Wall clock time and date at job start Mon Mar 30 2020 02:03:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00375 * 2 1 4 4 H 1.48500 * 109.46962 * 270.00012 * 3 2 1 5 5 H 1.48496 * 109.47036 * 29.99512 * 3 2 1 6 6 H 1.48500 * 109.47511 * 149.99617 * 3 2 1 7 7 C 1.37881 * 119.99814 * 179.97438 * 2 1 3 8 8 C 1.51262 * 120.84915 * 180.28675 * 7 2 1 9 9 C 1.53236 * 108.53353 * 231.06965 * 8 7 2 10 10 C 1.52954 * 109.40515 * 305.37271 * 9 8 7 11 11 H 1.09007 * 109.41410 * 303.49063 * 10 9 8 12 12 N 1.46502 * 109.35874 * 183.66763 * 10 9 8 13 13 C 1.39087 * 119.99643 * 84.67773 * 12 10 9 14 14 C 1.39074 * 120.99126 * 0.02562 * 13 12 10 15 15 C 1.38268 * 119.45122 * 179.97438 * 14 13 12 16 16 N 1.31825 * 121.43816 * 359.97438 * 15 14 13 17 17 C 1.32546 * 121.75140 * 0.02562 * 16 15 14 18 18 N 1.37793 * 133.73142 * 180.02562 * 17 16 15 19 19 H 0.97001 * 126.28042 * 359.92395 * 18 17 16 20 20 C 1.36218 * 107.43293 * 179.30534 * 18 17 16 21 21 N 1.30070 * 110.00524 * 0.57310 * 20 18 17 22 22 C 1.35658 * 109.48081 * 359.49188 * 21 20 18 23 23 C 1.52962 * 109.81860 * 63.59882 * 10 9 8 24 24 C 1.51276 * 120.84825 * 359.97438 * 7 2 1 25 25 H 0.96997 * 119.99564 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.62853 * 350.77940 * 8 7 2 27 27 H 1.08994 * 109.62831 * 111.35952 * 8 7 2 28 28 H 1.09002 * 109.48366 * 185.39419 * 9 8 7 29 29 H 1.09001 * 109.48205 * 65.35438 * 9 8 7 30 30 H 0.96993 * 120.00151 * 264.68403 * 12 10 9 31 31 H 1.07994 * 120.27876 * 359.97438 * 14 13 12 32 32 H 1.07997 * 119.28610 * 180.02562 * 15 14 13 33 33 H 1.08001 * 124.99391 * 180.02562 * 20 18 17 34 34 H 1.09003 * 109.48320 * 176.42559 * 23 10 9 35 35 H 1.08997 * 109.49150 * 56.38933 * 23 10 9 36 36 H 1.08997 * 109.62461 * 248.64378 * 24 7 2 37 37 H 1.08996 * 109.62473 * 9.02265 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0462 -1.4001 5 1 1.4468 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0046 -1.1941 0.0005 8 6 3.5170 -1.2166 0.0070 9 6 3.9954 -2.1344 -1.1230 10 6 3.3439 -3.5098 -0.9708 11 1 3.5738 -3.9124 0.0158 12 7 3.8683 -4.4120 -1.9991 13 6 5.0620 -5.0927 -1.7838 14 6 5.7743 -4.9326 -0.6001 15 6 6.9572 -5.6253 -0.4194 16 7 7.4270 -6.4370 -1.3458 17 6 6.7913 -6.6285 -2.4929 18 7 7.0470 -7.3985 -3.6067 19 1 7.8120 -7.9800 -3.7391 20 6 6.0214 -7.2037 -4.4818 21 7 5.1657 -6.3601 -3.9838 22 6 5.5808 -5.9679 -2.7533 23 6 1.8275 -3.3858 -1.1287 24 6 1.2676 -2.5152 0.0017 25 1 -0.4849 0.8401 -0.0004 26 1 3.8989 -0.2084 -0.1537 27 1 3.8734 -1.5979 0.9639 28 1 5.0793 -2.2380 -1.0730 29 1 3.7152 -1.7037 -2.0843 30 1 3.3831 -4.5346 -2.8299 31 1 5.4065 -4.2727 0.1717 32 1 7.5079 -5.4993 0.5010 33 1 5.9362 -7.6733 -5.4506 34 1 1.3750 -4.3764 -1.0826 35 1 1.5984 -2.9257 -2.0899 36 1 1.4162 -3.0164 0.9581 37 1 0.2038 -2.3411 -0.1590 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167844087.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:41 Heat of formation + Delta-G solvation = 50.729033 kcal Electronic energy + Delta-G solvation = -20456.640082 eV Core-core repulsion = 17425.855887 eV Total energy + Delta-G solvation = -3030.784195 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.08805 -39.95010 -38.58938 -36.32590 -34.20316 -33.12270 -31.63710 -30.82816 -30.44583 -28.41804 -24.67385 -24.35422 -23.44898 -22.95045 -22.13910 -21.13103 -19.64458 -18.35873 -17.98753 -17.47144 -16.62835 -16.51965 -16.38391 -15.53200 -15.36388 -15.12777 -14.68181 -14.55765 -14.33677 -14.03851 -13.67633 -13.38930 -13.13212 -12.96367 -12.75315 -12.57187 -12.29103 -11.88105 -11.85663 -11.67926 -11.42995 -10.94486 -10.74250 -10.53757 -10.38615 -10.11129 -9.54144 -8.39319 -8.16291 -6.10154 0.16643 0.51061 1.39176 1.42950 1.50986 1.81902 1.98030 2.35438 2.41809 2.99742 3.13210 3.32841 3.73389 3.97619 4.06681 4.13422 4.18634 4.37825 4.46968 4.61803 4.70928 4.90071 4.93455 4.97948 5.06711 5.10975 5.13233 5.18651 5.26759 5.29146 5.59117 5.63841 5.74600 5.77818 5.83332 6.21980 6.34592 6.43157 6.68652 6.90578 6.96537 7.15741 7.48018 8.94610 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033422 B = 0.004336 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 837.564562 B = 6455.390588 C = 6747.616668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.022 3.978 3 Si 0.939 3.061 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.250 1.250 7 C -0.498 4.498 8 C -0.015 4.015 9 C -0.110 4.110 10 C 0.170 3.830 11 H 0.079 0.921 12 N -0.711 5.711 13 C 0.300 3.700 14 C -0.292 4.292 15 C 0.184 3.816 16 N -0.554 5.554 17 C 0.259 3.741 18 N -0.580 5.580 19 H 0.442 0.558 20 C 0.267 3.733 21 N -0.519 5.519 22 C -0.097 4.097 23 C -0.103 4.103 24 C 0.011 3.989 25 H 0.262 0.738 26 H 0.031 0.969 27 H 0.030 0.970 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.403 0.597 31 H 0.146 0.854 32 H 0.194 0.806 33 H 0.270 0.730 34 H 0.051 0.949 35 H 0.043 0.957 36 H 0.007 0.993 37 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.451 -13.619 -6.360 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.176 4.176 3 Si 0.766 3.234 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.175 1.175 7 C -0.517 4.517 8 C -0.053 4.053 9 C -0.149 4.149 10 C 0.066 3.934 11 H 0.097 0.903 12 N -0.334 5.334 13 C 0.182 3.818 14 C -0.322 4.322 15 C 0.019 3.981 16 N -0.274 5.274 17 C 0.022 3.978 18 N -0.197 5.197 19 H 0.284 0.716 20 C -0.021 4.021 21 N -0.239 5.239 22 C -0.219 4.219 23 C -0.142 4.142 24 C -0.027 4.027 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.238 0.762 31 H 0.164 0.836 32 H 0.210 0.790 33 H 0.286 0.714 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.025 0.975 37 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 14.171 -13.504 -6.508 20.629 hybrid contribution -0.196 1.002 -0.204 1.042 sum 13.975 -12.502 -6.712 19.916 Atomic orbital electron populations 1.69973 1.07688 1.27422 1.52107 1.25600 0.95308 1.01780 0.94952 0.85829 0.79413 0.79764 0.78428 1.20378 1.22018 1.17450 1.20651 0.91277 0.91729 1.48078 1.19744 0.94489 0.95911 0.95157 1.21889 0.98279 0.95377 0.99386 1.20828 0.93336 0.88653 0.90627 0.90271 1.45058 1.21726 1.45702 1.20889 1.17636 0.85763 0.86983 0.91382 1.21544 1.00624 1.11375 0.98647 1.22721 0.91579 0.87555 0.96195 1.66623 1.35889 1.23810 1.01036 1.19071 0.93040 0.95358 0.90284 1.42831 1.24429 1.39381 1.13040 0.71614 1.26232 0.82594 0.95812 0.97502 1.70196 1.30083 1.15574 1.08037 1.19327 0.99015 1.07194 0.96377 1.21704 0.93775 0.98538 1.00151 1.19291 0.97059 0.93398 0.92978 0.92876 0.95054 0.95170 0.92543 0.94082 0.76181 0.83604 0.78967 0.71423 0.93024 0.93812 0.97486 0.95368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.29 12.73 21.45 0.27 -54.02 16 2 C 0.02 1.18 5.46 84.65 0.46 1.64 16 3 Si 0.94 42.76 27.27 68.60 1.87 44.63 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.25 -10.64 6.46 99.48 0.64 -10.00 16 7 C -0.50 -25.42 5.51 -16.17 -0.09 -25.51 16 8 C -0.01 -0.65 5.59 30.11 0.17 -0.48 16 9 C -0.11 -4.21 5.47 30.66 0.17 -4.04 16 10 C 0.17 6.08 2.06 44.96 0.09 6.17 16 11 H 0.08 2.79 6.55 -2.38 -0.02 2.78 16 12 N -0.71 -23.42 5.23 -318.05 -1.66 -25.08 16 13 C 0.30 9.59 6.70 38.75 0.26 9.85 16 14 C -0.29 -8.29 8.90 22.48 0.20 -8.09 16 15 C 0.18 4.60 11.15 84.70 0.94 5.54 16 16 N -0.55 -15.32 10.39 -193.06 -2.01 -17.33 16 17 C 0.26 7.10 8.45 133.72 1.13 8.23 16 18 N -0.58 -10.32 6.22 -195.90 -1.22 -11.54 16 19 H 0.44 4.49 8.96 -92.71 -0.83 3.66 16 20 C 0.27 4.52 12.98 180.01 2.34 6.85 16 21 N -0.52 -14.28 11.28 -191.52 -2.16 -16.44 16 22 C -0.10 -2.99 7.13 39.62 0.28 -2.71 16 23 C -0.10 -4.18 5.40 30.67 0.17 -4.02 16 24 C 0.01 0.52 5.97 30.12 0.18 0.70 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.03 1.35 4.78 -2.39 -0.01 1.34 16 27 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.06 1.95 7.80 -2.39 -0.02 1.93 16 29 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.40 13.30 8.64 -92.71 -0.80 12.49 16 31 H 0.15 3.97 6.36 -2.91 -0.02 3.95 16 32 H 0.19 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.27 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 37 H 0.03 1.53 7.07 -2.39 -0.02 1.52 16 Total: -1.00 -68.12 299.88 0.83 -67.29 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -0.57 Total: 18.34 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 6.30 Total: -5.85 kcal Atomic # 7 Polarization: -117.64 SS G_CDS: -6.77 Total: -124.41 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.87 Total: 44.63 kcal Total: -68.12 0.83 -67.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844087.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.022 kcal (2) G-P(sol) polarization free energy of solvation -68.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.293 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds