Wall clock time and date at job start Mon Mar 30 2020 02:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 120.00081 * 2 1 4 4 H 1.48504 * 109.47070 * 269.99585 * 3 2 1 5 5 H 1.48501 * 109.47408 * 30.00042 * 3 2 1 6 6 H 1.48505 * 109.47181 * 150.00346 * 3 2 1 7 7 C 1.37883 * 119.99818 * 179.97438 * 2 1 3 8 8 C 1.51269 * 120.84896 * 180.02562 * 7 2 1 9 9 C 1.53245 * 108.48208 * 231.36959 * 8 7 2 10 10 C 1.52951 * 109.39740 * 305.26434 * 9 8 7 11 11 H 1.08995 * 109.41459 * 303.63388 * 10 9 8 12 12 N 1.46505 * 109.41249 * 183.77432 * 10 9 8 13 13 C 1.38327 * 119.99870 * 84.86163 * 12 10 9 14 14 N 1.32996 * 120.83833 * 0.02562 * 13 12 10 15 15 C 1.32078 * 121.03026 * 179.97438 * 14 13 12 16 16 N 1.31554 * 122.71876 * 359.56259 * 15 14 13 17 17 C 1.33202 * 120.70864 * 0.69195 * 16 15 14 18 18 N 1.36773 * 134.30336 * 179.18754 * 17 16 15 19 19 H 0.97001 * 124.98659 * 0.04880 * 18 17 16 20 20 C 1.37095 * 110.02696 * 180.02562 * 18 17 16 21 21 C 1.34309 * 109.80889 * 359.97438 * 20 18 17 22 22 C 1.40301 * 120.84004 * 179.97438 * 13 12 10 23 23 C 1.52963 * 109.75993 * 63.70682 * 10 9 8 24 24 C 1.51267 * 120.85103 * 0.02562 * 7 2 1 25 25 H 0.96999 * 119.99770 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.62649 * 351.03782 * 8 7 2 27 27 H 1.08990 * 109.62811 * 111.42012 * 8 7 2 28 28 H 1.09000 * 109.42421 * 185.32081 * 9 8 7 29 29 H 1.09000 * 109.54252 * 65.28287 * 9 8 7 30 30 H 0.97003 * 120.00090 * 264.85693 * 12 10 9 31 31 H 1.08003 * 118.63938 * 180.02562 * 15 14 13 32 32 H 1.08002 * 125.09695 * 180.02562 * 20 18 17 33 33 H 1.08002 * 126.59316 * 179.97438 * 21 20 18 34 34 H 1.08997 * 109.48180 * 56.34553 * 23 10 9 35 35 H 1.09000 * 109.47890 * 176.38729 * 23 10 9 36 36 H 1.09005 * 109.62210 * 8.96133 * 24 7 2 37 37 H 1.08992 * 109.62911 * 248.38822 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 6 3.5170 -1.2166 0.0011 9 6 3.9897 -2.1313 -1.1339 10 6 3.3402 -3.5076 -0.9811 11 1 3.5739 -3.9111 0.0041 12 7 3.8605 -4.4088 -2.0123 13 6 5.0469 -5.0884 -1.8024 14 7 5.7285 -4.9365 -0.6706 15 6 6.8615 -5.5839 -0.4659 16 7 7.3762 -6.4127 -1.3484 17 6 6.7698 -6.6271 -2.5148 18 7 7.0521 -7.3940 -3.6116 19 1 7.8323 -7.9625 -3.7068 20 6 6.0704 -7.2417 -4.5563 21 6 5.1367 -6.3862 -4.1087 22 6 5.5610 -5.9561 -2.7777 23 6 1.8232 -3.3833 -1.1329 24 6 1.2677 -2.5152 0.0005 25 1 -0.4850 0.8401 0.0004 26 1 3.8982 -0.2080 -0.1589 27 1 3.8772 -1.5967 0.9570 28 1 5.0740 -2.2339 -1.0890 29 1 3.7047 -1.6992 -2.0931 30 1 3.3730 -4.5290 -2.8423 31 1 7.3831 -5.4321 0.4675 32 1 6.0503 -7.7361 -5.5163 33 1 4.2465 -6.0724 -4.6335 34 1 1.5906 -2.9210 -2.0921 35 1 1.3710 -4.3740 -1.0873 36 1 0.2037 -2.3409 -0.1598 37 1 1.4192 -3.0189 0.9551 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167842109.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:57 Heat of formation + Delta-G solvation = 54.004911 kcal Electronic energy + Delta-G solvation = -20445.625883 eV Core-core repulsion = 17414.983741 eV Total energy + Delta-G solvation = -3030.642143 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.62250 -39.86227 -38.85432 -36.34200 -34.11752 -32.68305 -31.82533 -31.43869 -30.01243 -28.49628 -24.83286 -24.47801 -23.34810 -23.03879 -21.48473 -21.19034 -20.02205 -18.40146 -18.03305 -17.03751 -16.71190 -16.41515 -16.30666 -15.40483 -15.25424 -15.08031 -14.63241 -14.37295 -14.19092 -13.98559 -13.92856 -13.87017 -13.42180 -12.88932 -12.71998 -12.54322 -12.19029 -11.87497 -11.77971 -11.49424 -11.38491 -10.87578 -10.59709 -10.52593 -10.08613 -10.00252 -9.79490 -8.46903 -8.15489 -6.08894 0.18592 0.58088 1.38880 1.43044 1.51576 1.80647 1.88447 2.23535 2.42620 3.11101 3.13348 3.47744 3.70552 3.89860 4.05937 4.10101 4.24705 4.34755 4.57318 4.73891 4.76358 4.82339 4.95121 5.00434 5.10593 5.16500 5.27095 5.27791 5.46305 5.46536 5.59953 5.64757 5.77919 5.82482 5.91825 5.96316 6.27938 6.37102 6.51548 6.87670 6.96817 7.49133 7.54860 8.95328 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033464 B = 0.004345 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.517819 B = 6443.382593 C = 6729.285765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.025 3.975 3 Si 0.938 3.062 4 H -0.274 1.274 5 H -0.292 1.292 6 H -0.257 1.257 7 C -0.497 4.497 8 C -0.013 4.013 9 C -0.101 4.101 10 C 0.178 3.822 11 H 0.067 0.933 12 N -0.689 5.689 13 C 0.475 3.525 14 N -0.620 5.620 15 C 0.347 3.653 16 N -0.593 5.593 17 C 0.311 3.689 18 N -0.561 5.561 19 H 0.433 0.567 20 C 0.057 3.943 21 C -0.187 4.187 22 C -0.286 4.286 23 C -0.103 4.103 24 C 0.010 3.990 25 H 0.263 0.737 26 H 0.029 0.971 27 H 0.018 0.982 28 H 0.042 0.958 29 H 0.045 0.955 30 H 0.415 0.585 31 H 0.219 0.781 32 H 0.227 0.773 33 H 0.166 0.834 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.032 0.968 37 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.347 -14.277 -10.306 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.182 1.182 7 C -0.516 4.516 8 C -0.051 4.051 9 C -0.140 4.140 10 C 0.074 3.926 11 H 0.086 0.914 12 N -0.319 5.319 13 C 0.226 3.774 14 N -0.350 5.350 15 C 0.056 3.944 16 N -0.319 5.319 17 C 0.072 3.928 18 N -0.170 5.170 19 H 0.273 0.727 20 C -0.068 4.068 21 C -0.213 4.213 22 C -0.300 4.300 23 C -0.141 4.141 24 C -0.028 4.028 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.037 0.963 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.253 0.747 31 H 0.235 0.765 32 H 0.243 0.757 33 H 0.184 0.816 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges 12.692 -14.052 -9.439 21.158 hybrid contribution -0.271 0.785 -0.696 1.083 sum 12.421 -13.267 -10.135 20.809 Atomic orbital electron populations 1.69957 1.07527 1.27432 1.52066 1.25550 0.95315 1.01585 0.94916 0.85846 0.79194 0.79901 0.78600 1.19929 1.21823 1.18187 1.20613 0.90959 0.91907 1.48155 1.19706 0.94814 0.95694 0.94931 1.21751 0.97651 0.95498 0.99119 1.20638 0.92995 0.88465 0.90513 0.91449 1.44798 1.20788 1.45204 1.21080 1.18318 0.85902 0.85446 0.87755 1.68136 1.12333 1.32209 1.22311 1.24827 0.87420 0.85152 0.97001 1.67406 1.37447 1.24512 1.02576 1.18504 0.91679 0.93363 0.89278 1.41578 1.24126 1.39477 1.11782 0.72720 1.22564 0.87816 1.00926 0.95447 1.21814 1.03010 1.03342 0.93106 1.20210 1.01742 1.07954 1.00141 1.21714 0.93387 0.98676 1.00339 1.19273 0.97175 0.93354 0.92966 0.92800 0.95273 0.96343 0.93903 0.93573 0.74726 0.76517 0.75698 0.81648 0.92901 0.92685 0.94970 0.98194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.27 12.73 21.45 0.27 -54.00 16 2 C 0.02 1.35 5.46 84.66 0.46 1.81 16 3 Si 0.94 43.53 27.27 68.60 1.87 45.40 16 4 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 6 H -0.26 -11.45 6.46 99.48 0.64 -10.81 16 7 C -0.50 -26.12 5.51 -16.17 -0.09 -26.21 16 8 C -0.01 -0.62 5.60 30.11 0.17 -0.45 16 9 C -0.10 -4.13 5.51 30.66 0.17 -3.96 16 10 C 0.18 6.77 2.38 44.96 0.11 6.87 16 11 H 0.07 2.81 7.57 -2.39 -0.02 2.79 16 12 N -0.69 -21.88 5.20 -323.78 -1.68 -23.56 16 13 C 0.48 15.53 7.52 133.40 1.00 16.53 16 14 N -0.62 -21.25 9.37 -197.17 -1.85 -23.09 16 15 C 0.35 10.25 12.23 180.87 2.21 12.46 16 16 N -0.59 -17.35 10.47 -197.87 -2.07 -19.42 16 17 C 0.31 8.40 8.48 133.96 1.14 9.54 16 18 N -0.56 -9.72 6.03 -192.30 -1.16 -10.88 16 19 H 0.43 4.82 8.96 -92.71 -0.83 3.99 16 20 C 0.06 0.77 11.83 82.97 0.98 1.75 16 21 C -0.19 -3.65 10.98 23.43 0.26 -3.40 16 22 C -0.29 -8.07 6.32 -20.11 -0.13 -8.19 16 23 C -0.10 -4.13 5.40 30.65 0.17 -3.97 16 24 C 0.01 0.51 5.97 30.09 0.18 0.69 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.03 1.34 4.78 -2.39 -0.01 1.32 16 27 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 30 H 0.42 11.15 8.53 -92.71 -0.79 10.36 16 31 H 0.22 4.85 8.06 -2.91 -0.02 4.83 16 32 H 0.23 0.66 8.06 -2.91 -0.02 0.63 16 33 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 34 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 36 H 0.03 1.76 7.07 -2.38 -0.02 1.74 16 37 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 Total: -1.00 -68.36 303.20 1.44 -66.92 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -0.57 Total: 15.16 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 6.63 Total: 3.48 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -6.49 Total: -130.96 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.87 Total: 45.40 kcal Total: -68.36 1.44 -66.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167842109.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.924 kcal (2) G-P(sol) polarization free energy of solvation -68.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds