Wall clock time and date at job start Mon Mar 30 2020 02:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00117 * 2 1 4 4 H 1.48506 * 109.47206 * 270.00178 * 3 2 1 5 5 H 1.48496 * 109.47089 * 30.00406 * 3 2 1 6 6 H 1.48501 * 109.47213 * 150.00291 * 3 2 1 7 7 C 1.37877 * 120.00019 * 180.02562 * 2 1 3 8 8 C 1.51275 * 120.85195 * 180.02562 * 7 2 1 9 9 C 1.53230 * 108.53711 * 231.32607 * 8 7 2 10 10 C 1.52958 * 109.40140 * 305.37328 * 9 8 7 11 11 H 1.09002 * 109.41261 * 303.48828 * 10 9 8 12 12 N 1.46499 * 109.41346 * 183.70620 * 10 9 8 13 13 C 1.39260 * 120.00145 * 84.64039 * 12 10 9 14 14 C 1.39366 * 120.60289 * 359.72849 * 13 12 10 15 15 N 1.31333 * 121.33783 * 179.70404 * 14 13 12 16 16 C 1.33216 * 121.83275 * 0.56827 * 15 14 13 17 17 C 1.40049 * 119.35198 * 359.72589 * 16 15 14 18 18 C 1.37031 * 120.63644 * 359.97438 * 17 16 15 19 19 C 1.50977 * 104.18600 * 179.97438 * 17 16 15 20 20 N 1.47298 * 103.14720 * 0.02562 * 19 17 16 21 21 N 1.23120 * 109.27074 * 359.97438 * 20 19 17 22 22 C 1.52955 * 109.82348 * 63.59950 * 10 9 8 23 23 C 1.51268 * 120.84902 * 359.97438 * 7 2 1 24 24 H 0.97003 * 119.99860 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.62312 * 351.03826 * 8 7 2 26 26 H 1.08996 * 109.62429 * 111.41707 * 8 7 2 27 27 H 1.09002 * 109.47900 * 65.34837 * 9 8 7 28 28 H 1.08993 * 109.48369 * 185.37981 * 9 8 7 29 29 H 0.97004 * 119.99853 * 264.65127 * 12 10 9 30 30 H 1.07995 * 119.33443 * 359.97438 * 14 13 12 31 31 H 1.08004 * 120.97934 * 179.97438 * 18 17 16 32 32 H 1.08999 * 110.68285 * 118.41673 * 19 17 16 33 33 H 1.09002 * 110.68795 * 241.58570 * 19 17 16 34 34 H 1.08988 * 109.48772 * 176.42282 * 22 10 9 35 35 H 1.09004 * 109.47866 * 56.37455 * 22 10 9 36 36 H 1.08999 * 109.62523 * 8.96369 * 23 7 2 37 37 H 1.08996 * 109.78786 * 248.48497 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9911 -2.1308 -1.1346 10 6 3.3402 -3.5067 -0.9841 11 1 3.5739 -3.9123 0.0003 12 7 3.8605 -4.4070 -2.0160 13 6 5.0565 -5.0891 -1.8065 14 6 5.7715 -4.9202 -0.6223 15 7 6.8978 -5.5604 -0.4072 16 6 7.4173 -6.3911 -1.3099 17 6 6.7453 -6.5956 -2.5215 18 6 5.5644 -5.9514 -2.7824 19 6 7.6180 -7.5760 -3.2676 20 7 8.7307 -7.8134 -2.3322 21 7 8.5532 -7.1473 -1.3121 22 6 1.8233 -3.3823 -1.1358 23 6 1.2677 -2.5151 -0.0005 24 1 -0.4850 0.8401 0.0004 25 1 3.8983 -0.2078 -0.1591 26 1 3.8772 -1.5975 0.9557 27 1 3.7071 -1.6972 -2.0935 28 1 5.0752 -2.2343 -1.0892 29 1 3.3720 -4.5280 -2.8453 30 1 5.3895 -4.2525 0.1358 31 1 5.0418 -6.1047 -3.7150 32 1 7.0765 -8.5014 -3.4640 33 1 7.9824 -7.1376 -4.1967 34 1 1.3710 -4.3729 -1.0910 35 1 1.5907 -2.9191 -2.0947 36 1 0.2036 -2.3408 -0.1601 37 1 1.4168 -3.0208 0.9534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167844865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:42 Heat of formation + Delta-G solvation = 89.636041 kcal Electronic energy + Delta-G solvation = -20215.624409 eV Core-core repulsion = 17186.527348 eV Total energy + Delta-G solvation = -3029.097061 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.00942 -39.38198 -37.45556 -34.78177 -32.93709 -31.88034 -30.07780 -29.30011 -29.16682 -26.91124 -24.62841 -22.90868 -21.72964 -21.43203 -21.15463 -19.70993 -17.97236 -17.05711 -16.77662 -16.19269 -15.98786 -15.14438 -14.57938 -14.21694 -13.96040 -13.83600 -13.40329 -13.12504 -12.89324 -12.65645 -12.30252 -12.23563 -12.13831 -11.77160 -11.32950 -11.08558 -10.87463 -10.65126 -10.51159 -10.30137 -10.15161 -9.82304 -9.58835 -9.36581 -9.16919 -8.85392 -8.61323 -7.54286 -6.24997 -4.17354 0.24999 1.04621 2.15569 3.07590 3.18081 3.27660 3.28472 3.63331 3.79631 3.94375 4.26105 4.29489 4.58807 4.62475 4.94713 4.99227 5.02921 5.13924 5.32523 5.40879 5.56277 5.73082 5.76979 5.84155 6.17336 6.25863 6.32938 6.46266 6.56345 6.62431 6.78829 6.91216 7.17096 7.21917 7.43080 7.49801 7.55394 7.64474 7.70361 8.20299 8.25782 8.80373 9.39495 10.84281 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.040024 B = 0.003906 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.418989 B = 7167.474134 C = 7490.374187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.078 3.922 3 Si 0.888 3.112 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.494 4.494 8 C -0.014 4.014 9 C -0.121 4.121 10 C 0.148 3.852 11 H 0.077 0.923 12 N -0.706 5.706 13 C 0.221 3.779 14 C 0.048 3.952 15 N -0.381 5.381 16 C 0.093 3.907 17 C -0.123 4.123 18 C -0.152 4.152 19 C -0.035 4.035 20 N -0.162 5.162 21 N -0.114 5.114 22 C -0.114 4.114 23 C 0.013 3.987 24 H 0.266 0.734 25 H 0.034 0.966 26 H 0.021 0.979 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.402 0.598 30 H 0.173 0.827 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.536 -10.221 -7.428 14.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.125 4.125 3 Si 0.716 3.284 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.513 4.513 8 C -0.052 4.052 9 C -0.160 4.160 10 C 0.046 3.954 11 H 0.095 0.905 12 N -0.328 5.328 13 C 0.104 3.896 14 C -0.125 4.125 15 N -0.091 5.091 16 C -0.141 4.141 17 C -0.133 4.133 18 C -0.183 4.183 19 C -0.164 4.164 20 N -0.060 5.060 21 N -0.008 5.008 22 C -0.152 4.152 23 C -0.024 4.024 24 H 0.076 0.924 25 H 0.052 0.948 26 H 0.039 0.961 27 H 0.075 0.925 28 H 0.056 0.944 29 H 0.237 0.763 30 H 0.190 0.810 31 H 0.157 0.843 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 8.799 -10.369 -6.123 14.914 hybrid contribution -1.489 1.308 -1.827 2.696 sum 7.310 -9.060 -7.950 14.097 Atomic orbital electron populations 1.69821 1.06207 1.27188 1.49199 1.24845 0.94717 0.98682 0.94266 0.86661 0.80040 0.83201 0.78497 1.20412 1.21513 1.19067 1.19991 0.89256 0.91439 1.50647 1.19730 0.96723 0.95250 0.93538 1.22057 0.97069 0.95158 1.01677 1.21341 0.95671 0.88934 0.89502 0.90459 1.45497 1.20451 1.45316 1.21506 1.19204 0.87177 0.89269 0.93923 1.22588 0.91347 1.01941 0.96589 1.66541 1.09687 1.02425 1.30411 1.21280 0.96199 1.03867 0.92799 1.21986 0.96097 0.97541 0.97648 1.19853 0.96754 1.01056 1.00642 1.23320 0.93192 0.99353 1.00563 1.78282 1.17628 1.12280 0.97781 1.72450 1.12362 0.98835 1.17118 1.21938 0.91573 0.98943 1.02758 1.19345 0.98911 0.92718 0.91476 0.92412 0.94792 0.96079 0.92477 0.94379 0.76309 0.80970 0.84281 0.84460 0.84454 0.94351 0.92491 0.91945 0.97417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.05 12.73 55.43 0.71 -23.35 16 2 C 0.08 2.00 5.46 -17.82 -0.10 1.90 16 3 Si 0.89 19.97 27.27 -169.99 -4.64 15.34 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -5.81 6.46 56.52 0.37 -5.45 16 7 C -0.49 -11.86 5.51 -98.92 -0.55 -12.40 16 8 C -0.01 -0.30 5.59 -27.48 -0.15 -0.45 16 9 C -0.12 -2.12 5.42 -26.63 -0.14 -2.26 16 10 C 0.15 2.33 2.05 -67.98 -0.14 2.19 16 11 H 0.08 1.23 6.52 -51.93 -0.34 0.89 16 12 N -0.71 -8.96 5.24 -51.97 -0.27 -9.23 16 13 C 0.22 2.87 6.68 -83.49 -0.56 2.31 16 14 C 0.05 0.70 9.97 -17.34 -0.17 0.53 16 15 N -0.38 -6.22 10.39 -12.45 -0.13 -6.35 16 16 C 0.09 1.44 8.36 -156.40 -1.31 0.14 16 17 C -0.12 -1.53 6.51 -104.25 -0.68 -2.21 16 18 C -0.15 -1.74 10.03 -39.44 -0.40 -2.13 16 19 C -0.03 -0.34 8.03 -4.62 -0.04 -0.37 16 20 N -0.16 -2.08 12.77 -11.04 -0.14 -2.22 16 21 N -0.11 -1.75 11.95 30.96 0.37 -1.38 16 22 C -0.11 -2.01 5.40 -26.61 -0.14 -2.15 16 23 C 0.01 0.30 5.97 -27.46 -0.16 0.13 16 24 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 25 H 0.03 0.72 4.78 -51.93 -0.25 0.47 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.04 0.62 7.71 -51.93 -0.40 0.22 16 29 H 0.40 4.32 8.63 -40.82 -0.35 3.97 16 30 H 0.17 2.44 6.14 -52.49 -0.32 2.12 16 31 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 32 H 0.14 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.14 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.04 0.61 8.14 -51.94 -0.42 0.19 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.55 7.07 -51.93 -0.37 1.18 16 37 H 0.01 0.17 8.14 -51.93 -0.42 -0.26 16 LS Contribution 300.22 15.07 4.52 4.52 Total: -1.00 -27.71 300.22 -8.70 -36.41 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -4.58 Total: 1.04 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -4.54 Total: -14.79 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.53 Total: -42.52 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.64 Total: 15.34 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -27.71 -8.70 -36.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.042 kcal (2) G-P(sol) polarization free energy of solvation -27.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds