Wall clock time and date at job start Mon Mar 30 2020 02:01:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 120.00117 * 2 1 4 4 H 1.48506 * 109.47206 * 270.00178 * 3 2 1 5 5 H 1.48496 * 109.47089 * 30.00406 * 3 2 1 6 6 H 1.48501 * 109.47213 * 150.00291 * 3 2 1 7 7 C 1.37877 * 120.00019 * 180.02562 * 2 1 3 8 8 C 1.51275 * 120.85195 * 180.02562 * 7 2 1 9 9 C 1.53230 * 108.53711 * 231.32607 * 8 7 2 10 10 C 1.52958 * 109.40140 * 305.37328 * 9 8 7 11 11 H 1.09002 * 109.41261 * 303.48828 * 10 9 8 12 12 N 1.46499 * 109.41346 * 183.70620 * 10 9 8 13 13 C 1.39260 * 120.00145 * 84.64039 * 12 10 9 14 14 C 1.39366 * 120.60289 * 359.72849 * 13 12 10 15 15 N 1.31333 * 121.33783 * 179.70404 * 14 13 12 16 16 C 1.33216 * 121.83275 * 0.56827 * 15 14 13 17 17 C 1.40049 * 119.35198 * 359.72589 * 16 15 14 18 18 C 1.37031 * 120.63644 * 359.97438 * 17 16 15 19 19 C 1.50977 * 104.18600 * 179.97438 * 17 16 15 20 20 N 1.47298 * 103.14720 * 0.02562 * 19 17 16 21 21 N 1.23120 * 109.27074 * 359.97438 * 20 19 17 22 22 C 1.52955 * 109.82348 * 63.59950 * 10 9 8 23 23 C 1.51268 * 120.84902 * 359.97438 * 7 2 1 24 24 H 0.97003 * 119.99860 * 359.97438 * 1 2 3 25 25 H 1.09003 * 109.62312 * 351.03826 * 8 7 2 26 26 H 1.08996 * 109.62429 * 111.41707 * 8 7 2 27 27 H 1.09002 * 109.47900 * 65.34837 * 9 8 7 28 28 H 1.08993 * 109.48369 * 185.37981 * 9 8 7 29 29 H 0.97004 * 119.99853 * 264.65127 * 12 10 9 30 30 H 1.07995 * 119.33443 * 359.97438 * 14 13 12 31 31 H 1.08004 * 120.97934 * 179.97438 * 18 17 16 32 32 H 1.08999 * 110.68285 * 118.41673 * 19 17 16 33 33 H 1.09002 * 110.68795 * 241.58570 * 19 17 16 34 34 H 1.08988 * 109.48772 * 176.42282 * 22 10 9 35 35 H 1.09004 * 109.47866 * 56.37455 * 22 10 9 36 36 H 1.08999 * 109.62523 * 8.96369 * 23 7 2 37 37 H 1.08996 * 109.78786 * 248.48497 * 23 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 6 3.5171 -1.2165 0.0000 9 6 3.9911 -2.1308 -1.1346 10 6 3.3402 -3.5067 -0.9841 11 1 3.5739 -3.9123 0.0003 12 7 3.8605 -4.4070 -2.0160 13 6 5.0565 -5.0891 -1.8065 14 6 5.7715 -4.9202 -0.6223 15 7 6.8978 -5.5604 -0.4072 16 6 7.4173 -6.3911 -1.3099 17 6 6.7453 -6.5956 -2.5215 18 6 5.5644 -5.9514 -2.7824 19 6 7.6180 -7.5760 -3.2676 20 7 8.7307 -7.8134 -2.3322 21 7 8.5532 -7.1473 -1.3121 22 6 1.8233 -3.3823 -1.1358 23 6 1.2677 -2.5151 -0.0005 24 1 -0.4850 0.8401 0.0004 25 1 3.8983 -0.2078 -0.1591 26 1 3.8772 -1.5975 0.9557 27 1 3.7071 -1.6972 -2.0935 28 1 5.0752 -2.2343 -1.0892 29 1 3.3720 -4.5280 -2.8453 30 1 5.3895 -4.2525 0.1358 31 1 5.0418 -6.1047 -3.7150 32 1 7.0765 -8.5014 -3.4640 33 1 7.9824 -7.1376 -4.1967 34 1 1.3710 -4.3729 -1.0910 35 1 1.5907 -2.9191 -2.0947 36 1 0.2036 -2.3408 -0.1601 37 1 1.4168 -3.0208 0.9534 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167844865.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:42 Heat of formation + Delta-G solvation = 70.715208 kcal Electronic energy + Delta-G solvation = -20216.444878 eV Core-core repulsion = 17186.527348 eV Total energy + Delta-G solvation = -3029.917530 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.98109 -40.46995 -38.78080 -36.13967 -34.18711 -33.30863 -31.60645 -30.54627 -30.15256 -28.32378 -25.64985 -24.32406 -23.28937 -22.66230 -22.16556 -21.15672 -19.01463 -18.31861 -17.89237 -17.42987 -17.09226 -16.42791 -16.28545 -15.26009 -15.14921 -14.97610 -14.68869 -14.41013 -14.22572 -14.06029 -13.83432 -13.54668 -13.26358 -12.99418 -12.80142 -12.72841 -12.51458 -11.95566 -11.87882 -11.68772 -11.53792 -11.30514 -10.89382 -10.67723 -10.54863 -10.48844 -10.36467 -8.58876 -8.17699 -6.11233 -0.72196 0.08375 1.16026 1.37347 1.43181 1.49731 2.04438 2.40432 2.62842 2.76087 3.08198 3.12572 3.42699 3.62019 3.72329 3.94099 4.11025 4.15283 4.32314 4.35077 4.45499 4.51855 4.71169 4.76450 4.88484 4.91886 4.95918 5.05710 5.06357 5.23584 5.26297 5.32303 5.59209 5.64377 5.76057 5.83919 6.02503 6.33370 6.52500 6.69977 6.96409 7.27458 7.47450 8.92859 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.040024 B = 0.003906 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 699.418989 B = 7167.474134 C = 7490.374187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.024 3.976 3 Si 0.935 3.065 4 H -0.274 1.274 5 H -0.296 1.296 6 H -0.255 1.255 7 C -0.497 4.497 8 C -0.019 4.019 9 C -0.113 4.113 10 C 0.163 3.837 11 H 0.077 0.923 12 N -0.697 5.697 13 C 0.217 3.783 14 C 0.035 3.965 15 N -0.416 5.416 16 C 0.066 3.934 17 C -0.122 4.122 18 C -0.135 4.135 19 C -0.030 4.030 20 N -0.160 5.160 21 N -0.152 5.152 22 C -0.101 4.101 23 C 0.007 3.993 24 H 0.262 0.738 25 H 0.029 0.971 26 H 0.024 0.976 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.415 0.585 30 H 0.169 0.831 31 H 0.179 0.821 32 H 0.172 0.828 33 H 0.171 0.829 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.029 0.971 37 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.870 -11.804 -9.725 17.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.200 1.200 5 H -0.223 1.223 6 H -0.180 1.180 7 C -0.516 4.516 8 C -0.057 4.057 9 C -0.152 4.152 10 C 0.059 3.941 11 H 0.095 0.905 12 N -0.320 5.320 13 C 0.102 3.898 14 C -0.137 4.137 15 N -0.127 5.127 16 C -0.168 4.168 17 C -0.132 4.132 18 C -0.165 4.165 19 C -0.159 4.159 20 N -0.057 5.057 21 N -0.045 5.045 22 C -0.140 4.140 23 C -0.031 4.031 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.043 0.957 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.253 0.747 30 H 0.186 0.814 31 H 0.196 0.804 32 H 0.189 0.811 33 H 0.188 0.812 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.047 0.953 37 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 10.165 -11.969 -8.429 17.822 hybrid contribution -1.835 1.662 -1.125 2.720 sum 8.329 -10.307 -9.554 16.337 Atomic orbital electron populations 1.69954 1.07583 1.27391 1.52072 1.25542 0.95239 1.01576 0.95044 0.85896 0.79266 0.80119 0.78532 1.20016 1.22294 1.17979 1.20634 0.91118 0.91842 1.48051 1.19763 0.94674 0.96088 0.95212 1.21910 0.98104 0.95404 0.99761 1.20906 0.93998 0.88677 0.90540 0.90522 1.45030 1.20645 1.44987 1.21336 1.19152 0.86968 0.89764 0.93891 1.22599 0.91460 1.02180 0.97482 1.66443 1.10739 1.03700 1.31811 1.21596 0.96944 1.04220 0.94040 1.22290 0.96301 0.97793 0.96800 1.20187 0.96010 0.99077 1.01260 1.23599 0.91794 1.00182 1.00324 1.78143 1.18738 1.11036 0.97822 1.72491 1.13280 1.00274 1.18475 1.21681 0.93041 0.98937 1.00299 1.19311 0.97191 0.93322 0.93234 0.92884 0.95247 0.95720 0.92883 0.92776 0.74710 0.81389 0.80411 0.81124 0.81191 0.92176 0.92867 0.95261 0.97772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.10 12.73 21.45 0.27 -51.83 16 2 C 0.02 1.27 5.46 84.65 0.46 1.73 16 3 Si 0.93 41.34 27.27 68.60 1.87 43.21 16 4 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 5 H -0.30 -13.32 7.11 99.48 0.71 -12.61 16 6 H -0.26 -10.72 6.46 99.48 0.64 -10.08 16 7 C -0.50 -23.92 5.51 -16.17 -0.09 -24.01 16 8 C -0.02 -0.79 5.59 30.11 0.17 -0.62 16 9 C -0.11 -3.74 5.42 30.66 0.17 -3.57 16 10 C 0.16 4.76 2.05 44.96 0.09 4.85 16 11 H 0.08 2.30 6.52 -2.39 -0.02 2.29 16 12 N -0.70 -15.32 5.24 -318.32 -1.67 -16.99 16 13 C 0.22 4.98 6.68 38.61 0.26 5.24 16 14 C 0.03 0.97 9.97 85.04 0.85 1.82 16 15 N -0.42 -13.36 10.39 -193.30 -2.01 -15.37 16 16 C 0.07 1.97 8.36 133.89 1.12 3.09 16 17 C -0.12 -2.61 6.51 -19.62 -0.13 -2.74 16 18 C -0.13 -2.49 10.03 22.36 0.22 -2.26 16 19 C -0.03 -0.44 8.03 85.57 0.69 0.24 16 20 N -0.16 -3.73 12.77 -188.83 -2.41 -6.14 16 21 N -0.15 -4.48 11.95 -55.97 -0.67 -5.15 16 22 C -0.10 -3.42 5.40 30.67 0.17 -3.26 16 23 C 0.01 0.33 5.97 30.12 0.18 0.51 16 24 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 25 H 0.03 1.21 4.78 -2.39 -0.01 1.20 16 26 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.05 1.64 7.71 -2.39 -0.02 1.62 16 29 H 0.42 7.19 8.63 -92.71 -0.80 6.39 16 30 H 0.17 4.63 6.14 -2.91 -0.02 4.61 16 31 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 32 H 0.17 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.17 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 36 H 0.03 1.48 7.07 -2.39 -0.02 1.47 16 37 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -62.55 300.22 -0.21 -62.76 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: 0.25 Total: 8.48 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 4.15 Total: -18.97 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -6.48 Total: -95.48 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 1.87 Total: 43.21 kcal Total: -62.55 -0.21 -62.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167844865.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.480 kcal (2) G-P(sol) polarization free energy of solvation -62.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds