Wall clock time and date at job start Mon Mar 30 2020 02:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86802 * 119.99852 * 2 1 4 4 H 1.48499 * 109.47145 * 239.99964 * 3 2 1 5 5 H 1.48508 * 109.47233 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46974 * 119.99854 * 3 2 1 7 7 C 1.37871 * 120.00151 * 179.97438 * 2 1 3 8 8 C 1.51276 * 120.84883 * 0.02562 * 7 2 1 9 9 C 1.53228 * 108.53512 * 231.32177 * 8 7 2 10 10 C 1.52951 * 109.40999 * 305.37424 * 9 8 7 11 11 H 1.09002 * 109.35571 * 303.53022 * 10 9 8 12 12 N 1.46491 * 109.41713 * 183.70456 * 10 9 8 13 13 C 1.39038 * 120.00264 * 84.64400 * 12 10 9 14 14 C 1.39477 * 119.41304 * 0.02562 * 13 12 10 15 15 C 1.36880 * 119.63982 * 179.97438 * 14 13 12 16 16 C 1.40017 * 118.38577 * 359.97438 * 15 14 13 17 17 N 1.35757 * 133.75165 * 179.97438 * 16 15 14 18 18 C 1.30064 * 109.49821 * 180.02562 * 17 16 15 19 19 N 1.36241 * 110.03138 * 0.02562 * 18 17 16 20 20 H 0.97000 * 126.27803 * 179.97438 * 19 18 17 21 21 C 1.37757 * 107.43790 * 0.02562 * 19 18 17 22 22 N 1.32225 * 119.41741 * 179.72813 * 13 12 10 23 23 C 1.52963 * 109.81716 * 63.59625 * 10 9 8 24 24 C 1.51269 * 120.85240 * 179.97438 * 7 2 1 25 25 H 0.97003 * 119.99821 * 0.02562 * 1 2 3 26 26 H 1.08991 * 109.62630 * 351.04217 * 8 7 2 27 27 H 1.09003 * 109.62166 * 111.61116 * 8 7 2 28 28 H 1.08999 * 109.47771 * 65.35953 * 9 8 7 29 29 H 1.09003 * 109.47886 * 185.39008 * 9 8 7 30 30 H 0.96998 * 120.00316 * 264.64972 * 12 10 9 31 31 H 1.08001 * 120.17830 * 359.97438 * 14 13 12 32 32 H 1.08002 * 120.80891 * 180.02562 * 15 14 13 33 33 H 1.07997 * 124.98696 * 180.02562 * 18 17 16 34 34 H 1.08997 * 109.48191 * 176.42349 * 23 10 9 35 35 H 1.08997 * 109.49004 * 56.39212 * 23 10 9 36 36 H 1.08995 * 109.62532 * 248.39207 * 24 7 2 37 37 H 1.09000 * 109.62052 * 8.77161 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7466 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0005 9 6 1.8230 -3.3825 1.1351 10 6 3.3399 -3.5070 0.9841 11 1 3.5729 -3.9117 -0.0008 12 7 3.8598 -4.4074 2.0160 13 6 3.8525 -5.7820 1.8072 14 6 3.3477 -6.2904 0.6104 15 6 3.3387 -7.6428 0.3998 16 6 3.8431 -8.4765 1.4053 17 7 3.9827 -9.8213 1.5275 18 6 4.5176 -10.0992 2.6800 19 7 4.7558 -8.9507 3.3731 20 1 5.1484 -8.8851 4.2577 21 6 4.3359 -7.8999 2.5875 22 7 4.3295 -6.5838 2.7441 23 6 3.9907 -2.1309 1.1352 24 6 3.5171 -1.2164 0.0000 25 1 -0.4850 0.8401 -0.0004 26 1 0.2037 -2.3409 0.1599 27 1 1.4201 -3.0192 -0.9538 28 1 1.5898 -2.9196 2.0940 29 1 1.3706 -4.3732 1.0900 30 1 4.2092 -4.0448 2.8450 31 1 2.9660 -5.6205 -0.1459 32 1 2.9526 -8.0568 -0.5200 33 1 4.7403 -11.0944 3.0355 34 1 5.0748 -2.2346 1.0901 35 1 3.7065 -1.6976 2.0941 36 1 3.8772 -1.6005 -0.9544 37 1 3.8982 -0.2072 0.1557 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167841189.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:17 Heat of formation + Delta-G solvation = 57.871563 kcal Electronic energy + Delta-G solvation = -20270.032895 eV Core-core repulsion = 17239.558423 eV Total energy + Delta-G solvation = -3030.474472 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.07491 -40.25443 -38.48072 -35.51971 -34.51111 -33.38660 -32.15656 -31.40447 -29.89225 -28.16802 -24.81806 -24.31114 -23.34048 -22.73648 -22.35370 -21.17336 -19.39356 -18.64894 -18.20216 -17.54672 -16.60062 -16.51584 -16.37574 -15.54429 -15.24019 -14.99910 -14.81857 -14.29578 -14.15333 -14.03834 -13.80517 -13.64129 -13.29478 -12.72859 -12.64335 -12.52068 -12.06046 -12.01468 -11.88546 -11.72806 -11.43739 -11.01749 -10.73336 -10.52350 -10.32019 -10.15366 -9.84321 -8.40346 -8.14388 -6.08880 0.08773 0.45033 1.42385 1.43552 1.50955 1.58464 1.98645 2.42775 2.44200 2.94414 3.14676 3.38514 3.71626 3.95552 3.98969 4.13679 4.23288 4.37012 4.49829 4.65949 4.74551 4.83202 4.96440 5.00872 5.05075 5.09208 5.15711 5.24339 5.24538 5.30863 5.60653 5.63507 5.66929 5.79043 5.87230 6.01945 6.35939 6.43939 6.68928 6.92397 6.98588 7.18707 7.49347 8.96412 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.048246 B = 0.003820 C = 0.003688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.222088 B = 7327.706950 C = 7589.782221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.021 3.979 3 Si 0.942 3.058 4 H -0.264 1.264 5 H -0.299 1.299 6 H -0.264 1.264 7 C -0.499 4.499 8 C 0.009 3.991 9 C -0.108 4.108 10 C 0.176 3.824 11 H 0.081 0.919 12 N -0.707 5.707 13 C 0.435 3.565 14 C -0.235 4.235 15 C 0.011 3.989 16 C -0.083 4.083 17 N -0.517 5.517 18 C 0.270 3.730 19 N -0.583 5.583 20 H 0.439 0.561 21 C 0.268 3.732 22 N -0.578 5.578 23 C -0.107 4.107 24 C -0.011 4.011 25 H 0.262 0.738 26 H 0.022 0.978 27 H 0.008 0.992 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.404 0.596 31 H 0.148 0.852 32 H 0.156 0.844 33 H 0.273 0.727 34 H 0.069 0.931 35 H 0.053 0.947 36 H 0.031 0.969 37 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.051 -15.884 5.980 20.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.177 4.177 3 Si 0.769 3.231 4 H -0.189 1.189 5 H -0.226 1.226 6 H -0.189 1.189 7 C -0.519 4.519 8 C -0.029 4.029 9 C -0.147 4.147 10 C 0.072 3.928 11 H 0.099 0.901 12 N -0.338 5.338 13 C 0.190 3.810 14 C -0.261 4.261 15 C -0.016 4.016 16 C -0.203 4.203 17 N -0.237 5.237 18 C -0.018 4.018 19 N -0.201 5.201 20 H 0.281 0.719 21 C 0.030 3.970 22 N -0.305 5.305 23 C -0.145 4.145 24 C -0.049 4.049 25 H 0.071 0.929 26 H 0.041 0.959 27 H 0.027 0.973 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.239 0.761 31 H 0.166 0.834 32 H 0.174 0.826 33 H 0.288 0.712 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.049 0.951 37 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 10.885 -15.932 5.885 20.172 hybrid contribution -0.016 1.605 0.680 1.743 sum 10.868 -14.327 6.566 19.144 Atomic orbital electron populations 1.69977 1.07779 1.27453 1.52110 1.25616 0.95293 1.01812 0.94991 0.85815 0.78305 0.79391 0.79597 1.18925 1.22619 1.18875 1.20670 0.91358 0.91740 1.48083 1.19312 0.96896 0.93492 0.93200 1.21904 0.95384 0.97922 0.99513 1.20812 0.92709 0.89008 0.90259 0.90122 1.44861 1.66637 1.00795 1.21506 1.18118 0.88966 0.85400 0.88499 1.21258 1.09510 0.96162 0.99156 1.20475 0.92557 0.91073 0.97457 1.19705 1.11334 0.91831 0.97412 1.70288 1.20883 1.12578 1.19942 1.26327 0.95730 0.92682 0.87040 1.42860 1.53917 1.04143 1.19209 0.71864 1.18769 0.98769 0.87643 0.91835 1.65696 1.28666 1.02246 1.33854 1.21726 0.98746 0.93910 1.00124 1.19624 0.94395 0.95654 0.95232 0.92926 0.95877 0.97342 0.94476 0.93839 0.76067 0.83404 0.82646 0.71166 0.91265 0.92829 0.95065 0.95092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.21 12.73 21.45 0.27 -53.93 16 2 C 0.02 1.12 5.46 84.65 0.46 1.59 16 3 Si 0.94 42.21 26.80 68.60 1.84 44.05 16 4 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 5 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 6 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.50 -25.00 5.51 -16.17 -0.09 -25.09 16 8 C 0.01 0.44 5.97 30.11 0.18 0.62 16 9 C -0.11 -4.33 5.39 30.65 0.17 -4.17 16 10 C 0.18 5.99 2.04 44.96 0.09 6.08 16 11 H 0.08 2.68 6.43 -2.39 -0.02 2.67 16 12 N -0.71 -21.76 5.24 -324.50 -1.70 -23.46 16 13 C 0.44 13.83 7.62 133.19 1.01 14.84 16 14 C -0.24 -7.04 8.70 22.25 0.19 -6.84 16 15 C 0.01 0.31 10.16 22.38 0.23 0.54 16 16 C -0.08 -2.43 7.24 39.51 0.29 -2.15 16 17 N -0.52 -13.18 11.28 -191.74 -2.16 -15.34 16 18 C 0.27 4.24 12.98 180.00 2.34 6.58 16 19 N -0.58 -10.60 6.22 -195.81 -1.22 -11.82 16 20 H 0.44 4.91 8.96 -92.71 -0.83 4.08 16 21 C 0.27 7.61 8.45 133.77 1.13 8.74 16 22 N -0.58 -18.23 10.42 -190.17 -1.98 -20.21 16 23 C -0.11 -3.72 5.40 30.67 0.17 -3.55 16 24 C -0.01 -0.45 5.60 30.12 0.17 -0.29 16 25 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 26 H 0.02 1.25 7.07 -2.39 -0.02 1.24 16 27 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.04 1.65 7.63 -2.39 -0.02 1.63 16 30 H 0.40 11.64 8.72 -92.71 -0.81 10.84 16 31 H 0.15 4.27 6.03 -2.91 -0.02 4.25 16 32 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 33 H 0.27 0.76 8.06 -2.91 -0.02 0.73 16 34 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.03 1.26 5.17 -2.39 -0.01 1.25 16 Total: -1.00 -67.54 299.68 0.87 -66.67 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -0.51 Total: 17.15 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: 6.33 Total: -3.10 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -6.79 Total: -124.77 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.84 Total: 44.05 kcal Total: -67.54 0.87 -66.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167841189.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.541 kcal (2) G-P(sol) polarization free energy of solvation -67.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds