Wall clock time and date at job start Mon Mar 30 2020 02:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99620 * 2 1 4 4 H 1.48495 * 109.47184 * 240.00235 * 3 2 1 5 5 H 1.48497 * 109.47205 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47139 * 119.99905 * 3 2 1 7 7 C 1.37871 * 120.00385 * 180.02562 * 2 1 3 8 8 C 1.51270 * 120.84944 * 0.02562 * 7 2 1 9 9 C 1.53227 * 108.53739 * 231.32602 * 8 7 2 10 10 C 1.52966 * 109.40419 * 305.37295 * 9 8 7 11 11 H 1.09002 * 109.41120 * 303.56278 * 10 9 8 12 12 N 1.46498 * 109.41129 * 183.70383 * 10 9 8 13 13 C 1.39756 * 119.99761 * 154.85682 * 12 10 9 14 14 C 1.38392 * 120.25135 * 0.02564 * 13 12 10 15 15 C 1.38811 * 120.47557 * 179.97438 * 14 13 12 16 16 C 1.36552 * 120.77114 * 359.97438 * 15 14 13 17 17 C 1.39815 * 119.92089 * 359.97438 * 16 15 14 18 18 N 1.34844 * 134.74477 * 179.97438 * 17 16 15 19 19 N 1.28661 * 109.24504 * 179.97438 * 18 17 16 20 20 N 1.28823 * 111.72209 * 0.02562 * 19 18 17 21 21 H 0.97003 * 125.93190 * 180.02562 * 20 19 18 22 22 C 1.37319 * 108.13571 * 359.97438 * 20 19 18 23 23 C 1.52957 * 109.75816 * 63.63095 * 10 9 8 24 24 C 1.51268 * 120.85157 * 179.97438 * 7 2 1 25 25 H 0.96991 * 120.00175 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.63006 * 111.61136 * 8 7 2 27 27 H 1.08998 * 109.62568 * 351.04085 * 8 7 2 28 28 H 1.09003 * 109.48352 * 185.39481 * 9 8 7 29 29 H 1.08999 * 109.49627 * 65.35525 * 9 8 7 30 30 H 0.96994 * 120.00146 * 334.85689 * 12 10 9 31 31 H 1.08005 * 119.76153 * 359.97145 * 14 13 12 32 32 H 1.08001 * 119.61680 * 180.02562 * 15 14 13 33 33 H 1.08003 * 120.03743 * 180.27745 * 16 15 14 34 34 H 1.09000 * 109.48289 * 56.35126 * 23 10 9 35 35 H 1.08997 * 109.47939 * 176.38827 * 23 10 9 36 36 H 1.09001 * 109.62387 * 248.38835 * 24 7 2 37 37 H 1.09003 * 109.62747 * 8.76549 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0047 -1.1940 -0.0005 8 6 1.2679 -2.5151 -0.0017 9 6 1.8231 -3.3835 1.1321 10 6 3.3402 -3.5077 0.9810 11 1 3.5742 -3.9109 -0.0043 12 7 3.8600 -4.4091 2.0122 13 6 5.0588 -5.0955 1.8004 14 6 5.7593 -4.9272 0.6188 15 6 6.9507 -5.6063 0.4038 16 6 7.4541 -6.4510 1.3512 17 6 6.7671 -6.6384 2.5544 18 7 6.9786 -7.3756 3.6635 19 7 6.0161 -7.1781 4.4940 20 7 5.1477 -6.3481 4.0288 21 1 4.3425 -6.0529 4.4821 22 6 5.5603 -5.9530 2.7800 23 6 3.9895 -2.1313 1.1344 24 6 3.5172 -1.2163 -0.0011 25 1 -0.4850 0.8399 0.0004 26 1 1.4202 -3.0185 -0.9565 27 1 0.2038 -2.3410 0.1579 28 1 1.3708 -4.3742 1.0861 29 1 1.5900 -2.9217 2.0915 30 1 3.3722 -4.5295 2.8418 31 1 5.3761 -4.2628 -0.1416 32 1 7.4862 -5.4643 -0.5233 33 1 8.3845 -6.9700 1.1734 34 1 3.7040 -1.6995 2.0936 35 1 5.0737 -2.2339 1.0899 36 1 3.8772 -1.5996 -0.9559 37 1 3.8983 -0.2072 0.1554 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:04 Heat of formation + Delta-G solvation = 95.112336 kcal Electronic energy + Delta-G solvation = -20496.603890 eV Core-core repulsion = 17467.744299 eV Total energy + Delta-G solvation = -3028.859591 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.10132 -38.84457 -36.99685 -34.75792 -33.16464 -31.78165 -30.40210 -29.94564 -28.82686 -26.83050 -23.98097 -23.18793 -22.50090 -21.61306 -21.18242 -19.71374 -18.52286 -17.77353 -16.37111 -16.19944 -15.89913 -15.46145 -14.63041 -14.54506 -14.20525 -13.58301 -13.15562 -12.77595 -12.37179 -12.20307 -12.15698 -11.87676 -11.81216 -11.71063 -11.39680 -11.13770 -10.92318 -10.87231 -10.69070 -10.29709 -10.17199 -9.93200 -9.46058 -9.11352 -8.90132 -8.77657 -8.59216 -7.10721 -6.22346 -4.14376 0.79823 1.42249 2.45946 2.50548 3.20344 3.28415 3.28837 3.45801 3.79876 4.13677 4.28217 4.79668 4.91247 4.99758 5.05546 5.36142 5.43971 5.52093 5.67223 5.86127 5.97435 6.02000 6.29593 6.32158 6.43224 6.52539 6.55403 6.63829 6.70146 6.73653 6.82364 6.86779 6.92795 7.25118 7.38193 7.51919 7.55384 7.66734 7.77921 8.23725 8.31030 8.83124 9.42140 10.87175 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.032817 B = 0.004366 C = 0.004171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.020800 B = 6411.489740 C = 6711.328914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.078 3.922 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.494 4.494 8 C 0.014 3.986 9 C -0.114 4.114 10 C 0.159 3.841 11 H 0.075 0.925 12 N -0.737 5.737 13 C 0.255 3.745 14 C -0.197 4.197 15 C -0.053 4.053 16 C -0.136 4.136 17 C 0.055 3.945 18 N -0.266 5.266 19 N -0.023 5.023 20 N -0.411 5.411 21 H 0.447 0.553 22 C -0.035 4.035 23 C -0.119 4.119 24 C -0.009 4.009 25 H 0.266 0.734 26 H 0.007 0.993 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.053 0.947 30 H 0.389 0.611 31 H 0.139 0.861 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.052 0.948 35 H 0.038 0.962 36 H 0.020 0.980 37 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.700 -8.851 3.123 12.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.125 4.125 3 Si 0.719 3.281 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.200 1.200 7 C -0.512 4.512 8 C -0.024 4.024 9 C -0.153 4.153 10 C 0.056 3.944 11 H 0.093 0.907 12 N -0.362 5.362 13 C 0.145 3.855 14 C -0.225 4.225 15 C -0.075 4.075 16 C -0.161 4.161 17 C -0.071 4.071 18 N -0.142 5.142 19 N -0.005 5.005 20 N -0.140 5.140 21 H 0.293 0.707 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.047 4.047 25 H 0.076 0.924 26 H 0.025 0.975 27 H 0.079 0.921 28 H 0.054 0.946 29 H 0.072 0.928 30 H 0.222 0.778 31 H 0.157 0.843 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.038 0.962 37 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 8.905 -9.531 4.121 13.680 hybrid contribution -0.691 1.829 -0.036 1.955 sum 8.214 -7.702 4.085 11.979 Atomic orbital electron populations 1.69811 1.06184 1.27244 1.49333 1.24841 0.94727 0.98625 0.94339 0.86654 0.79422 0.82959 0.79040 1.19884 1.21799 1.20039 1.20001 0.89280 0.91461 1.50505 1.19332 0.98818 0.92720 0.91540 1.21929 0.92236 0.98673 1.02457 1.21099 0.94895 0.88635 0.89727 0.90692 1.45328 1.21838 1.47803 1.21249 1.16864 0.87451 0.89728 0.91410 1.20601 0.97793 1.07092 0.97036 1.20522 0.94604 0.93992 0.98383 1.19644 1.01555 1.03603 0.91295 1.19757 0.94092 0.97273 0.95944 1.75329 1.16938 1.21400 1.00550 1.77891 0.95884 1.05542 1.21173 1.44671 1.22042 1.34233 1.13039 0.70695 1.19469 1.00150 1.06748 0.89367 1.22024 0.97264 0.95414 1.01146 1.19610 0.96694 0.94716 0.93692 0.92397 0.97486 0.92069 0.94596 0.92823 0.77761 0.84292 0.85017 0.85269 0.92876 0.94313 0.96152 0.95512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.39 12.73 55.43 0.71 -23.69 16 2 C 0.08 2.02 5.46 -17.82 -0.10 1.92 16 3 Si 0.89 20.34 26.80 -169.99 -4.56 15.79 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.49 -12.04 5.51 -98.92 -0.55 -12.59 16 8 C 0.01 0.31 5.97 -27.49 -0.16 0.15 16 9 C -0.11 -2.12 5.40 -26.63 -0.14 -2.26 16 10 C 0.16 2.63 2.05 -67.97 -0.14 2.49 16 11 H 0.08 1.25 6.49 -51.93 -0.34 0.92 16 12 N -0.74 -10.12 5.25 -52.16 -0.27 -10.39 16 13 C 0.25 3.50 6.65 -83.71 -0.56 2.95 16 14 C -0.20 -2.60 8.84 -39.31 -0.35 -2.94 16 15 C -0.05 -0.61 9.96 -39.98 -0.40 -1.01 16 16 C -0.14 -1.69 10.05 -39.60 -0.40 -2.09 16 17 C 0.05 0.80 7.36 -85.06 -0.63 0.17 16 18 N -0.27 -4.11 12.43 32.03 0.40 -3.72 16 19 N -0.02 -0.32 13.29 60.35 0.80 0.48 16 20 N -0.41 -4.88 7.07 32.41 0.23 -4.65 16 21 H 0.45 3.67 8.96 -190.22 -1.71 1.96 16 22 C -0.03 -0.48 7.27 -84.04 -0.61 -1.09 16 23 C -0.12 -2.18 5.44 -26.61 -0.14 -2.32 16 24 C -0.01 -0.19 5.60 -27.46 -0.15 -0.35 16 25 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 26 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.06 1.55 7.07 -51.93 -0.37 1.18 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.39 4.66 8.62 -40.82 -0.35 4.31 16 31 H 0.14 1.83 6.16 -52.48 -0.32 1.51 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 34 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.04 0.65 7.76 -51.93 -0.40 0.25 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.03 0.57 5.17 -51.93 -0.27 0.30 16 LS Contribution 299.81 15.07 4.52 4.52 Total: -1.00 -28.28 299.81 -8.35 -36.63 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -5.85 Total: 2.00 kcal Atomic # 6 Polarization: -12.64 SS G_CDS: -4.32 Total: -16.97 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 1.86 Total: -41.97 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.56 Total: 15.79 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.28 -8.35 -36.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.741 kcal (2) G-P(sol) polarization free energy of solvation -28.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds