Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48499 * 109.47145 * 239.99964 * 3 2 1 5 5 H 1.48508 * 109.47233 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46974 * 119.99854 * 3 2 1 7 7 C 1.37871 * 120.00151 * 179.97438 * 2 1 3 8 8 C 1.51276 * 120.84883 * 0.02562 * 7 2 1 9 9 C 1.53228 * 108.53512 * 231.32177 * 8 7 2 10 10 C 1.52951 * 109.40999 * 305.37424 * 9 8 7 11 11 H 1.09002 * 109.35571 * 303.53022 * 10 9 8 12 12 N 1.46491 * 109.41713 * 183.70456 * 10 9 8 13 13 C 1.39038 * 120.00264 * 84.64400 * 12 10 9 14 14 C 1.39477 * 119.41304 * 0.02562 * 13 12 10 15 15 C 1.36880 * 119.63982 * 179.97438 * 14 13 12 16 16 C 1.40017 * 118.38577 * 359.97438 * 15 14 13 17 17 N 1.35757 * 133.75165 * 179.97438 * 16 15 14 18 18 C 1.30064 * 109.49821 * 180.02562 * 17 16 15 19 19 N 1.36241 * 110.03138 * 0.02562 * 18 17 16 20 20 H 0.97000 * 126.27803 * 179.97438 * 19 18 17 21 21 C 1.37757 * 107.43790 * 0.02562 * 19 18 17 22 22 N 1.32225 * 119.41741 * 179.72813 * 13 12 10 23 23 C 1.52963 * 109.81716 * 63.59625 * 10 9 8 24 24 C 1.51269 * 120.85240 * 179.97438 * 7 2 1 25 25 H 0.97003 * 119.99821 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.62630 * 351.04217 * 8 7 2 27 27 H 1.09003 * 109.62166 * 111.61116 * 8 7 2 28 28 H 1.08999 * 109.47771 * 65.35953 * 9 8 7 29 29 H 1.09003 * 109.47886 * 185.39008 * 9 8 7 30 30 H 0.96998 * 120.00316 * 264.64972 * 12 10 9 31 31 H 1.08001 * 120.17830 * 359.97438 * 14 13 12 32 32 H 1.08002 * 120.80891 * 180.02562 * 15 14 13 33 33 H 1.07997 * 124.98696 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.48191 * 176.42349 * 23 10 9 35 35 H 1.08997 * 109.49004 * 56.39212 * 23 10 9 36 36 H 1.08995 * 109.62532 * 248.39207 * 24 7 2 37 37 H 1.09000 * 109.62052 * 8.77161 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7466 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8230 -3.3825 1.1351 10 6 3.3399 -3.5070 0.9841 11 1 3.5729 -3.9117 -0.0008 12 7 3.8598 -4.4074 2.0160 13 6 3.8525 -5.7820 1.8072 14 6 3.3477 -6.2904 0.6104 15 6 3.3387 -7.6428 0.3998 16 6 3.8431 -8.4765 1.4053 17 7 3.9827 -9.8213 1.5275 18 6 4.5176 -10.0992 2.6800 19 7 4.7558 -8.9507 3.3731 20 1 5.1484 -8.8851 4.2577 21 6 4.3359 -7.8999 2.5875 22 7 4.3295 -6.5838 2.7441 23 6 3.9907 -2.1309 1.1352 24 6 3.5171 -1.2164 0.0000 25 1 -0.4850 0.8401 -0.0004 26 1 0.2037 -2.3409 0.1599 27 1 1.4201 -3.0192 -0.9538 28 1 1.5898 -2.9196 2.0940 29 1 1.3706 -4.3732 1.0900 30 1 4.2092 -4.0448 2.8450 31 1 2.9660 -5.6205 -0.1459 32 1 2.9526 -8.0568 -0.5200 33 1 4.7403 -11.0944 3.0355 34 1 5.0748 -2.2346 1.0901 35 1 3.7065 -1.6976 2.0941 36 1 3.8772 -1.6005 -0.9544 37 1 3.8982 -0.2072 0.1557 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167841189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = 76.022926 kcal Electronic energy + Delta-G solvation = -20269.245793 eV Core-core repulsion = 17239.558423 eV Total energy + Delta-G solvation = -3029.687370 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.07299 -39.02130 -37.03653 -33.99170 -33.44553 -31.70170 -31.06557 -29.71236 -28.55349 -26.71226 -23.70274 -22.87732 -21.72836 -21.44506 -21.18973 -19.61612 -18.34069 -17.48413 -16.87412 -15.98156 -15.49747 -15.33832 -14.52518 -14.33582 -14.18211 -13.54940 -13.26145 -13.01558 -12.81458 -12.67546 -12.19730 -12.08509 -11.62602 -11.11655 -11.01978 -10.91997 -10.86155 -10.75236 -10.34819 -10.03376 -9.75955 -9.52720 -9.04954 -8.99040 -8.78246 -8.70478 -8.53434 -7.22087 -6.16133 -4.08288 1.14108 1.58906 2.56282 2.93075 3.24068 3.31843 3.32093 3.59242 4.09251 4.29612 4.32742 4.65676 5.06052 5.09609 5.16300 5.24193 5.49829 5.65573 5.77557 5.92463 6.01247 6.16761 6.24635 6.38508 6.49755 6.61246 6.64738 6.71291 6.85255 6.90770 6.99421 7.13033 7.28346 7.43212 7.57286 7.65996 7.77131 7.79486 7.93411 8.30749 8.35369 8.90026 9.47677 10.93304 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.048246 B = 0.003820 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.222088 B = 7327.706950 C = 7589.782221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.274 1.274 7 C -0.494 4.494 8 C 0.012 3.988 9 C -0.121 4.121 10 C 0.161 3.839 11 H 0.075 0.925 12 N -0.709 5.709 13 C 0.454 3.546 14 C -0.227 4.227 15 C 0.017 3.983 16 C -0.068 4.068 17 N -0.475 5.475 18 C 0.236 3.764 19 N -0.596 5.596 20 H 0.423 0.577 21 C 0.293 3.707 22 N -0.569 5.569 23 C -0.113 4.113 24 C -0.007 4.007 25 H 0.266 0.734 26 H 0.059 0.941 27 H 0.006 0.994 28 H 0.053 0.947 29 H 0.035 0.965 30 H 0.399 0.601 31 H 0.147 0.853 32 H 0.139 0.861 33 H 0.216 0.784 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.643 -13.945 5.105 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.125 4.125 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.512 4.512 8 C -0.026 4.026 9 C -0.160 4.160 10 C 0.057 3.943 11 H 0.093 0.907 12 N -0.338 5.338 13 C 0.207 3.793 14 C -0.253 4.253 15 C -0.010 4.010 16 C -0.189 4.189 17 N -0.194 5.194 18 C -0.052 4.052 19 N -0.212 5.212 20 H 0.261 0.739 21 C 0.056 3.944 22 N -0.296 5.296 23 C -0.152 4.152 24 C -0.045 4.045 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.024 0.976 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.234 0.766 31 H 0.165 0.835 32 H 0.157 0.843 33 H 0.233 0.767 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.040 0.960 37 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 8.432 -13.966 4.975 17.055 hybrid contribution 0.714 1.273 0.912 1.721 sum 9.146 -12.692 5.887 16.715 Atomic orbital electron populations 1.69822 1.06175 1.27164 1.49294 1.24843 0.94726 0.98566 0.94407 0.86669 0.79435 0.83058 0.78980 1.19949 1.21829 1.19994 1.20011 0.89166 0.91618 1.50452 1.19361 0.98838 0.92702 0.91706 1.22118 0.93153 0.98635 1.02120 1.21167 0.94884 0.88796 0.89406 0.90728 1.45206 1.66016 1.00949 1.21670 1.18013 0.87951 0.85421 0.87884 1.21232 1.09036 0.95728 0.99288 1.20227 0.92799 0.91230 0.96707 1.19379 1.11582 0.90804 0.97154 1.70247 1.18134 1.13497 1.17565 1.25117 0.99965 0.91236 0.88841 1.42757 1.54661 1.05111 1.18708 0.73855 1.18445 0.97766 0.87440 0.90712 1.65730 1.28680 1.01488 1.33737 1.21856 0.97033 0.94458 1.01822 1.19584 0.96856 0.94553 0.93491 0.92430 0.92193 0.97589 0.92803 0.94614 0.76571 0.83507 0.84349 0.76745 0.94139 0.92324 0.96041 0.95303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.82 12.73 55.43 0.71 -24.11 16 2 C 0.08 2.05 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 20.50 26.80 -169.99 -4.56 15.94 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.49 -12.29 5.51 -98.92 -0.55 -12.83 16 8 C 0.01 0.28 5.97 -27.48 -0.16 0.11 16 9 C -0.12 -2.42 5.39 -26.64 -0.14 -2.56 16 10 C 0.16 2.83 2.04 -67.98 -0.14 2.69 16 11 H 0.07 1.30 6.43 -51.93 -0.33 0.97 16 12 N -0.71 -11.35 5.24 -53.92 -0.28 -11.63 16 13 C 0.45 7.43 7.62 -155.01 -1.18 6.25 16 14 C -0.23 -3.48 8.70 -39.61 -0.34 -3.83 16 15 C 0.02 0.25 10.16 -39.41 -0.40 -0.15 16 16 C -0.07 -1.06 7.24 -84.62 -0.61 -1.67 16 17 N -0.48 -6.67 11.28 -11.96 -0.13 -6.80 16 18 C 0.24 2.33 12.98 -89.63 -1.16 1.17 16 19 N -0.60 -6.36 6.22 -13.24 -0.08 -6.45 16 20 H 0.42 3.10 8.96 -40.82 -0.37 2.73 16 21 C 0.29 4.44 8.45 -155.60 -1.32 3.13 16 22 N -0.57 -9.35 10.42 -11.46 -0.12 -9.47 16 23 C -0.11 -2.08 5.40 -26.61 -0.14 -2.23 16 24 C -0.01 -0.15 5.60 -27.46 -0.15 -0.30 16 25 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.06 1.57 7.07 -51.93 -0.37 1.20 16 27 H 0.01 0.13 8.14 -51.93 -0.42 -0.29 16 28 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.04 0.67 7.63 -51.93 -0.40 0.28 16 30 H 0.40 6.04 8.72 -40.82 -0.36 5.68 16 31 H 0.15 2.17 6.03 -52.49 -0.32 1.85 16 32 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 33 H 0.22 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.03 0.62 5.17 -51.93 -0.27 0.35 16 LS Contribution 299.68 15.07 4.52 4.52 Total: -1.00 -30.38 299.68 -10.85 -41.24 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.50 Total: 5.03 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: -6.40 Total: -8.28 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.09 Total: -58.46 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.56 Total: 15.94 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.38 -10.85 -41.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.262 kcal (2) G-P(sol) polarization free energy of solvation -30.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds