 14 13 5 37 37 H 0.96997 * 119.99328 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 1.2971 2.3701 -0.0005 5 6 1.9336 3.6066 0.0000 6 7 1.1733 4.7780 -0.0064 7 6 0.1450 5.0560 -0.8622 8 6 -0.3385 6.2769 -0.5568 9 6 0.4160 6.7726 0.5264 10 6 1.3292 5.8339 0.8469 11 6 2.3483 5.9334 1.9526 12 7 1.8258 5.2805 3.1603 13 6 3.3270 3.6845 0.0006 14 6 4.0822 2.5501 0.0011 15 6 3.4571 1.2882 0.0005 16 6 4.2340 0.1116 0.0016 17 1 3.8234 -0.8069 -0.3910 18 6 5.5367 0.1340 0.5112 19 7 5.9179 1.1144 1.2904 20 14 6.7320 -1.2352 0.0798 21 1 6.9234 -1.2796 -1.3922 22 1 8.0367 -0.9800 0.7415 23 1 6.1861 -2.5345 0.5475 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2184 2.3179 -0.0016 28 1 -0.2178 4.4094 -1.6475 29 1 -1.1551 6.7825 -1.0507 30 1 0.2839 7.7277 1.0129 31 1 3.2698 5.4407 1.6429 32 1 2.5514 6.9829 2.1660 33 1 2.4911 5.3342 3.9170 34 1 0.9383 5.6771 3.4307 35 1 3.8101 4.6504 0.0005 36 1 5.1600 2.6190 0.0019 37 1 6.8210 1.1296 1.6440 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167593595.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:41 Heat of formation + Delta-G solvation = 19.138279 kcal Electronic energy + Delta-G solvation = -20655.432175 eV Core-core repulsion = 17590.985351 eV Total energy + Delta-G solvation = -3064.446824 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.127 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.32298 -40.36775 -37.94489 -35.81391 -35.54128 -33.23749 -30.94548 -30.46604 -29.76558 -28.12268 -26.53840 -25.26329 -23.27645 -22.78041 -21.07555 -20.39248 -19.40256 -18.74470 -17.38309 -17.18420 -16.58692 -16.39934 -16.29279 -15.83786 -15.75392 -14.88536 -14.81357 -14.45162 -14.30964 -14.14355 -13.86785 -13.60130 -13.18408 -13.09015 -12.88307 -12.77761 -12.58051 -12.31972 -12.18359 -11.79009 -11.68819 -11.56435 -11.09876 -9.93721 -9.59808 -9.20944 -8.94219 -8.91175 -8.65062 -6.25835 0.56602 0.97752 1.37902 1.41129 1.51537 1.62813 2.14288 2.20606 2.30092 2.63274 2.83172 3.54468 3.84353 3.98678 4.15089 4.25659 4.33775 4.39233 4.42441 4.43109 4.61948 4.69287 4.70997 4.79173 4.87896 5.05527 5.22853 5.28491 5.38553 5.44070 5.53233 5.70971 5.87018 6.10025 6.13996 6.30619 6.35067 6.55274 6.63994 6.68068 6.76741 6.85707 7.12974 8.27198 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020780 B = 0.005831 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.098723 B = 4800.595835 C = 5573.278945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.332 6.332 3 C 0.013 3.987 4 C -0.164 4.164 5 C 0.013 3.987 6 N -0.366 5.366 7 C -0.035 4.035 8 C -0.206 4.206 9 C -0.207 4.207 10 C 0.001 3.999 11 C 0.130 3.870 12 N -0.853 5.853 13 C -0.108 4.108 14 C -0.154 4.154 15 C 0.070 3.930 16 C -0.469 4.469 17 H 0.076 0.924 18 C 0.036 3.964 19 N -0.815 5.815 20 Si 0.984 3.016 21 H -0.259 1.259 22 H -0.264 1.264 23 H -0.262 1.262 24 H 0.117 0.883 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.120 0.880 28 H 0.163 0.837 29 H 0.158 0.842 30 H 0.153 0.847 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.351 0.649 34 H 0.347 0.653 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.000 5.694 0.097 8.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.247 6.247 3 C -0.032 4.032 4 C -0.184 4.184 5 C -0.078 4.078 6 N -0.035 5.035 7 C -0.165 4.165 8 C -0.230 4.230 9 C -0.232 4.232 10 C -0.111 4.111 11 C 0.000 4.000 12 N -0.386 5.386 13 C -0.128 4.128 14 C -0.175 4.175 15 C 0.067 3.933 16 C -0.497 4.497 17 H 0.094 0.906 18 C -0.180 4.180 19 N -0.440 5.440 20 Si 0.804 3.196 21 H -0.184 1.184 22 H -0.188 1.188 23 H -0.186 1.186 24 H 0.135 0.865 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.137 0.863 28 H 0.181 0.819 29 H 0.175 0.825 30 H 0.171 0.829 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.165 0.835 34 H 0.160 0.840 35 H 0.122 0.878 36 H 0.136 0.864 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.518 4.631 -0.179 7.206 hybrid contribution 0.333 0.503 0.376 0.711 sum -5.184 5.134 0.196 7.298 Atomic orbital electron populations 1.23090 0.78577 1.04442 1.00703 1.85929 1.21452 1.27200 1.90150 1.19046 0.92024 0.83500 1.08660 1.20555 0.98422 0.90952 1.08499 1.16857 0.89693 0.83955 1.17297 1.41285 1.25344 1.12238 1.24642 1.22246 0.94409 1.00062 0.99796 1.21062 1.04370 0.95760 1.01852 1.20901 0.99547 1.00509 1.02261 1.20687 1.03440 0.89703 0.97257 1.20206 0.94486 0.97654 0.87698 1.58494 1.08697 1.64041 1.07352 1.20295 0.91683 0.97724 1.03081 1.20615 0.99296 0.90596 1.06955 1.17474 0.88601 0.94672 0.92520 1.19597 0.98115 0.96532 1.35498 0.90551 1.26770 0.99885 0.99557 0.91825 1.69876 1.20253 1.32084 1.21781 0.85220 0.76643 0.77956 0.79759 1.18364 1.18841 1.18611 0.86508 0.93749 0.92930 0.86266 0.81944 0.82485 0.82942 0.92025 0.91519 0.83472 0.83984 0.87781 0.86434 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.88 9.81 113.37 1.11 2.00 16 2 O -0.33 -15.34 9.78 -89.69 -0.88 -16.21 16 3 C 0.01 0.65 6.72 23.03 0.15 0.80 16 4 C -0.16 -7.49 8.62 22.44 0.19 -7.30 16 5 C 0.01 0.59 5.80 38.41 0.22 0.82 16 6 N -0.37 -14.49 2.85 -332.99 -0.95 -15.44 16 7 C -0.04 -1.23 11.10 83.16 0.92 -0.30 16 8 C -0.21 -6.25 10.86 22.16 0.24 -6.01 16 9 C -0.21 -6.37 10.76 22.17 0.24 -6.13 16 10 C 0.00 0.04 6.24 41.02 0.26 0.29 16 11 C 0.13 4.18 6.89 85.56 0.59 4.77 16 12 N -0.85 -26.03 9.61 -190.02 -1.83 -27.86 16 13 C -0.11 -5.12 8.35 22.13 0.18 -4.94 16 14 C -0.15 -8.03 8.62 22.45 0.19 -7.84 16 15 C 0.07 3.81 5.58 -21.18 -0.12 3.69 16 16 C -0.47 -25.33 8.71 23.35 0.20 -25.13 16 17 H 0.08 4.11 7.65 -2.91 -0.02 4.08 16 18 C 0.04 1.77 5.13 85.23 0.44 2.20 16 19 N -0.81 -41.45 10.97 21.82 0.24 -41.21 16 20 Si 0.98 37.62 29.60 68.60 2.03 39.65 16 21 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 22 H -0.26 -9.42 7.11 99.48 0.71 -8.72 16 23 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 24 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 25 H 0.04 1.43 7.67 -2.39 -0.02 1.41 16 26 H 0.05 1.59 7.66 -2.39 -0.02 1.57 16 27 H 0.12 4.90 6.29 -2.91 -0.02 4.88 16 28 H 0.16 5.08 8.06 -2.91 -0.02 5.06 16 29 H 0.16 3.75 8.06 -2.91 -0.02 3.72 16 30 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 31 H 0.06 2.28 5.54 -2.39 -0.01 2.26 16 32 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.35 9.15 9.08 -89.70 -0.81 8.33 16 34 H 0.35 9.20 8.98 -89.70 -0.81 8.39 16 35 H 0.10 4.58 6.88 -2.91 -0.02 4.56 16 36 H 0.12 6.28 6.17 -2.91 -0.02 6.26 16 37 H 0.29 13.35 8.30 -92.71 -0.77 12.58 16 Total: -1.00 -62.40 312.01 2.94 -59.45 By element: Atomic # 1 Polarization: 45.21 SS G_CDS: -0.51 Total: 44.71 kcal Atomic # 6 Polarization: -47.91 SS G_CDS: 4.83 Total: -43.08 kcal Atomic # 7 Polarization: -81.98 SS G_CDS: -2.54 Total: -84.51 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.88 Total: -16.21 kcal Atomic # 14 Polarization: 37.62 SS G_CDS: 2.03 Total: 39.65 kcal Total: -62.40 2.94 -59.45 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167593595.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.591 kcal (2) G-P(sol) polarization free energy of solvation -62.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds