Wall clock time and date at job start Mon Mar 30 2020 02:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00375 * 2 1 4 4 H 1.48500 * 109.46962 * 270.00012 * 3 2 1 5 5 H 1.48496 * 109.47036 * 29.99512 * 3 2 1 6 6 H 1.48500 * 109.47511 * 149.99617 * 3 2 1 7 7 C 1.37881 * 119.99814 * 179.97438 * 2 1 3 8 8 C 1.51262 * 120.84915 * 180.28675 * 7 2 1 9 9 C 1.53236 * 108.53353 * 231.06965 * 8 7 2 10 10 C 1.52954 * 109.40515 * 305.37271 * 9 8 7 11 11 H 1.09007 * 109.41410 * 303.49063 * 10 9 8 12 12 N 1.46502 * 109.35874 * 183.66763 * 10 9 8 13 13 C 1.39087 * 119.99643 * 84.67773 * 12 10 9 14 14 C 1.39074 * 120.99126 * 0.02562 * 13 12 10 15 15 C 1.38268 * 119.45122 * 179.97438 * 14 13 12 16 16 N 1.31825 * 121.43816 * 359.97438 * 15 14 13 17 17 C 1.32546 * 121.75140 * 0.02562 * 16 15 14 18 18 N 1.37793 * 133.73142 * 180.02562 * 17 16 15 19 19 H 0.97001 * 126.28042 * 359.92395 * 18 17 16 20 20 C 1.36218 * 107.43293 * 179.30534 * 18 17 16 21 21 N 1.30070 * 110.00524 * 0.57310 * 20 18 17 22 22 C 1.35658 * 109.48081 * 359.49188 * 21 20 18 23 23 C 1.52962 * 109.81860 * 63.59882 * 10 9 8 24 24 C 1.51276 * 120.84825 * 359.97438 * 7 2 1 25 25 H 0.96997 * 119.99564 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.62853 * 350.77940 * 8 7 2 27 27 H 1.08994 * 109.62831 * 111.35952 * 8 7 2 28 28 H 1.09002 * 109.48366 * 185.39419 * 9 8 7 29 29 H 1.09001 * 109.48205 * 65.35438 * 9 8 7 30 30 H 0.96993 * 120.00151 * 264.68403 * 12 10 9 31 31 H 1.07994 * 120.27876 * 359.97438 * 14 13 12 32 32 H 1.07997 * 119.28610 * 180.02562 * 15 14 13 33 33 H 1.08001 * 124.99391 * 180.02562 * 20 18 17 34 34 H 1.09003 * 109.48320 * 176.42559 * 23 10 9 35 35 H 1.08997 * 109.49150 * 56.38933 * 23 10 9 36 36 H 1.08997 * 109.62461 * 248.64378 * 24 7 2 37 37 H 1.08996 * 109.62473 * 9.02265 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 6 3.5170 -1.2166 0.0070 9 6 3.9954 -2.1344 -1.1230 10 6 3.3439 -3.5098 -0.9708 11 1 3.5738 -3.9124 0.0158 12 7 3.8683 -4.4120 -1.9991 13 6 5.0620 -5.0927 -1.7838 14 6 5.7743 -4.9326 -0.6001 15 6 6.9572 -5.6253 -0.4194 16 7 7.4270 -6.4370 -1.3458 17 6 6.7913 -6.6285 -2.4929 18 7 7.0470 -7.3985 -3.6067 19 1 7.8120 -7.9800 -3.7391 20 6 6.0214 -7.2037 -4.4818 21 7 5.1657 -6.3601 -3.9838 22 6 5.5808 -5.9679 -2.7533 23 6 1.8275 -3.3858 -1.1287 24 6 1.2676 -2.5152 0.0017 25 1 -0.4849 0.8401 -0.0004 26 1 3.8989 -0.2084 -0.1537 27 1 3.8734 -1.5979 0.9639 28 1 5.0793 -2.2380 -1.0730 29 1 3.7152 -1.7037 -2.0843 30 1 3.3831 -4.5346 -2.8299 31 1 5.4065 -4.2727 0.1717 32 1 7.5079 -5.4993 0.5010 33 1 5.9362 -7.6733 -5.4506 34 1 1.3750 -4.3764 -1.0826 35 1 1.5984 -2.9257 -2.0899 36 1 1.4162 -3.0164 0.9581 37 1 0.2038 -2.3411 -0.1590 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:42 Heat of formation + Delta-G solvation = 69.975153 kcal Electronic energy + Delta-G solvation = -20455.805508 eV Core-core repulsion = 17425.855887 eV Total energy + Delta-G solvation = -3029.949621 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.09971 -38.67862 -37.26409 -34.87193 -32.78308 -31.67846 -30.06703 -29.58127 -29.12309 -26.84987 -23.49101 -23.13534 -21.86755 -21.36321 -21.07364 -19.53077 -18.52969 -17.28135 -16.45110 -16.16892 -15.50561 -15.29761 -14.50412 -14.41446 -14.20902 -13.66803 -13.44971 -13.04638 -12.66376 -12.40366 -12.28307 -11.89508 -11.80576 -11.43055 -11.03593 -10.84410 -10.80236 -10.67383 -10.17847 -10.04169 -9.79060 -9.40408 -9.09801 -8.96755 -8.70080 -8.51281 -8.49774 -7.19019 -6.14925 -4.06300 1.17940 1.64292 2.68475 2.91056 3.24428 3.33812 3.34857 3.64387 4.09852 4.21145 4.34768 4.67398 4.98339 5.10221 5.14168 5.31872 5.54301 5.68469 5.77535 5.95543 6.09520 6.12842 6.19314 6.40825 6.54112 6.65236 6.71668 6.79901 6.84859 6.96077 7.04190 7.19548 7.34957 7.48596 7.60559 7.65146 7.76590 7.84227 7.98862 8.20311 8.32212 8.91393 9.49748 10.94570 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033422 B = 0.004336 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.564562 B = 6455.390588 C = 6747.616668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.266 1.266 7 C -0.491 4.491 8 C -0.013 4.013 9 C -0.119 4.119 10 C 0.153 3.847 11 H 0.075 0.925 12 N -0.707 5.707 13 C 0.325 3.675 14 C -0.289 4.289 15 C 0.187 3.813 16 N -0.549 5.549 17 C 0.280 3.720 18 N -0.594 5.594 19 H 0.424 0.576 20 C 0.237 3.763 21 N -0.472 5.472 22 C -0.078 4.078 23 C -0.114 4.114 24 C 0.014 3.986 25 H 0.265 0.735 26 H 0.032 0.968 27 H 0.019 0.981 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.404 0.596 31 H 0.144 0.856 32 H 0.160 0.840 33 H 0.217 0.783 34 H 0.037 0.963 35 H 0.055 0.945 36 H 0.006 0.994 37 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.753 -12.143 -5.565 17.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.126 4.126 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.191 1.191 7 C -0.510 4.510 8 C -0.051 4.051 9 C -0.158 4.158 10 C 0.050 3.950 11 H 0.093 0.907 12 N -0.328 5.328 13 C 0.205 3.795 14 C -0.319 4.319 15 C 0.023 3.977 16 N -0.268 5.268 17 C 0.044 3.956 18 N -0.210 5.210 19 H 0.262 0.738 20 C -0.051 4.051 21 N -0.191 5.191 22 C -0.201 4.201 23 C -0.153 4.153 24 C -0.024 4.024 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.056 0.944 29 H 0.072 0.928 30 H 0.240 0.760 31 H 0.161 0.839 32 H 0.177 0.823 33 H 0.233 0.767 34 H 0.055 0.945 35 H 0.074 0.926 36 H 0.025 0.975 37 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.405 -11.984 -5.707 17.500 hybrid contribution 0.573 0.724 -0.385 1.000 sum 11.978 -11.260 -6.092 17.532 Atomic orbital electron populations 1.69833 1.06182 1.27029 1.49576 1.24848 0.94712 0.98622 0.94428 0.86658 0.79971 0.83266 0.78466 1.20442 1.21613 1.19131 1.20027 0.89333 0.91458 1.50208 1.19724 0.96652 0.95123 0.93620 1.22026 0.97166 0.95323 1.01300 1.21209 0.95125 0.88832 0.89843 0.90689 1.45400 1.21004 1.45112 1.21325 1.17378 0.85660 0.86126 0.90332 1.21381 1.00250 1.11247 0.99065 1.22187 0.91825 0.88353 0.95316 1.66526 1.35802 1.23737 1.00776 1.18745 0.93038 0.94459 0.89346 1.42763 1.23770 1.40053 1.14387 0.73772 1.25104 0.84618 0.98584 0.96831 1.70176 1.27953 1.13005 1.07948 1.19085 0.98349 1.06977 0.95684 1.21926 0.92061 0.98795 1.02494 1.19342 0.98796 0.92709 0.91560 0.92527 0.94964 0.96263 0.94372 0.92752 0.76048 0.83875 0.82254 0.76681 0.94475 0.92621 0.97547 0.92052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.03 12.73 55.43 0.71 -24.33 16 2 C 0.08 2.05 5.46 -17.81 -0.10 1.95 16 3 Si 0.89 20.73 27.27 -169.99 -4.64 16.09 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.27 -6.01 6.46 56.52 0.36 -5.65 16 7 C -0.49 -12.45 5.51 -98.92 -0.55 -12.99 16 8 C -0.01 -0.29 5.59 -27.49 -0.15 -0.44 16 9 C -0.12 -2.34 5.47 -26.63 -0.15 -2.49 16 10 C 0.15 2.81 2.06 -67.97 -0.14 2.67 16 11 H 0.08 1.37 6.55 -51.92 -0.34 1.03 16 12 N -0.71 -11.90 5.23 -51.88 -0.27 -12.17 16 13 C 0.33 5.38 6.70 -83.39 -0.56 4.82 16 14 C -0.29 -4.35 8.90 -39.26 -0.35 -4.70 16 15 C 0.19 2.55 11.15 -17.54 -0.20 2.36 16 16 N -0.55 -8.21 10.39 -12.37 -0.13 -8.34 16 17 C 0.28 4.15 8.45 -155.61 -1.32 2.83 16 18 N -0.59 -6.25 6.22 -13.27 -0.08 -6.34 16 19 H 0.42 2.93 8.96 -40.82 -0.37 2.56 16 20 C 0.24 2.43 12.98 -89.65 -1.16 1.27 16 21 N -0.47 -6.96 11.28 -11.89 -0.13 -7.10 16 22 C -0.08 -1.26 7.13 -84.52 -0.60 -1.86 16 23 C -0.11 -2.30 5.40 -26.61 -0.14 -2.45 16 24 C 0.01 0.33 5.97 -27.46 -0.16 0.17 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.03 0.72 4.78 -51.93 -0.25 0.47 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.04 0.70 7.80 -51.93 -0.41 0.29 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.40 6.71 8.64 -40.82 -0.35 6.35 16 31 H 0.14 2.08 6.36 -52.49 -0.33 1.75 16 32 H 0.16 1.62 8.06 -52.49 -0.42 1.20 16 33 H 0.22 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.01 0.15 8.14 -51.93 -0.42 -0.28 16 37 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 LS Contribution 299.88 15.07 4.52 4.52 Total: -1.00 -30.78 299.88 -10.15 -40.93 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.54 Total: 5.61 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -5.58 Total: -8.88 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.09 Total: -58.26 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.64 Total: 16.09 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.78 -10.15 -40.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.901 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds