Wall clock time and date at job start Mon Mar 30 2020 02:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99725 * 2 1 4 4 H 1.48502 * 109.46693 * 269.99935 * 3 2 1 5 5 H 1.48495 * 109.47317 * 29.99859 * 3 2 1 6 6 H 1.48497 * 109.47236 * 150.00338 * 3 2 1 7 7 C 1.37867 * 120.00018 * 179.97438 * 2 1 3 8 8 C 1.51270 * 120.85172 * 359.97438 * 7 2 1 9 9 C 1.53232 * 108.69741 * 231.22989 * 8 7 2 10 10 C 1.53005 * 109.37855 * 305.66359 * 9 8 7 11 11 H 1.09005 * 109.26030 * 303.19288 * 10 9 8 12 12 N 1.46503 * 109.39625 * 183.51420 * 10 9 8 13 13 C 1.39331 * 120.00452 * 84.44792 * 12 10 9 14 14 C 1.39057 * 119.87073 * 0.02562 * 13 12 10 15 15 C 1.39070 * 117.63214 * 179.97438 * 14 13 12 16 16 N 1.37144 * 134.63525 * 180.02562 * 15 14 13 17 17 H 0.97001 * 125.07644 * 359.96067 * 16 15 14 18 18 C 1.36934 * 109.83753 * 179.97438 * 16 15 14 19 19 C 1.34281 * 109.99347 * 359.97438 * 18 16 15 20 20 C 1.41266 * 117.99952 * 0.02562 * 15 14 13 21 21 N 1.32624 * 119.73534 * 359.97438 * 20 15 14 22 22 N 1.28531 * 121.70866 * 359.73282 * 21 20 15 23 23 C 1.52953 * 109.98742 * 63.31008 * 10 9 8 24 24 C 1.51271 * 120.84882 * 179.97438 * 7 2 1 25 25 H 0.97001 * 120.00180 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.62532 * 351.04191 * 8 7 2 27 27 H 1.09001 * 109.62715 * 111.41878 * 8 7 2 28 28 H 1.09003 * 109.48094 * 65.44635 * 9 8 7 29 29 H 1.08998 * 109.48540 * 185.48862 * 9 8 7 30 30 H 0.97000 * 119.99732 * 264.45271 * 12 10 9 31 31 H 1.07994 * 121.18732 * 359.95456 * 14 13 12 32 32 H 1.08001 * 125.00082 * 179.97438 * 18 16 15 33 33 H 1.07992 * 126.46983 * 179.97438 * 19 18 16 34 34 H 1.08997 * 109.48509 * 176.50033 * 23 10 9 35 35 H 1.09004 * 109.49182 * 56.46944 * 23 10 9 36 36 H 1.08996 * 109.62720 * 248.38384 * 24 7 2 37 37 H 1.08998 * 109.62860 * 8.76774 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0045 -1.1940 0.0005 8 6 1.2677 -2.5151 0.0017 9 6 1.8227 -3.3861 1.1337 10 6 3.3406 -3.5064 0.9842 11 1 3.5739 -3.9122 -0.0003 12 7 3.8614 -4.4065 2.0161 13 6 3.8538 -5.7841 1.8074 14 6 3.3519 -6.3017 0.6184 15 6 3.3673 -7.6832 0.4590 16 7 2.9751 -8.5429 -0.5350 17 1 2.5787 -8.2755 -1.3790 18 6 3.2265 -9.8350 -0.1578 19 6 3.7786 -9.8569 1.0661 20 6 3.8896 -8.4666 1.5121 21 7 4.3452 -7.8752 2.6084 22 7 4.3309 -6.5970 2.7421 23 6 3.9915 -2.1304 1.1341 24 6 3.5170 -1.2164 0.0000 25 1 -0.4850 0.8400 0.0004 26 1 0.2037 -2.3408 0.1619 27 1 1.4164 -3.0181 -0.9538 28 1 1.5900 -2.9257 2.0940 29 1 1.3699 -4.3764 1.0859 30 1 4.2113 -4.0434 2.8447 31 1 2.9636 -5.6541 -0.1536 32 1 3.0124 -10.7080 -0.7566 33 1 4.0819 -10.7342 1.6178 34 1 5.0755 -2.2340 1.0883 35 1 3.7080 -1.6965 2.0931 36 1 3.8771 -1.6006 -0.9543 37 1 3.8982 -0.2072 0.1556 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167845215.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:02:23 Heat of formation + Delta-G solvation = 83.427403 kcal Electronic energy + Delta-G solvation = -20355.291900 eV Core-core repulsion = 17325.925612 eV Total energy + Delta-G solvation = -3029.366288 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.67300 -38.97714 -37.53413 -34.64929 -32.32800 -31.38771 -30.77717 -29.76328 -29.02888 -26.76196 -24.56732 -22.85757 -21.84140 -21.29536 -20.85278 -19.74169 -18.65181 -17.12985 -16.34107 -16.22372 -15.51922 -15.29298 -14.66038 -14.49073 -13.85005 -13.59387 -13.29752 -13.28658 -13.00721 -12.74491 -12.43218 -12.20599 -11.70659 -11.37548 -11.09432 -10.92624 -10.76410 -10.59163 -10.30524 -10.04138 -9.57655 -9.43529 -9.36148 -9.05194 -8.78898 -8.56251 -8.50673 -7.30586 -6.18588 -4.11051 0.86898 1.53190 2.56184 2.84492 3.21027 3.29347 3.30396 3.39538 4.01088 4.30177 4.32228 4.62149 4.93908 5.03905 5.08400 5.12764 5.36660 5.48551 5.73779 5.78576 5.86197 5.99277 6.08648 6.36481 6.42875 6.48480 6.61182 6.65517 6.68418 6.84545 6.92323 6.98000 7.25937 7.27034 7.46234 7.56112 7.61202 7.73873 7.95133 8.28219 8.87219 9.14800 9.45069 10.90694 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.036458 B = 0.004159 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.816367 B = 6730.738244 C = 7133.196197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.077 3.923 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.264 1.264 7 C -0.491 4.491 8 C 0.012 3.988 9 C -0.121 4.121 10 C 0.161 3.839 11 H 0.069 0.931 12 N -0.707 5.707 13 C 0.361 3.639 14 C -0.214 4.214 15 C 0.141 3.859 16 N -0.598 5.598 17 H 0.420 0.580 18 C 0.058 3.942 19 C -0.169 4.169 20 C -0.022 4.022 21 N -0.160 5.160 22 N -0.312 5.312 23 C -0.112 4.112 24 C -0.017 4.017 25 H 0.265 0.735 26 H 0.059 0.941 27 H 0.002 0.998 28 H 0.055 0.945 29 H 0.032 0.968 30 H 0.404 0.596 31 H 0.146 0.854 32 H 0.179 0.821 33 H 0.156 0.844 34 H 0.040 0.960 35 H 0.059 0.941 36 H 0.018 0.982 37 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.615 -14.638 -1.875 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.126 4.126 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.216 1.216 6 H -0.189 1.189 7 C -0.510 4.510 8 C -0.025 4.025 9 C -0.160 4.160 10 C 0.058 3.942 11 H 0.087 0.913 12 N -0.337 5.337 13 C 0.123 3.877 14 C -0.254 4.254 15 C 0.023 3.977 16 N -0.204 5.204 17 H 0.258 0.742 18 C -0.068 4.068 19 C -0.196 4.196 20 C -0.167 4.167 21 N -0.007 5.007 22 N -0.170 5.170 23 C -0.151 4.151 24 C -0.055 4.055 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.021 0.979 28 H 0.073 0.927 29 H 0.051 0.949 30 H 0.239 0.761 31 H 0.164 0.836 32 H 0.196 0.804 33 H 0.173 0.827 34 H 0.059 0.941 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 6.000 -14.492 -0.647 15.699 hybrid contribution -0.417 1.350 -1.520 2.075 sum 5.583 -13.142 -2.167 14.442 Atomic orbital electron populations 1.69831 1.06197 1.27067 1.49436 1.24854 0.94722 0.98636 0.94378 0.86677 0.79995 0.83252 0.78537 1.20377 1.21576 1.18893 1.20008 0.89246 0.91501 1.50275 1.19349 0.98850 0.92788 0.91553 1.22112 0.93251 0.98424 1.02196 1.21145 0.94803 0.88994 0.89295 0.91265 1.45029 1.66476 1.00388 1.21845 1.19632 0.90633 0.87477 0.89912 1.20537 1.12366 0.91719 1.00737 1.18751 0.96887 0.91923 0.90153 1.41591 1.56398 1.04979 1.17470 0.74206 1.21944 1.01444 0.86508 0.96923 1.21415 1.08368 0.93874 0.95968 1.21519 1.06402 0.95519 0.93304 1.72634 1.08404 1.02022 1.17689 1.73039 1.21028 0.97156 1.25733 1.21821 0.97031 0.94289 1.01915 1.19771 0.96820 0.95561 0.93357 0.92485 0.92259 0.97927 0.92661 0.94914 0.76058 0.83624 0.80408 0.82683 0.94115 0.92240 0.96343 0.94232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.79 12.73 55.43 0.71 -24.09 16 2 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 3 Si 0.89 20.24 27.53 -169.99 -4.68 15.56 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.26 -5.77 6.11 56.52 0.35 -5.43 16 7 C -0.49 -12.25 5.52 -98.92 -0.55 -12.79 16 8 C 0.01 0.30 5.96 -27.48 -0.16 0.13 16 9 C -0.12 -2.45 5.44 -26.61 -0.14 -2.59 16 10 C 0.16 2.90 2.05 -67.95 -0.14 2.77 16 11 H 0.07 1.24 6.49 -51.93 -0.34 0.90 16 12 N -0.71 -11.78 5.26 -53.80 -0.28 -12.06 16 13 C 0.36 6.22 7.71 -154.44 -1.19 5.03 16 14 C -0.21 -3.38 8.88 -38.97 -0.35 -3.73 16 15 C 0.14 2.02 7.34 -84.03 -0.62 1.40 16 16 N -0.60 -5.98 6.05 -10.60 -0.06 -6.04 16 17 H 0.42 2.97 8.96 -40.82 -0.37 2.61 16 18 C 0.06 0.49 11.81 -16.67 -0.20 0.29 16 19 C -0.17 -1.86 11.08 -37.68 -0.42 -2.28 16 20 C -0.02 -0.34 7.63 -83.08 -0.63 -0.97 16 21 N -0.16 -2.83 11.57 33.21 0.38 -2.45 16 22 N -0.31 -5.70 11.52 31.25 0.36 -5.34 16 23 C -0.11 -2.10 5.41 -26.65 -0.14 -2.24 16 24 C -0.02 -0.37 5.59 -27.50 -0.15 -0.52 16 25 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.06 1.56 7.07 -51.93 -0.37 1.19 16 27 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 28 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.03 0.63 7.70 -51.93 -0.40 0.23 16 30 H 0.40 6.31 8.73 -40.82 -0.36 5.95 16 31 H 0.15 2.20 6.24 -52.49 -0.33 1.88 16 32 H 0.18 0.68 8.06 -52.49 -0.42 0.25 16 33 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.04 0.86 4.59 -51.93 -0.24 0.62 16 LS Contribution 299.76 15.07 4.52 4.52 Total: -1.00 -30.10 299.76 -8.39 -38.49 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.54 Total: 4.99 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -4.79 Total: -13.58 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: 1.10 Total: -49.98 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.68 Total: 15.56 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -30.10 -8.39 -38.49 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167845215.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.915 kcal (2) G-P(sol) polarization free energy of solvation -30.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds